Rh1BG343700

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003014
Physical Location & Seq
Reverse (-)
47689062 .. 47692607
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG343700.1

Sequence Viewer

Length: 1452 bp
ATGGGTCACAGAGAGAGCATCAAGTATGATCTTCATTCAAATGGGTTTATAATCATTTTGATGCTAGTGTACTTAAACACCTTGGTGGATGCTTCGATCCATGAATACCAAGATGACACCTTTATACGTCGTTCCAATTCATTCTTCTTCCATGGCGGAAGTGAGGGTCTCTATGCTTCCAAAATTCACTCTGGTAATGACAAACTCGCTTCTGAAGACAAGACCATTGATGGCAAGTCCTTTATCAGGTTTGAATCTATCACCTTTCGAAGGACCAAGGAGTCTGCTGAAAAGAAGAATGAGATGCAGCAGAGAACTGGCTTGGTTGAGGCTATAGTACTTGAGGTTAGAGACAGGGAGAAGATTGGGGGTTCTTATTTGAACTCTGAGGCAATATGCTGTACCCCGGAGCTTTCCAAGGATGGTTCGTGCAAGGTGGGAGAGGTTATCATCCAGCAAAAACCCGACAACCCTGATGGGCCAAAAAGGATGCAGACCTTCTTTGAGGGGAAAAATGAAGAGACCAACATGGAACTTCAGACTATTCAGATCAACAGAACTGGAATGTACTATCTTTATTTCATGTTTTGTGATCCAGAACTTGTTGGCACATCAATTAGTGGAAGAACTGTTTGGAGGAACCCGGATGGTTATTTACCTGGAAAGATGTCGCCGCTGATGACATTTTTCGGCCTCGTGTCTTTAGCTTACCTTGTCCTTGGTCTTTTCTGGTTTCTCCGCTTTGTGCAGTATTGGAAAGATATAATACAGTTGCACTACCACATCAGTGCTGTTATTGGTCTTGGAATGTGTGAGATGGCTCTATGGTATTTTGAATATGCAAATTTCAATTCAACCGGAACCAGACCAATGGGAATTACCATGTGGGCAGTAACCTTCGGTGCTGTCAAAAAAACTGTTTCCCGGCTTCTTCTTCTGGTGGTTTCAATGGGGTATGGTGTTGTGCGGCCAACCCTTGGTGGCATTACCACGAAAGTAGTACTCCTTGGTGTGATATACTTTGTAGCATCAGAAGCACTTGAGCTTGTTGAACATTTGGGAAATATCAATGACTTTTCTGGAAAAACAAGGCTCTTTCTGGTGCTACCGGTTGCTCTATTGGATGCCTGTTTTATTCTTTGGATCTTTTCATCACTATCTAAAACTTTGGAGAAGCTTCAGATTCGAAGAAGCATGGCCAAACTTGAGCTCTACCGGAAGTTTACCAATTCCCTTGCAGTATCAGTATTGCTGTCTGTCGCTTGGATTGGTTATGAGGTTCGCTTTCTTTTATTTATTGTTCCTTTCTTCTTCCACCCAACTGGCTTTTTAACAGTGATCATTAATCCTCAAGTAGTTCCTGTTCAGCAAGGATGCCCAAATCTCTTCACTATCTTTTTGTTAAGCAAAGTCTATAAGCACTTTACCCTTAGGATATTGCTGTCCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

483

Amino Acids

54.93

Weight (kDa)

8.76

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 225 - 429 5.6e-75 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AasI GACNNNNNNGTC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 977
AciI CCGC 5 cut(s) 156, 674, 739, 967, 1446
AclWI GGATC 3 cut(s) 91, 587, 1151
AcoI YGGCCR 2 cut(s) 968, 1197
AcsI RAATTY 2 cut(s) 183, 844
AcuI CTGAAG 3 cut(s) 234, 521, 1163
AfaI GTAC 5 cut(s) 71, 339, 403, 569, 1002
AfiI CCNNNNNNNGG 3 cut(s) 246, 270, 977
AgeI ACCGGT 1 cut(s) 1108
AgsI TTSAA 8 cut(s) 39, 254, 382, 836, 850, 855, 948, 1052
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 616, 648
AleI CACNNNNGTG 2 cut(s) 83, 786
AluBI AGCT 5 cut(s) 412, 707, 1045, 1177, 1210
AluI AGCT 5 cut(s) 412, 707, 1045, 1177, 1210
Alw21I GWGCWC 1 cut(s) 1212
Alw26I GTCTC 3 cut(s) 173, 345, 515
AlwI GGATC 3 cut(s) 91, 587, 1151
AoxI GGCC 4 cut(s) 479, 691, 968, 1197
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 2 cut(s) 183, 844
AseI ATTAAT 1 cut(s) 1344
AsiGI ACCGGT 1 cut(s) 1108
AspS9I GGNCC 2 cut(s) 273, 479
AsuC2I CCSGG 3 cut(s) 407, 644, 925
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 2 cut(s) 268, 1186
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 1430
BalI TGGCCA 1 cut(s) 1199
BanII GRGCYC 1 cut(s) 1212
BauI CACGAG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 1212
BbvI GCAGC 1 cut(s) 319
BccI CCATC 5 cut(s) 224, 416, 470, 641, 811
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 1338
BcnI CCSGG 3 cut(s) 407, 644, 925
BcoDI GTCTC 3 cut(s) 173, 345, 515
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 3 cut(s) 308, 674, 968
BlsI GCNGC 3 cut(s) 309, 675, 969
BmcAI AGTACT 2 cut(s) 339, 1002
Bme1390I CCNGG 4 cut(s) 407, 644, 660, 925
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 273, 479
BmiI GGNNCC 2 cut(s) 641, 862
BmrFI CCNGG 4 cut(s) 407, 644, 660, 925
BmsI GCATC 8 cut(s) 27, 51, 79, 294, 480, 1037, 1114, 1364
BpiI GAAGAC 1 cut(s) 222
Bpu14I TTCGAA 2 cut(s) 268, 1186
BpuEI CTTGAG 4 cut(s) 362, 1061, 1226, 1335
BpuMI CCSGG 3 cut(s) 407, 644, 925
BsaI GGTCTC 2 cut(s) 173, 515
BsaJI CCNNGG 8 cut(s) 81, 151, 276, 405, 417, 718, 976, 1006
BsaWI WCCGGW 3 cut(s) 857, 1108, 1215
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 270, 977
Bse118I RCCGGY 1 cut(s) 1108
Bse1I ACTGG 3 cut(s) 322, 565, 1327
Bse21I CCTNAGG 1 cut(s) 1430
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 8 cut(s) 81, 151, 276, 405, 417, 718, 976, 1006
BseGI GGATG 7 cut(s) 94, 427, 450, 495, 652, 1129, 1379
BseLI CCNNNNNNNGG 3 cut(s) 246, 270, 977
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 3 cut(s) 322, 565, 1327
BseXI GCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 4 cut(s) 481, 693, 970, 1199
BshTI ACCGGT 1 cut(s) 1108
BsiHKAI GWGCWC 1 cut(s) 1212
BsiSI CCGG 6 cut(s) 407, 644, 858, 925, 1109, 1216
BslI CCNNNNNNNGG 3 cut(s) 246, 270, 977
BsmAI GTCTC 3 cut(s) 173, 345, 515
BsnI GGCC 4 cut(s) 481, 693, 970, 1199
Bso31I GGTCTC 2 cut(s) 173, 515
Bsp119I TTCGAA 2 cut(s) 268, 1186
Bsp1286I GDGCHC 1 cut(s) 1212
Bsp143I GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 5 cut(s) 156, 674, 739, 967, 1446
BspANI GGCC 4 cut(s) 481, 693, 970, 1199
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 641, 862
BspPI GGATC 3 cut(s) 91, 587, 1151
BspT104I TTCGAA 2 cut(s) 268, 1186
BspTNI GGTCTC 2 cut(s) 173, 515
BsrFI RCCGGY 1 cut(s) 1108
BsrI ACTGG 3 cut(s) 322, 565, 1327
BssAI RCCGGY 1 cut(s) 1108
BssECI CCNNGG 8 cut(s) 81, 151, 276, 405, 417, 718, 976, 1006
BssMI GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
BssSI CACGAG 1 cut(s) 695
BssT1I CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 4 cut(s) 631, 771, 919, 1336
Bst6I CTCTTC 2 cut(s) 513, 1391
BstBI TTCGAA 2 cut(s) 268, 1186
BstDEI CTNAG 2 cut(s) 387, 1430
BstDSI CCRYGG 1 cut(s) 151
BstENI CCTNNNNNAGG 2 cut(s) 244, 268
BstF5I GGATG 7 cut(s) 94, 427, 450, 495, 652, 1129, 1379
BstKTI GATC 6 cut(s) 31, 99, 552, 595, 1146, 1341
BstMAI GTCTC 3 cut(s) 173, 345, 515
BstMBI GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
BstMWI GCNNNNNNNGC 1 cut(s) 1034
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 4 cut(s) 405, 642, 658, 923
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 1143
BstXI CCANNNNNNTGG 2 cut(s) 871, 1322
BstYI RGATCY 1 cut(s) 1143
Bsu36I CCTNAGG 1 cut(s) 1430
BsuRI GGCC 4 cut(s) 481, 693, 970, 1199
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 7 cut(s) 94, 427, 450, 495, 652, 1129, 1379
BtsIMutI CAGTG 2 cut(s) 793, 1341
Cfr10I RCCGGY 1 cut(s) 1108
Cfr13I GGNCC 2 cut(s) 273, 479
Csp6I GTAC 5 cut(s) 70, 338, 402, 568, 1001
CspAI ACCGGT 1 cut(s) 1108
CviAII CATG 6 cut(s) 101, 152, 529, 583, 883, 1195
CviQI GTAC 5 cut(s) 70, 338, 402, 568, 1001
DdeI CTNAG 2 cut(s) 387, 1430
DpnI GATC 6 cut(s) 30, 98, 551, 594, 1145, 1340
DpnII GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 2 cut(s) 968, 1197
Eam1104I CTCTTC 2 cut(s) 513, 1391
EarI CTCTTC 2 cut(s) 513, 1391
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 1210
Eco130I CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
Eco24I GRGCYC 1 cut(s) 1212
Eco31I GGTCTC 2 cut(s) 173, 515
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 1210
Eco57I CTGAAG 3 cut(s) 234, 521, 1163
Eco81I CCTNAGG 1 cut(s) 1430
EcoICRI GAGCTC 1 cut(s) 1210
EcoNI CCTNNNNNAGG 2 cut(s) 244, 268
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
FaeI CATG 6 cut(s) 104, 155, 532, 586, 886, 1198
FatI CATG 6 cut(s) 100, 151, 528, 582, 882, 1194
FbaI TGATCA 1 cut(s) 1338
Fnu4HI GCNGC 3 cut(s) 308, 674, 968
FokI GGATG 7 cut(s) 101, 434, 437, 502, 659, 1136, 1386
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 3 cut(s) 308, 674, 968
FspBI CTAG 1 cut(s) 65
GluI GCNGC 3 cut(s) 308, 674, 968
HaeIII GGCC 4 cut(s) 481, 693, 970, 1199
HapII CCGG 6 cut(s) 407, 644, 858, 925, 1109, 1216
Hin1II CATG 6 cut(s) 104, 155, 532, 586, 886, 1198
HindIII AAGCTT 1 cut(s) 1175
HinfI GANTC 3 cut(s) 254, 281, 1183
HpaII CCGG 6 cut(s) 407, 644, 858, 925, 1109, 1216
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 70, 1224
Hpy188I TCNGA 6 cut(s) 214, 388, 540, 549, 1033, 1182
Hpy188III TCNNGA 2 cut(s) 596, 1080
Hpy8I GTNNAC 2 cut(s) 70, 1224
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 264, 508, 907
HpyCH4III ACNGT 4 cut(s) 631, 771, 919, 1336
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 7 cut(s) 307, 432, 493, 748, 775, 842, 1238
HpyF10VI GCNNNNNNNGC 1 cut(s) 1034
HpyF3I CTNAG 2 cut(s) 387, 1430
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 6 cut(s) 104, 155, 532, 586, 886, 1198
Ksp22I TGATCA 1 cut(s) 1338
Kzo9I GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 8 cut(s) 27, 51, 79, 294, 480, 1037, 1114, 1364
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 5, 892
MalI GATC 6 cut(s) 30, 98, 551, 594, 1145, 1340
MboI GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
MflI RGATCY 1 cut(s) 1143
MhlI GDGCHC 1 cut(s) 1212
MlsI TGGCCA 1 cut(s) 1199
MluCI AATT 7 cut(s) 136, 183, 615, 844, 850, 876, 1228
MluNI TGGCCA 1 cut(s) 1199
MlyI GAGTC 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 1199
MscI TGGCCA 1 cut(s) 1199
MseI TTAA 4 cut(s) 74, 1331, 1344, 1403
MslI CAYNNNNRTG 4 cut(s) 39, 59, 83, 786
Msp20I TGGCCA 1 cut(s) 1199
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 6 cut(s) 407, 644, 858, 925, 1109, 1216
MspR9I CCNGG 4 cut(s) 407, 644, 660, 925
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 1 cut(s) 1034
NciI CCSGG 3 cut(s) 407, 644, 925
NcoI CCATGG 1 cut(s) 151
NdeII GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
NlaIII CATG 6 cut(s) 104, 155, 532, 586, 886, 1198
NlaIV GGNNCC 2 cut(s) 641, 862
NmuCI GTSAC 1 cut(s) 5
NspV TTCGAA 2 cut(s) 268, 1186
OliI CACNNNNGTG 2 cut(s) 83, 786
PfeI GAWTC 2 cut(s) 254, 1183
PflMI CCANNNNNTGG 1 cut(s) 977
PinAI ACCGGT 1 cut(s) 1108
PkrI GCNGC 3 cut(s) 309, 675, 969
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 1344
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 1212
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 2 cut(s) 641, 862
PspPI GGNCC 2 cut(s) 273, 479
PsrI GAACNNNNNNTAC 2 cut(s) 1347, 1379
PsuI RGATCY 1 cut(s) 1143
RsaI GTAC 5 cut(s) 71, 339, 403, 569, 1002
RsaNI GTAC 5 cut(s) 70, 338, 402, 568, 1001
RseI CAYNNNNRTG 4 cut(s) 39, 59, 83, 786
SacI GAGCTC 1 cut(s) 1212
SaqAI TTAA 4 cut(s) 74, 1331, 1344, 1403
SatI GCNGC 3 cut(s) 308, 674, 968
Sau3AI GATC 6 cut(s) 28, 96, 549, 592, 1143, 1338
Sau96I GGNCC 2 cut(s) 273, 479
ScaI AGTACT 2 cut(s) 339, 1002
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 407, 644, 660, 925
SduI GDGCHC 1 cut(s) 1212
SfaNI GCATC 8 cut(s) 27, 51, 79, 294, 480, 1037, 1114, 1364
SfcI CTRYAG 1 cut(s) 333
SfuI TTCGAA 2 cut(s) 268, 1186
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 4 cut(s) 39, 59, 83, 786
SmlI CTYRAG 4 cut(s) 341, 1040, 1205, 1350
SmoI CTYRAG 4 cut(s) 341, 1040, 1205, 1350
Sse9I AATT 7 cut(s) 136, 183, 615, 844, 850, 876, 1228
SsiI CCGC 5 cut(s) 156, 674, 739, 967, 1446
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 1212
StyD4I CCNGG 4 cut(s) 405, 642, 658, 923
StyI CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
TaaI ACNGT 4 cut(s) 631, 771, 919, 1336
TaiI ACGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 95, 268, 1186
TasI AATT 7 cut(s) 136, 183, 615, 844, 850, 876, 1228
TatI WGTACW 4 cut(s) 69, 337, 567, 1000
TauI GCSGC 2 cut(s) 676, 970
TfiI GAWTC 2 cut(s) 254, 1183
Tru1I TTAA 4 cut(s) 74, 1331, 1344, 1403
Tru9I TTAA 4 cut(s) 74, 1331, 1344, 1403
TscAI CASTG 2 cut(s) 793, 1341
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 6 cut(s) 23, 117, 129, 531, 571, 1140
TspRI CASTG 2 cut(s) 793, 1341
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 273
VspI ATTAAT 1 cut(s) 1344
XagI CCTNNNNNAGG 2 cut(s) 244, 268
XapI RAATTY 2 cut(s) 183, 844
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 2 cut(s) 339, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.