Rh1AG380200

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003014
Physical Location & Seq
Reverse (-)
61160566 .. 61163784
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG380200.1

Sequence Viewer

Length: 1542 bp
ATGCTAGTGTACTTAAACACCGTGGTGGATGCTTCGATCCATGAATACCAAGATGACACCTTTATACGTCGTTCCAATTCATTCTTCTTCCATGGCGGAAGTGAGGGTCTCTATGCTTCCAAAATTCACTCTGGTAATGACAAACTCGCTTCTGAAGACAAGACCATTGATGGCAAGTCCTTTATCAGGTTTGAATCTATCACCTTTCGAAGGACCAAGGAGTCTGCTGAAAAGAAGAATGAGATGCAGCAGAGAACTGGCTTGGTTGAGGCTATAGTACTTGAGGTTAGAGACAGGGAGAAGATTGGGGGTTCTTATTTGAACTCTGAGGCAATATGCTGTACCCCGGAGCTTTCCAAGGATGGTTCGTGCAAGGTGGGAGAGGTTATCATCCAGCAAAAACCCGACAACCCTGATGGGCCAAAAAGGATGCAGACCTTCTTTGAGGGGAAAAATGAAGAGAGCAACATGGAACTTCAGACTATTCAGATAAACAGAACTGGAATGTACTATCTTTATTTCATGTTTTGTGATCCAGAACTTGTTGGCACATCAATTAGTGGAAGAACTGTTTGGAGGAACCCGGATGGTTATTTACCTGGAAAGATGTCGCCGCTGATGACATTTTTCGGCCTCATGTCTTTAGCTTACCTTGTCCTTGGTCTTTTCTGGTTTCTCCGCTTTGTGCAGTATTGGAAAGATATAATACAGTTGCACTACCACATCAGTGCTGTTATTGGTCTTGGAATGTGTGAGATGGCTCTATGGTATTTTGAATATGCAAATTTCAATTCAACCGGAACCAGACCAATGGGAATTACCATGTGGGCAGTAACCTTCGGTGCAGTCAAAAAAACTGTTTCCCGGCTTCTTCTTCTGGTGGTTTCAATGGGGTATGGTGTTGTGCGGCCAACCCTTGGTGGCATTACCACGAAAGTAGTACTCCTTGGTGTGATATACTTTGTAGCATCAGAAGCACTTGAGCTTGTTGAACATTTGGGAAATATCAATGACTTTTCTGGAAAAACAAGGCTCTTTCTGGTGCTACCGGTTGCTCTATTGGATGCCTGTTTTATTCTTTGGATCTTTTCATCACTATCTAAAACTTTGGAGAAGCTTCAGATTCGAAGAAGCATGGCCAAACTTGAGCTCTACCGGAAGTTTACCAATTCCCTTGCAGTATCAGTATTGCTGTCTGTCGCTTGGATTGGTTATGAGTTGTATTTTAATGCGAGTGACCCTTTGAGTGAATTGTGGCGAAGAGCCTGGATCATCCCAGCTTTCTGGGTTTTGCTTGCATACTCTCTGTTGGTAGTTATATGTGTTCTTTGGGCTCCATCTCACAACCCAACCGGATATGCATACTCCGAGGAGACTGTGGATGACTTTGATGAGGAGGGTATCTCGCTCACTAGTGGAAGCGGAGTTAAGGTGGCCGGCATTGACTTGGCCAGCAAGCTAGAAAGAAAGGAAAGGAAGCTATCAAGTTCAGCAGATCACCATGTGTTTCTTGGGGAAGGTGAGGAGGACAAGAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

513

Amino Acids

58.02

Weight (kDa)

5.95

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 205 - 450 1.2e-93 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 917
AciI CCGC 5 cut(s) 96, 614, 679, 907, 1422
AclWI GGATC 4 cut(s) 31, 527, 1091, 1277
AcoI YGGCCR 4 cut(s) 908, 1137, 1434, 1449
AcsI RAATTY 2 cut(s) 123, 784
AcuI CTGAAG 3 cut(s) 174, 461, 1103
AdeI CACNNNGTG 1 cut(s) 1504
AfaI GTAC 5 cut(s) 11, 279, 343, 509, 942
AfiI CCNNNNNNNGG 3 cut(s) 186, 210, 917
AgeI ACCGGT 1 cut(s) 1048
AgsI TTSAA 7 cut(s) 194, 322, 776, 790, 795, 888, 992
AhlI ACTAGT 1 cut(s) 1412
AjnI CCWGG 2 cut(s) 598, 1265
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 556, 588
AleI CACNNNNGTG 2 cut(s) 23, 726
AluBI AGCT 8 cut(s) 352, 647, 985, 1117, 1150, 1280, 1459, 1480
AluI AGCT 8 cut(s) 352, 647, 985, 1117, 1150, 1280, 1459, 1480
Alw21I GWGCWC 1 cut(s) 1152
Alw26I GTCTC 3 cut(s) 113, 285, 1367
AlwI GGATC 4 cut(s) 31, 527, 1091, 1277
AoxI GGCC 6 cut(s) 419, 631, 908, 1137, 1434, 1449
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 2 cut(s) 123, 784
AsiGI ACCGGT 1 cut(s) 1048
AspS9I GGNCC 2 cut(s) 213, 419
AsuC2I CCSGG 3 cut(s) 347, 584, 865
AsuHPI GGTGA 3 cut(s) 193, 1490, 1532
AsuII TTCGAA 2 cut(s) 208, 1126
AvaII GGWCC 1 cut(s) 213
BalI TGGCCA 2 cut(s) 1139, 1451
BanII GRGCYC 2 cut(s) 1152, 1336
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 1152
BbvI GCAGC 1 cut(s) 259
BccI CCATC 6 cut(s) 164, 356, 410, 581, 751, 1345
BciT130I CCWGG 2 cut(s) 600, 1267
BcnI CCSGG 3 cut(s) 347, 584, 865
BcoDI GTCTC 3 cut(s) 113, 285, 1367
BcuI ACTAGT 1 cut(s) 1412
BfaI CTAG 3 cut(s) 5, 1413, 1460
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 3 cut(s) 248, 614, 908
BlsI GCNGC 3 cut(s) 249, 615, 909
BmcAI AGTACT 2 cut(s) 279, 942
Bme1390I CCNGG 5 cut(s) 347, 584, 600, 865, 1267
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 213, 419
BmiI GGNNCC 3 cut(s) 581, 802, 1335
BmrFI CCNGG 5 cut(s) 347, 584, 600, 865, 1267
BmsI GCATC 5 cut(s) 19, 234, 420, 977, 1054
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 1388, 1420
Bpu14I TTCGAA 2 cut(s) 208, 1126
BpuEI CTTGAG 3 cut(s) 302, 1001, 1166
BpuMI CCSGG 3 cut(s) 347, 584, 865
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 9 cut(s) 21, 91, 216, 345, 357, 658, 916, 946, 1368
BsaWI WCCGGW 4 cut(s) 797, 1048, 1155, 1352
BsaXI ACNNNNNCTCC 2 cut(s) 1416, 1446
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 210, 917
Bse118I RCCGGY 2 cut(s) 1048, 1436
Bse1I ACTGG 2 cut(s) 262, 505
BseBI CCWGG 2 cut(s) 600, 1267
BseDI CCNNGG 9 cut(s) 21, 91, 216, 345, 357, 658, 916, 946, 1368
BseGI GGATG 8 cut(s) 34, 367, 390, 435, 592, 1069, 1272, 1387
BseLI CCNNNNNNNGG 3 cut(s) 186, 210, 917
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 262, 505
BseRI GAGGAG 3 cut(s) 1385, 1409, 1538
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 1276
BsgI GTGCAG 2 cut(s) 707, 864
BshFI GGCC 6 cut(s) 421, 633, 910, 1139, 1436, 1451
BshTI ACCGGT 1 cut(s) 1048
BsiHKAI GWGCWC 1 cut(s) 1152
BsiSI CCGG 8 cut(s) 347, 584, 798, 865, 1049, 1156, 1353, 1437
BslI CCNNNNNNNGG 3 cut(s) 186, 210, 917
BsmAI GTCTC 3 cut(s) 113, 285, 1367
BsnI GGCC 6 cut(s) 421, 633, 910, 1139, 1436, 1451
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 2 cut(s) 208, 1126
Bsp1286I GDGCHC 2 cut(s) 1152, 1336
Bsp143I GATC 5 cut(s) 36, 532, 1083, 1269, 1495
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 5 cut(s) 96, 614, 679, 907, 1422
BspANI GGCC 6 cut(s) 421, 633, 910, 1139, 1436, 1451
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 581, 802, 1335
BspPI GGATC 4 cut(s) 31, 527, 1091, 1277
BspQI GCTCTTC 1 cut(s) 1255
BspT104I TTCGAA 2 cut(s) 208, 1126
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 1048, 1436
BsrI ACTGG 2 cut(s) 262, 505
BssAI RCCGGY 2 cut(s) 1048, 1436
BssECI CCNNGG 9 cut(s) 21, 91, 216, 345, 357, 658, 916, 946, 1368
BssMI GATC 5 cut(s) 36, 532, 1083, 1269, 1495
BssT1I CCWWGG 6 cut(s) 91, 216, 357, 658, 916, 946
Bst2UI CCWGG 2 cut(s) 600, 1267
Bst4CI ACNGT 5 cut(s) 22, 571, 711, 859, 1378
Bst6I CTCTTC 2 cut(s) 453, 1255
BstBI TTCGAA 2 cut(s) 208, 1126
BstC8I GCNNGC 4 cut(s) 1296, 1438, 1453, 1457
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 2 cut(s) 21, 91
BstENI CCTNNNNNAGG 2 cut(s) 184, 208
BstF5I GGATG 8 cut(s) 34, 367, 390, 435, 592, 1069, 1272, 1387
BstKTI GATC 5 cut(s) 39, 535, 1086, 1272, 1498
BstMAI GTCTC 3 cut(s) 113, 285, 1367
BstMBI GATC 5 cut(s) 36, 532, 1083, 1269, 1495
BstMWI GCNNNNNNNGC 1 cut(s) 974
BstNI CCWGG 2 cut(s) 600, 1267
BstSCI CCNGG 5 cut(s) 345, 582, 598, 863, 1265
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 1083
BstXI CCANNNNNNTGG 2 cut(s) 811, 1284
BstYI RGATCY 1 cut(s) 1083
BsuRI GGCC 6 cut(s) 421, 633, 910, 1139, 1436, 1451
BtgI CCRYGG 2 cut(s) 21, 91
BtsCI GGATG 8 cut(s) 34, 367, 390, 435, 592, 1069, 1272, 1387
BtsIMutI CAGTG 1 cut(s) 733
Cac8I GCNNGC 4 cut(s) 1296, 1438, 1453, 1457
Cfr10I RCCGGY 2 cut(s) 1048, 1436
Cfr13I GGNCC 2 cut(s) 213, 419
Csp6I GTAC 5 cut(s) 10, 278, 342, 508, 941
CspAI ACCGGT 1 cut(s) 1048
CviAII CATG 8 cut(s) 41, 92, 469, 523, 637, 823, 1135, 1502
CviQI GTAC 5 cut(s) 10, 278, 342, 508, 941
DdeI CTNAG 1 cut(s) 327
DpnI GATC 5 cut(s) 38, 534, 1085, 1271, 1497
DpnII GATC 5 cut(s) 36, 532, 1083, 1269, 1495
DraIII CACNNNGTG 1 cut(s) 1504
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 4 cut(s) 908, 1137, 1434, 1449
Eam1104I CTCTTC 2 cut(s) 453, 1255
EarI CTCTTC 2 cut(s) 453, 1255
EciI GGCGGA 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 1150
Eco130I CCWWGG 6 cut(s) 91, 216, 357, 658, 916, 946
Eco24I GRGCYC 2 cut(s) 1152, 1336
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 1150
Eco57I CTGAAG 3 cut(s) 174, 461, 1103
EcoICRI GAGCTC 1 cut(s) 1150
EcoNI CCTNNNNNAGG 2 cut(s) 184, 208
EcoRII CCWGG 2 cut(s) 598, 1265
EcoT14I CCWWGG 6 cut(s) 91, 216, 357, 658, 916, 946
EcoT22I ATGCAT 1 cut(s) 1363
EcoT38I GRGCYC 2 cut(s) 1152, 1336
ErhI CCWWGG 6 cut(s) 91, 216, 357, 658, 916, 946
FaeI CATG 8 cut(s) 44, 95, 472, 526, 640, 826, 1138, 1505
FatI CATG 8 cut(s) 40, 91, 468, 522, 636, 822, 1134, 1501
Fnu4HI GCNGC 3 cut(s) 248, 614, 908
FokI GGATG 8 cut(s) 41, 374, 377, 442, 599, 1076, 1259, 1394
FriOI GRGCYC 2 cut(s) 1152, 1336
Fsp4HI GCNGC 3 cut(s) 248, 614, 908
FspBI CTAG 3 cut(s) 5, 1413, 1460
GluI GCNGC 3 cut(s) 248, 614, 908
GsaI CCCAGC 1 cut(s) 1280
HaeIII GGCC 6 cut(s) 421, 633, 910, 1139, 1436, 1451
HapII CCGG 8 cut(s) 347, 584, 798, 865, 1049, 1156, 1353, 1437
Hin1II CATG 8 cut(s) 44, 95, 472, 526, 640, 826, 1138, 1505
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 3 cut(s) 194, 221, 1123
HpaII CCGG 8 cut(s) 347, 584, 798, 865, 1049, 1156, 1353, 1437
HphI GGTGA 3 cut(s) 193, 1490, 1532
Hpy166II GTNNAC 2 cut(s) 10, 1164
Hpy188I TCNGA 7 cut(s) 154, 328, 480, 489, 973, 1122, 1369
Hpy188III TCNNGA 2 cut(s) 536, 1020
Hpy8I GTNNAC 2 cut(s) 10, 1164
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 4 cut(s) 204, 448, 847, 1511
HpyCH4III ACNGT 5 cut(s) 22, 571, 711, 859, 1378
HpyCH4IV ACGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 974
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 8 cut(s) 44, 95, 472, 526, 640, 826, 1138, 1505
KroI GCCGGC 1 cut(s) 1436
KroNI GCCGGC 1 cut(s) 1438
Kzo9I GATC 5 cut(s) 36, 532, 1083, 1269, 1495
LguI GCTCTTC 1 cut(s) 1255
LmnI GCTCC 2 cut(s) 349, 1339
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 5 cut(s) 19, 234, 420, 977, 1054
MaeI CTAG 3 cut(s) 5, 1413, 1460
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 832, 1235
MalI GATC 5 cut(s) 38, 534, 1085, 1271, 1497
MboI GATC 5 cut(s) 36, 532, 1083, 1269, 1495
MflI RGATCY 1 cut(s) 1083
MhlI GDGCHC 2 cut(s) 1152, 1336
MlsI TGGCCA 2 cut(s) 1139, 1451
MluCI AATT 8 cut(s) 76, 123, 555, 784, 790, 816, 1168, 1250
MluNI TGGCCA 2 cut(s) 1139, 1451
MlyI GAGTC 1 cut(s) 230
Mox20I TGGCCA 2 cut(s) 1139, 1451
Mph1103I ATGCAT 1 cut(s) 1363
MroNI GCCGGC 1 cut(s) 1436
MscI TGGCCA 2 cut(s) 1139, 1451
MseI TTAA 3 cut(s) 14, 1227, 1428
MslI CAYNNNNRTG 2 cut(s) 23, 726
Msp20I TGGCCA 2 cut(s) 1139, 1451
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 8 cut(s) 347, 584, 798, 865, 1049, 1156, 1353, 1437
MspR9I CCNGG 5 cut(s) 347, 584, 600, 865, 1267
MvaI CCWGG 2 cut(s) 600, 1267
MwoI GCNNNNNNNGC 1 cut(s) 974
NaeI GCCGGC 1 cut(s) 1438
NciI CCSGG 3 cut(s) 347, 584, 865
NcoI CCATGG 1 cut(s) 91
NdeII GATC 5 cut(s) 36, 532, 1083, 1269, 1495
NgoMIV GCCGGC 1 cut(s) 1436
NlaIII CATG 8 cut(s) 44, 95, 472, 526, 640, 826, 1138, 1505
NlaIV GGNNCC 3 cut(s) 581, 802, 1335
NmuCI GTSAC 1 cut(s) 1235
NsiI ATGCAT 1 cut(s) 1363
NspV TTCGAA 2 cut(s) 208, 1126
OliI CACNNNNGTG 2 cut(s) 23, 726
PciSI GCTCTTC 1 cut(s) 1255
PdiI GCCGGC 1 cut(s) 1438
PfeI GAWTC 2 cut(s) 194, 1123
PflMI CCANNNNNTGG 1 cut(s) 917
PinAI ACCGGT 1 cut(s) 1048
PkrI GCNGC 3 cut(s) 249, 615, 909
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 1152
Psp6I CCWGG 2 cut(s) 598, 1265
PspFI CCCAGC 1 cut(s) 1276
PspGI CCWGG 2 cut(s) 598, 1265
PspN4I GGNNCC 3 cut(s) 581, 802, 1335
PspPI GGNCC 2 cut(s) 213, 419
PsuI RGATCY 1 cut(s) 1083
RsaI GTAC 5 cut(s) 11, 279, 343, 509, 942
RsaNI GTAC 5 cut(s) 10, 278, 342, 508, 941
RseI CAYNNNNRTG 2 cut(s) 23, 726
SacI GAGCTC 1 cut(s) 1152
SapI GCTCTTC 1 cut(s) 1255
SaqAI TTAA 3 cut(s) 14, 1227, 1428
SatI GCNGC 3 cut(s) 248, 614, 908
Sau3AI GATC 5 cut(s) 36, 532, 1083, 1269, 1495
Sau96I GGNCC 2 cut(s) 213, 419
ScaI AGTACT 2 cut(s) 279, 942
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 5 cut(s) 347, 584, 600, 865, 1267
SduI GDGCHC 2 cut(s) 1152, 1336
SfaNI GCATC 5 cut(s) 19, 234, 420, 977, 1054
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 2 cut(s) 208, 1126
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 23, 726
SmlI CTYRAG 3 cut(s) 281, 980, 1145
SmoI CTYRAG 3 cut(s) 281, 980, 1145
SpeI ACTAGT 1 cut(s) 1412
Sse9I AATT 8 cut(s) 76, 123, 555, 784, 790, 816, 1168, 1250
SsiI CCGC 5 cut(s) 96, 614, 679, 907, 1422
SspMI CTAG 3 cut(s) 5, 1413, 1460
SstI GAGCTC 1 cut(s) 1152
StyD4I CCNGG 5 cut(s) 345, 582, 598, 863, 1265
StyI CCWWGG 6 cut(s) 91, 216, 357, 658, 916, 946
TaaI ACNGT 5 cut(s) 22, 571, 711, 859, 1378
TaiI ACGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 35, 208, 1126
TasI AATT 8 cut(s) 76, 123, 555, 784, 790, 816, 1168, 1250
TatI WGTACW 4 cut(s) 9, 277, 507, 940
TauI GCSGC 2 cut(s) 616, 910
TfiI GAWTC 2 cut(s) 194, 1123
Tru1I TTAA 3 cut(s) 14, 1227, 1428
Tru9I TTAA 3 cut(s) 14, 1227, 1428
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 1235
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 1235
TspDTI ATGAA 5 cut(s) 57, 69, 471, 511, 1080
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 1 cut(s) 917
VpaK11BI GGWCC 1 cut(s) 213
XagI CCTNNNNNAGG 2 cut(s) 184, 208
XapI RAATTY 2 cut(s) 123, 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 1508
XspI CTAG 3 cut(s) 5, 1413, 1460
ZrmI AGTACT 2 cut(s) 279, 942
Zsp2I ATGCAT 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.