Rorug01G0371600

Transmembrane protein 87A-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
48524388 .. 48531737
7350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371600.1

Sequence Viewer

Length: 1443 bp
ATGGCAGCAGCTTCAAGTAATTCATATGGGCTCTGTGATGGTAACATGCCTTGCTTGCCAATCTTGAGCTCTGCTACAAAGTCTTGTGAAGCAAATCAGCTGCCCCCGGCAGCGGATACTATTAGTGTGAATGGCAGTGGGAGAGGTGCTATGAGTGGTGGGATTCGAACAAGCGTGAAGGGGTTCCTTAATGCAAAACGCCTGGCTTTGTCTGCAGAAATAGATACGGTGCATGAGACGAATGAGACCATCACTCGCAATTTCAGTGCACTCCAAGCTGCTGCTGATTCTGTGGATGAGAAGAAAGCACAAGAGAAGAGCATTGCTTCAATTTCATATGGCCTCAGTATCTATGATGTGCCTTCAATTCCTCGGACACAGAATGAGATCTTGCCAAGAAGATTCTTCTATAATGAACTGAAAACAGCGACCTGGAACTTTCATCCTCATAATAAGCTCGGTGAAGGTAGTTTTGGTCCTGTTTTTAAGGGGTGGGTTGATGACAATACATCAACAGCTGCCAAGCCTGGTACTGGCATGGTAATTGCTGTGAAGACAATTAAGCGAGGAGGTTTACAGGGTAACAAGGAATGGTTGACAGAAATTTACTACCTAGGAACGCTGCATCATCCAAATGTTTTGAAATTGTTGGGTTATTGCTTCGAGGATGACCACCGGCTTCTGGTTTATGAATTTATGGCTAAAGGAAGCTTGGAGTTTCATCTATTTAAATTTGAAATAGGGTTTTCTTACCTTGAACCACTTTCGTGGATCCTGCGTATGAAGATTGCCCTTGGTGCTGCCAAGTCTCTAGCATTTATTCATAATAGTGAGGGAAAAGTGATCCATCGGGACTTCAAAAGTTCGAATATCCTACTGGATTCAAACTACAATGCCAAACTCGCTGATTTTGGTTTTGCTAAGGACGGACCAGCAGGTGATAGTAGCCATGTCTCGACAAGGGTGATGGGGACATATGGATATGCAGCTCCAGAGTATGTTGCTACAGGTCATTTATCCTGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCTGGAAGACGAGTTCTGGATAATAACCGTCCACCCAGGGAACACAATTTAGTTGAATGGGCCAAACCTTATCTTGCCAGCAAAAGCAGAGCTCTCAAAATTTTTGATGCTCGTATTGAAGGCCAGTACTCTGTGGCAGGAGCTCTTAAAGCAGCTAACCTTGCAAATCGATGCATATCAGCAGAACCCGAGTTTAGGCCAAACATGAATGAGGTGGTCACAGCATTAGAGCAGCTTCAGGAATCTGGTGACATGGAGGGTTCGGGAATCTCCCAAAATGAGCCTTGCCAAACTCCTTGTGCCAATTCAAGCAATCGCAGGAGAAGCACAAGCTGGATCAGCTTCAGGCCATGTGCTTCCTGCAGCTATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

52.56

Weight (kDa)

8.22

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 148 - 429 3.4e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 150 - 432 4.2e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 926
Acc36I ACCTGC 1 cut(s) 926
AciI CCGC 1 cut(s) 113
AclWI GGATC 4 cut(s) 766, 779, 838, 1412
AcsI RAATTY 4 cut(s) 603, 692, 731, 1167
AcuI CTGAAG 2 cut(s) 1289, 1396
AfaI GTAC 2 cut(s) 532, 1196
AfiI CCNNNNNNNGG 4 cut(s) 112, 533, 682, 1263
AjnI CCWGG 4 cut(s) 201, 431, 526, 1103
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AleI CACNNNNGTG 1 cut(s) 766
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
Alw21I GWGCWC 4 cut(s) 71, 271, 1162, 1213
Alw26I GTCTC 4 cut(s) 230, 239, 813, 958
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 4 cut(s) 766, 779, 838, 1412
Ama87I CYCGRG 1 cut(s) 1256
AoxI GGCC 5 cut(s) 340, 1128, 1189, 1265, 1415
ApaLI GTGCAC 1 cut(s) 267
ApoI RAATTY 4 cut(s) 603, 692, 731, 1167
Asp700I GAANNNNTTC 1 cut(s) 182
AspA2I CCTAGG 1 cut(s) 613
AspS9I GGNCC 3 cut(s) 476, 929, 1128
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 4 cut(s) 473, 950, 976, 1328
AsuII TTCGAA 2 cut(s) 166, 866
AvaI CYCGRG 1 cut(s) 1256
AvaII GGWCC 2 cut(s) 476, 929
AvrII CCTAGG 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 771
BanII GRGCYC 4 cut(s) 33, 71, 1162, 1213
BbsI GAAGAC 2 cut(s) 560, 1081
Bbv12I GWGCWC 4 cut(s) 71, 271, 1162, 1213
BccI CCATC 4 cut(s) 32, 257, 855, 961
BciT130I CCWGG 4 cut(s) 203, 433, 528, 1105
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 4 cut(s) 230, 239, 813, 958
BfaI CTAG 2 cut(s) 614, 812
BfmI CTRYAG 3 cut(s) 213, 1005, 1429
BfuAI ACCTGC 1 cut(s) 926
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 387
BlnI CCTAGG 1 cut(s) 613
BmcAI AGTACT 1 cut(s) 1196
Bme1390I CCNGG 5 cut(s) 107, 203, 433, 528, 1105
Bme18I GGWCC 2 cut(s) 476, 929
BmeT110I CYCGRG 1 cut(s) 1256
BmgT120I GGNCC 3 cut(s) 476, 929, 1128
BmiI GGNNCC 2 cut(s) 185, 773
BmrFI CCNGG 5 cut(s) 107, 203, 433, 528, 1105
BmsI GCATC 3 cut(s) 634, 1165, 1229
BpiI GAAGAC 2 cut(s) 560, 1081
BpmI CTGGAG 1 cut(s) 975
Bpu10I CCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 2 cut(s) 166, 866
BpuEI CTTGAG 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 1237
BsaBI GATNNNNATC 1 cut(s) 1243
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 6 cut(s) 105, 371, 613, 793, 1103, 1104
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 533, 682, 1263
Bse118I RCCGGY 1 cut(s) 675
Bse1I ACTGG 3 cut(s) 538, 882, 1192
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 1243
BseBI CCWGG 4 cut(s) 203, 433, 528, 1105
BseCI ATCGAT 1 cut(s) 1237
BseDI CCNNGG 6 cut(s) 105, 371, 613, 793, 1103, 1104
BseGI GGATG 4 cut(s) 301, 442, 628, 673
BseJI GATNNNNATC 1 cut(s) 1243
BseLI CCNNNNNNNGG 4 cut(s) 112, 533, 682, 1263
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 3 cut(s) 538, 882, 1192
BseRI GAGGAG 1 cut(s) 582
BseSI GKGCMC 1 cut(s) 271
BshFI GGCC 5 cut(s) 342, 1130, 1191, 1267, 1417
BshVI ATCGAT 1 cut(s) 1237
BsiHKAI GWGCWC 4 cut(s) 71, 271, 1162, 1213
BsiHKCI CYCGRG 1 cut(s) 1256
BsiSI CCGG 2 cut(s) 107, 676
BslFI GGGAC 2 cut(s) 866, 985
BslI CCNNNNNNNGG 4 cut(s) 112, 533, 682, 1263
BsmAI GTCTC 4 cut(s) 230, 239, 813, 958
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 866, 985
BsnI GGCC 5 cut(s) 342, 1130, 1191, 1267, 1417
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 1256
Bsp119I TTCGAA 2 cut(s) 166, 866
Bsp1286I GDGCHC 5 cut(s) 33, 71, 271, 1162, 1213
Bsp143I GATC 4 cut(s) 387, 771, 843, 1404
BspACI CCGC 1 cut(s) 113
BspANI GGCC 5 cut(s) 342, 1130, 1191, 1267, 1417
BspCNI CTCAG 1 cut(s) 357
BspDI ATCGAT 1 cut(s) 1237
BspLI GGNNCC 2 cut(s) 185, 773
BspMAI CTGCAG 2 cut(s) 217, 1433
BspMI ACCTGC 1 cut(s) 926
BspPI GGATC 4 cut(s) 766, 779, 838, 1412
BspQI GCTCTTC 1 cut(s) 311
BspT104I TTCGAA 2 cut(s) 166, 866
BspTNI GGTCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 675
BsrI ACTGG 3 cut(s) 538, 882, 1192
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 6 cut(s) 105, 371, 613, 793, 1103, 1104
BssMI GATC 4 cut(s) 387, 771, 843, 1404
BssT1I CCWWGG 2 cut(s) 613, 793
Bst2UI CCWGG 4 cut(s) 203, 433, 528, 1105
Bst4CI ACNGT 2 cut(s) 229, 1097
Bst6I CTCTTC 1 cut(s) 311
BstBI TTCGAA 2 cut(s) 166, 866
BstC8I GCNNGC 2 cut(s) 56, 1147
BstDEI CTNAG 2 cut(s) 344, 921
BstF5I GGATG 4 cut(s) 301, 442, 628, 673
BstKTI GATC 4 cut(s) 390, 774, 846, 1407
BstMAI GTCTC 4 cut(s) 230, 239, 813, 958
BstMBI GATC 4 cut(s) 387, 771, 843, 1404
BstMWI GCNNNNNNNGC 9 cut(s) 55, 212, 275, 797, 902, 1217, 1229, 1392, 1407
BstNI CCWGG 4 cut(s) 203, 433, 528, 1105
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 5 cut(s) 105, 201, 431, 526, 1103
BstSFI CTRYAG 3 cut(s) 213, 1005, 1429
BstSLI GKGCMC 1 cut(s) 271
BstV2I GAAGAC 2 cut(s) 560, 1081
BstX2I RGATCY 2 cut(s) 387, 771
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 2 cut(s) 387, 771
Bsu15I ATCGAT 1 cut(s) 1237
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 5 cut(s) 342, 1130, 1191, 1267, 1417
BsuTUI ATCGAT 1 cut(s) 1237
BtsCI GGATG 4 cut(s) 301, 442, 628, 673
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 142, 271
BveI ACCTGC 1 cut(s) 926
Cac8I GCNNGC 2 cut(s) 56, 1147
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 3 cut(s) 476, 929, 1128
ClaI ATCGAT 1 cut(s) 1237
Csp6I GTAC 2 cut(s) 531, 1195
CviAII CATG 7 cut(s) 46, 233, 538, 950, 1273, 1321, 1419
CviQI GTAC 2 cut(s) 531, 1195
DdeI CTNAG 2 cut(s) 344, 921
DpnI GATC 4 cut(s) 389, 773, 845, 1406
DpnII GATC 4 cut(s) 387, 771, 843, 1404
DraI TTTAAA 1 cut(s) 730
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Ecl136II GAGCTC 3 cut(s) 69, 1160, 1211
Eco130I CCWWGG 2 cut(s) 613, 793
Eco24I GRGCYC 4 cut(s) 33, 71, 1162, 1213
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 476, 929
Eco53kI GAGCTC 3 cut(s) 69, 1160, 1211
Eco57I CTGAAG 2 cut(s) 1289, 1396
Eco88I CYCGRG 1 cut(s) 1256
EcoICRI GAGCTC 3 cut(s) 69, 1160, 1211
EcoRII CCWGG 4 cut(s) 201, 431, 526, 1103
EcoT14I CCWWGG 2 cut(s) 613, 793
EcoT22I ATGCAT 1 cut(s) 1244
EcoT38I GRGCYC 4 cut(s) 33, 71, 1162, 1213
ErhI CCWWGG 2 cut(s) 613, 793
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 7 cut(s) 49, 236, 541, 953, 1276, 1324, 1422
FaqI GGGAC 2 cut(s) 866, 985
FatI CATG 7 cut(s) 45, 232, 537, 949, 1272, 1320, 1418
FauNDI CATATG 3 cut(s) 25, 337, 976
FokI GGATG 4 cut(s) 308, 429, 615, 680
FriOI GRGCYC 4 cut(s) 33, 71, 1162, 1213
FspBI CTAG 2 cut(s) 614, 812
GsuI CTGGAG 1 cut(s) 975
HaeIII GGCC 5 cut(s) 342, 1130, 1191, 1267, 1417
HapII CCGG 2 cut(s) 107, 676
Hin1II CATG 7 cut(s) 49, 236, 541, 953, 1276, 1324, 1422
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 6 cut(s) 163, 287, 402, 881, 1310, 1335
HpaII CCGG 2 cut(s) 107, 676
HphI GGTGA 4 cut(s) 473, 950, 976, 1328
Hpy166II GTNNAC 4 cut(s) 269, 575, 597, 1100
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 8 cut(s) 64, 851, 955, 992, 1071, 1085, 1307, 1332
Hpy8I GTNNAC 4 cut(s) 269, 575, 597, 1100
HpyAV CCTTC 4 cut(s) 172, 372, 458, 1181
HpyCH4III ACNGT 2 cut(s) 229, 1097
HpyF10VI GCNNNNNNNGC 9 cut(s) 55, 212, 275, 797, 902, 1217, 1229, 1392, 1407
HpyF3I CTNAG 2 cut(s) 344, 921
Hsp92II CATG 7 cut(s) 49, 236, 541, 953, 1276, 1324, 1422
Kzo9I GATC 4 cut(s) 387, 771, 843, 1404
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 994, 1208
LweI GCATC 3 cut(s) 634, 1165, 1229
MaeI CTAG 2 cut(s) 614, 812
MaeIII GTNAC 4 cut(s) 41, 581, 1285, 1316
MalI GATC 4 cut(s) 389, 773, 845, 1406
MboI GATC 4 cut(s) 387, 771, 843, 1404
MboII GAAGA 7 cut(s) 313, 328, 397, 411, 565, 796, 1086
MflI RGATCY 2 cut(s) 387, 771
MhlI GDGCHC 5 cut(s) 33, 71, 271, 1162, 1213
Mph1103I ATGCAT 1 cut(s) 1244
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 5 cut(s) 189, 486, 561, 729, 1215
MslI CAYNNNNRTG 3 cut(s) 633, 766, 828
MspA1I CMGCKG 3 cut(s) 100, 113, 518
MspI CCGG 2 cut(s) 107, 676
MspR9I CCNGG 5 cut(s) 107, 203, 433, 528, 1105
MvaI CCWGG 4 cut(s) 203, 433, 528, 1105
MwoI GCNNNNNNNGC 9 cut(s) 55, 212, 275, 797, 902, 1217, 1229, 1392, 1407
NciI CCSGG 1 cut(s) 107
NdeI CATATG 3 cut(s) 25, 337, 976
NdeII GATC 4 cut(s) 387, 771, 843, 1404
NlaIII CATG 7 cut(s) 49, 236, 541, 953, 1276, 1324, 1422
NlaIV GGNNCC 2 cut(s) 185, 773
NmuCI GTSAC 2 cut(s) 1285, 1316
NsiI ATGCAT 1 cut(s) 1244
NspI RCATGY 1 cut(s) 49
NspV TTCGAA 2 cut(s) 166, 866
OliI CACNNNNGTG 1 cut(s) 766
PaqCI CACCTGC 1 cut(s) 926
PasI CCCWGGG 1 cut(s) 1104
PciSI GCTCTTC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 6 cut(s) 163, 287, 402, 881, 1310, 1335
Psp124BI GAGCTC 3 cut(s) 71, 1162, 1213
Psp6I CCWGG 4 cut(s) 201, 431, 526, 1103
PspGI CCWGG 4 cut(s) 201, 431, 526, 1103
PspN4I GGNNCC 2 cut(s) 185, 773
PspPI GGNCC 3 cut(s) 476, 929, 1128
PstI CTGCAG 2 cut(s) 217, 1433
PsuI RGATCY 2 cut(s) 387, 771
PvuII CAGCTG 2 cut(s) 100, 518
RsaI GTAC 2 cut(s) 532, 1196
RsaNI GTAC 2 cut(s) 531, 1195
RseI CAYNNNNRTG 3 cut(s) 633, 766, 828
SacI GAGCTC 3 cut(s) 71, 1162, 1213
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 5 cut(s) 189, 486, 561, 729, 1215
Sau3AI GATC 4 cut(s) 387, 771, 843, 1404
Sau96I GGNCC 3 cut(s) 476, 929, 1128
ScaI AGTACT 1 cut(s) 1196
ScrFI CCNGG 5 cut(s) 107, 203, 433, 528, 1105
SduI GDGCHC 5 cut(s) 33, 71, 271, 1162, 1213
SfaNI GCATC 3 cut(s) 634, 1165, 1229
SfcI CTRYAG 3 cut(s) 213, 1005, 1429
SfuI TTCGAA 2 cut(s) 166, 866
SinI GGWCC 2 cut(s) 476, 929
SmiI ATTTAAAT 1 cut(s) 730
SmiMI CAYNNNNRTG 3 cut(s) 633, 766, 828
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 614, 812
SstI GAGCTC 3 cut(s) 71, 1162, 1213
StyD4I CCNGG 5 cut(s) 105, 201, 431, 526, 1103
StyI CCWWGG 2 cut(s) 613, 793
SwaI ATTTAAAT 1 cut(s) 730
TaaI ACNGT 2 cut(s) 229, 1097
TaqI TCGA 5 cut(s) 166, 663, 866, 956, 1237
TatI WGTACW 1 cut(s) 1194
TfiI GAWTC 6 cut(s) 163, 287, 402, 881, 1310, 1335
Tru1I TTAA 5 cut(s) 189, 486, 561, 729, 1215
Tru9I TTAA 5 cut(s) 189, 486, 561, 729, 1215
TscAI CASTG 2 cut(s) 142, 271
TseFI GTSAC 2 cut(s) 1285, 1316
Tsp45I GTSAC 2 cut(s) 1285, 1316
TspDTI ATGAA 9 cut(s) 12, 324, 429, 431, 705, 710, 797, 812, 1289
TspGWI ACGGA 1 cut(s) 942
TspRI CASTG 2 cut(s) 142, 271
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 476, 929
XapI RAATTY 4 cut(s) 603, 692, 731, 1167
XceI RCATGY 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 614, 812
ZrmI AGTACT 1 cut(s) 1196
Zsp2I ATGCAT 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.