Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009326

Physical Location & Seq

Genomic Coordinates Reverse (-)

31083111 .. 31087088

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1231200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTGTTTCAGGTGGGAGGCCAAGGGACTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAGCAGCTCCCTGCCAGTCTCCGCGCCGCCCTCACCTATTCCATCGGCGTATTAGCTTTACGAAGACCCTTCCTCCACAGGGTTCTGGACTACGAGGACGAGTTCTTCTCCTTGCTCATGCTCGTCCTCGAAACTCACAGCTTACGAACTACAGATGCTTCGTTTTCGGAATCGTTGTACGGGTTGAGAAGGAGGGCTGTGAAGATAAAAGCTATGAGGAATGATGATCCTCGACTGAACCCAGGTGATGAAATTCAGCATTCTGGCTTAGAGAAGCGCCAGAGACTTCTTTCGGTTGTGTTTTTGGTTGTGTTGCCTTACTTTAAGTCAAAACTGCATTCAATCTACAATAGAGAAAGGGAAGCCAGACTTCAAGCGAGTTTATGGGGACACGTTGATGAAAGATTTGATGATGCTGACATAATTGATAGAGGAGAAGATGTTGTTGTTTCACGGGGAACTTCAGATATGGTCGTATCAGTTAGGACGCGTTTGACCACAAAGATCCAGGAATTTATAGGTGCTTGCTACCCATTGCTGCATGCTAGTAGTGAAGGATTTTCGTTCGCTTACCAGATGTTATACTTGTTGGATGCAACTGGATTCTATTCCTTAGGATTACATGTGCTTGGGATTCATGTCTGTCGTGCTACAGGGCAAGAACTGATGGATACTTCTTCTAGAATTTCAAAAACAAGAACCCGTGAACGTGAGAGACTTCGTGGCCCTCCATGGTTGAAGGCATTACAAGGAGCGTTGCTCAGCGGTACATACACTGTGCTTGATTATGCACAGACTGGGTTAATTGCTGCGGTTTTCTTTTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAAGAGAGAATGTCAGCTCCAACCATATACCCTCCACCTCCTCCACCTCCACCTCCGCAGGTTGCCAAAGAGGGGATTCCACTGCCACCCGATAGAGCTCTTTGTCCTCTCTGCTCACAGAGGCGTGCGAATCCATCTGTAATTACAGTTTCTGGGTTTGTCTTCTGCTATGCCTGCATCTTCAAGTATGTTTCTCAGTATAAGAGATGTCCGATCACATTGATGCCTACTACTGTCGATCAGATTAGGAGACTCTTTCACGACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4_2

Protein Analysis

395

Amino Acids

44.77

Weight (kDa)

9.09

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex2_Pex12	PF04757	21 - 304	1.3e-40	Pex2 / Pex12 amino terminal region
zf-C3HC4_2	PF13923	340 - 377	7.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04460
fragaria_vesca	FvH4_6g01740
malus_domestica	MD00G1148800.v1.1 MD04G1231200.v1.1
prunus_persica	Prupe.6G350900_v2.0.a1
pyrus_communis	pycom04g20480 pycom12g22930
rosa_chinensis	RchiOBHm_Chr3g0449481
rosa_laevigata	RLG00000025823 RLG00000025826
rosa_multiflora	Rmu_sc0000430.1_g000019 Rmu_sc0019012.1_g000002 Rmu_sc0039372.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427440
rosa_rugosa	Rorug02G0621500
rosa_samantha	Rh3AG019300 Rh3AG019700 Rh3BG019700 Rh3CG018400 Rh3DG019700
rosa_wichuraiana	Rw3G001530 Rw3G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	964
Acc65I	GGTACC	1 cut(s)	903
AccB1I	GGYRCC	1 cut(s)	903
AccII	CGCG	2 cut(s)	84, 550
AciI	CCGC	7 cut(s)	53, 56, 82, 87, 825, 872, 971
AclWI	GGATC	2 cut(s)	281, 559
AcsI	RAATTY	3 cut(s)	312, 572, 744
AcuI	CTGAAG	2 cut(s)	507, 936
AdeI	CACNNNGTG	1 cut(s)	1180
AfaI	GTAC	3 cut(s)	239, 829, 905
AfiI	CCNNNNNNNGG	2 cut(s)	139, 987
AflIII	ACRYGT	4 cut(s)	451, 548, 682, 1179
AgsI	TTSAA	5 cut(s)	402, 434, 750, 799, 1099
AjiI	CACGTC	1 cut(s)	1180
AjnI	CCWGG	2 cut(s)	301, 567
AluBI	AGCT	6 cut(s)	67, 116, 201, 272, 932, 1013
AluI	AGCT	6 cut(s)	67, 116, 201, 272, 932, 1013
Alw21I	GWGCWC	1 cut(s)	1015
Alw26I	GTCTC	4 cut(s)	83, 337, 769, 1159
AlwI	GGATC	2 cut(s)	281, 559
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	2 cut(s)	19, 784
ApeKI	GCWGC	3 cut(s)	64, 598, 869
ApoI	RAATTY	3 cut(s)	312, 572, 744
Asp718I	GGTACC	1 cut(s)	903
AspLEI	GCGC	2 cut(s)	86, 339
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	85, 317
AxyI	CCTNAGG	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	903
BanII	GRGCYC	1 cut(s)	1015
BbsI	GAAGAC	2 cut(s)	130, 1069
Bbv12I	GWGCWC	1 cut(s)	1015
BbvI	GCAGC	3 cut(s)	76, 585, 856
BccI	CCATC	5 cut(s)	43, 110, 721, 886, 1057
BciT130I	CCWGG	2 cut(s)	303, 569
BciVI	GTATCC	1 cut(s)	724
BcoDI	GTCTC	4 cut(s)	83, 337, 769, 1159
BfaI	CTAG	2 cut(s)	606, 741
BfmI	CTRYAG	2 cut(s)	210, 711
BfoI	RGCGCY	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	6 cut(s)	54, 57, 65, 87, 599, 870
BlpI	GCTNAGC	2 cut(s)	60, 821
BlsI	GCNGC	6 cut(s)	55, 58, 66, 88, 600, 871
Bme1390I	CCNGG	2 cut(s)	303, 569
BmgBI	CACGTC	1 cut(s)	1180
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	1 cut(s)	905
BmrFI	CCNGG	2 cut(s)	303, 569
BmrI	ACTGGG	1 cut(s)	867
BmsI	GCATC	5 cut(s)	205, 463, 643, 1101, 1128
BmuI	ACTGGG	1 cut(s)	867
BpiI	GAAGAC	2 cut(s)	130, 1069
BplI	GAGNNNNNCTC	4 cut(s)	152, 184, 804, 836
Bpu1102I	GCTNAGC	2 cut(s)	60, 821
BsaJI	CCNNGG	3 cut(s)	22, 301, 791
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 987
Bse1I	ACTGG	3 cut(s)	75, 664, 862
Bse21I	CCTNAGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	303, 569
BseDI	CCNNGG	3 cut(s)	22, 301, 791
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	139, 987
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	3 cut(s)	74, 835, 1124
BseNI	ACTGG	3 cut(s)	75, 664, 862
BseRI	GAGGAG	2 cut(s)	507, 945
BseXI	GCAGC	3 cut(s)	76, 585, 856
Bsh1236I	CGCG	2 cut(s)	84, 550
BshFI	GGCC	2 cut(s)	21, 786
BshNI	GGYRCC	1 cut(s)	903
BsiHKAI	GWGCWC	1 cut(s)	1015
BslFI	GGGAC	2 cut(s)	40, 462
BslI	CCNNNNNNNGG	2 cut(s)	139, 987
BsmAI	GTCTC	4 cut(s)	83, 337, 769, 1159
BsmFI	GGGAC	2 cut(s)	40, 462
BsmI	GAATGC	2 cut(s)	319, 397
BsnI	GGCC	2 cut(s)	21, 786
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp143I	GATC	4 cut(s)	286, 564, 1128, 1153
Bsp1720I	GCTNAGC	2 cut(s)	60, 821
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	7 cut(s)	53, 56, 82, 87, 825, 872, 971
BspANI	GGCC	2 cut(s)	21, 786
BspCNI	CTCAG	3 cut(s)	73, 834, 1123
BspFNI	CGCG	2 cut(s)	84, 550
BspLI	GGNNCC	1 cut(s)	905
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	2 cut(s)	281, 559
BspT107I	GGYRCC	1 cut(s)	903
BsrDI	GCAATG	1 cut(s)	593
BsrI	ACTGG	3 cut(s)	75, 664, 862
BssECI	CCNNGG	3 cut(s)	22, 301, 791
BssMI	GATC	4 cut(s)	286, 564, 1128, 1153
BssT1I	CCWWGG	2 cut(s)	22, 791
Bst2UI	CCWGG	2 cut(s)	303, 569
Bst4CI	ACNGT	3 cut(s)	838, 1063, 1150
Bst6I	CTCTTC	1 cut(s)	912
BstC8I	GCNNGC	4 cut(s)	586, 603, 1041, 1090
BstDEI	CTNAG	5 cut(s)	60, 328, 673, 821, 1110
BstDSI	CCRYGG	1 cut(s)	791
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	2 cut(s)	84, 550
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	86, 339
BstKTI	GATC	4 cut(s)	289, 567, 1131, 1156
BstMAI	GTCTC	4 cut(s)	83, 337, 769, 1159
BstMBI	GATC	4 cut(s)	286, 564, 1128, 1153
BstMWI	GCNNNNNNNGC	1 cut(s)	1089
BstNI	CCWGG	2 cut(s)	303, 569
BstNSI	RCATGY	2 cut(s)	605, 686
BstSCI	CCNGG	2 cut(s)	301, 567
BstSFI	CTRYAG	2 cut(s)	210, 711
BstUI	CGCG	2 cut(s)	84, 550
BstV1I	GCAGC	3 cut(s)	76, 585, 856
BstV2I	GAAGAC	2 cut(s)	130, 1069
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	21, 786
BtgI	CCRYGG	1 cut(s)	791
BtrI	CACGTC	1 cut(s)	1180
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	995
BtsIMutI	CAGTG	2 cut(s)	834, 995
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	4 cut(s)	586, 603, 1041, 1090
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	2 cut(s)	86, 339
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	3 cut(s)	238, 828, 904
CviAII	CATG	5 cut(s)	178, 602, 683, 698, 792
CviQI	GTAC	3 cut(s)	238, 828, 904
DdeI	CTNAG	5 cut(s)	60, 328, 673, 821, 1110
DpnI	GATC	4 cut(s)	288, 566, 1130, 1155
DpnII	GATC	4 cut(s)	286, 564, 1128, 1153
DraI	TTTAAA	1 cut(s)	886
DraIII	CACNNNGTG	1 cut(s)	1180
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Ecl136II	GAGCTC	1 cut(s)	1013
Eco130I	CCWWGG	2 cut(s)	22, 791
Eco24I	GRGCYC	1 cut(s)	1015
Eco53kI	GAGCTC	1 cut(s)	1013
Eco57I	CTGAAG	2 cut(s)	507, 936
Eco81I	CCTNAGG	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	1013
EcoRII	CCWGG	2 cut(s)	301, 567
EcoT14I	CCWWGG	2 cut(s)	22, 791
EcoT38I	GRGCYC	1 cut(s)	1015
ErhI	CCWWGG	2 cut(s)	22, 791
FaeI	CATG	5 cut(s)	181, 605, 686, 701, 795
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FaqI	GGGAC	2 cut(s)	40, 462
FatI	CATG	5 cut(s)	177, 601, 682, 697, 791
Fnu4HI	GCNGC	6 cut(s)	54, 57, 65, 87, 599, 870
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	1015
Fsp4HI	GCNGC	6 cut(s)	54, 57, 65, 87, 599, 870
FspBI	CTAG	2 cut(s)	606, 741
GlaI	GCGC	2 cut(s)	85, 338
GluI	GCNGC	6 cut(s)	54, 57, 65, 87, 599, 870
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	21, 786
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	2 cut(s)	86, 339
Hin1II	CATG	5 cut(s)	181, 605, 686, 701, 795
Hin6I	GCGC	2 cut(s)	84, 337
HinP1I	GCGC	2 cut(s)	84, 337
HinfI	GANTC	7 cut(s)	28, 230, 663, 694, 991, 1045, 1167
HphI	GGTGA	2 cut(s)	85, 317
Hpy166II	GTNNAC	1 cut(s)	767
Hpy188I	TCNGA	4 cut(s)	229, 526, 1128, 1158
Hpy188III	TCNNGA	4 cut(s)	46, 146, 741, 1175
Hpy8I	GTNNAC	1 cut(s)	767
Hpy99I	CGWCG	1 cut(s)	1181
HpyAV	CCTTC	5 cut(s)	49, 139, 243, 608, 793
HpyCH4III	ACNGT	3 cut(s)	838, 1063, 1150
HpyCH4IV	ACGT	3 cut(s)	453, 769, 1179
HpyCH4V	TGCA	5 cut(s)	397, 601, 656, 851, 1092
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1089
HpyF3I	CTNAG	5 cut(s)	60, 328, 673, 821, 1110
HpySE526I	ACGT	3 cut(s)	453, 769, 1179
Hsp92II	CATG	5 cut(s)	181, 605, 686, 701, 795
HspAI	GCGC	2 cut(s)	84, 337
KpnI	GGTACC	1 cut(s)	907
Kzo9I	GATC	4 cut(s)	286, 564, 1128, 1153
LmnI	GCTCC	3 cut(s)	72, 812, 937
Lsp1109I	GCAGC	3 cut(s)	76, 585, 856
LweI	GCATC	5 cut(s)	205, 463, 643, 1101, 1128
MaeI	CTAG	2 cut(s)	606, 741
MaeII	ACGT	3 cut(s)	453, 769, 1179
MalI	GATC	4 cut(s)	288, 566, 1130, 1155
MboI	GATC	4 cut(s)	286, 564, 1128, 1153
MboII	GAAGA	9 cut(s)	34, 135, 157, 274, 509, 729, 929, 1069, 1087
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	1015
MluCI	AATT	6 cut(s)	312, 483, 572, 744, 864, 1056
MluI	ACGCGT	1 cut(s)	548
MlyI	GAGTC	2 cut(s)	22, 1161
MmeI	TCCRAC	2 cut(s)	630, 959
MseI	TTAA	3 cut(s)	384, 863, 885
MslI	CAYNNNNRTG	2 cut(s)	456, 1136
MspA1I	CMGCKG	1 cut(s)	825
MspR9I	CCNGG	2 cut(s)	303, 569
Mva1269I	GAATGC	2 cut(s)	319, 397
MvaI	CCWGG	2 cut(s)	303, 569
MvnI	CGCG	2 cut(s)	84, 550
MwoI	GCNNNNNNNGC	1 cut(s)	1089
NcoI	CCATGG	1 cut(s)	791
NdeII	GATC	4 cut(s)	286, 564, 1128, 1153
NlaIII	CATG	5 cut(s)	181, 605, 686, 701, 795
NlaIV	GGNNCC	1 cut(s)	905
NspI	RCATGY	2 cut(s)	605, 686
PaeI	GCATGC	1 cut(s)	605
PciI	ACATGT	1 cut(s)	682
PctI	GAATGC	2 cut(s)	319, 397
PfeI	GAWTC	5 cut(s)	230, 663, 694, 991, 1045
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	55, 58, 66, 88, 600, 871
PleI	GAGTC	2 cut(s)	22, 1161
PpsI	GAGTC	2 cut(s)	22, 1161
PscI	ACATGT	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	1015
Psp6I	CCWGG	2 cut(s)	301, 567
PspGI	CCWGG	2 cut(s)	301, 567
PspN4I	GGNNCC	1 cut(s)	905
PspPI	GGNCC	1 cut(s)	785
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	3 cut(s)	239, 829, 905
RsaNI	GTAC	3 cut(s)	238, 828, 904
RseI	CAYNNNNRTG	2 cut(s)	456, 1136
SacI	GAGCTC	1 cut(s)	1015
SaqAI	TTAA	3 cut(s)	384, 863, 885
SatI	GCNGC	6 cut(s)	54, 57, 65, 87, 599, 870
Sau3AI	GATC	4 cut(s)	286, 564, 1128, 1153
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	2 cut(s)	22, 1161
ScrFI	CCNGG	2 cut(s)	303, 569
SduI	GDGCHC	1 cut(s)	1015
SfaNI	GCATC	5 cut(s)	205, 463, 643, 1101, 1128
SfcI	CTRYAG	2 cut(s)	210, 711
SmiMI	CAYNNNNRTG	2 cut(s)	456, 1136
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	6 cut(s)	312, 483, 572, 744, 864, 1056
SsiI	CCGC	7 cut(s)	53, 56, 82, 87, 825, 872, 971
SspMI	CTAG	2 cut(s)	606, 741
SstI	GAGCTC	1 cut(s)	1015
StyD4I	CCNGG	2 cut(s)	301, 567
StyI	CCWWGG	2 cut(s)	22, 791
TaaI	ACNGT	3 cut(s)	838, 1063, 1150
TaiI	ACGT	3 cut(s)	456, 772, 1182
TaqI	TCGA	4 cut(s)	45, 189, 292, 1152
TasI	AATT	6 cut(s)	312, 483, 572, 744, 864, 1056
TauI	GCSGC	3 cut(s)	56, 59, 89
TfiI	GAWTC	5 cut(s)	230, 663, 694, 991, 1045
Tru1I	TTAA	3 cut(s)	384, 863, 885
Tru9I	TTAA	3 cut(s)	384, 863, 885
TscAI	CASTG	2 cut(s)	841, 1002
TseI	GCWGC	3 cut(s)	64, 598, 869
TspDTI	ATGAA	3 cut(s)	324, 474, 686
TspRI	CASTG	2 cut(s)	841, 1002
XapI	RAATTY	3 cut(s)	312, 572, 744
XbaI	TCTAGA	1 cut(s)	740
XceI	RCATGY	2 cut(s)	605, 686
XspI	CTAG	2 cut(s)	606, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.