Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019012.1

Orthogroup ID

OG0009326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1270 .. 4915

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019012.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgctttttcaggtgggaggccaagggactcgtcccaccttcttcgagatggccgccgctcagcagcttccggccagcctccgcgccgccctcacttactccgtcggcgtgttggctttgcggaggccatttctgcacagggttctggactatgaagacgagttctttgcgttcctcatgctgattctcgaaactcatagcttgcgaaccacagatgcttcgttttcggaatctctgtatggattgaggaggagggctgtgaagataaaggtgcagaaggacgattctcgggtgaacttaggtgatgaatttcatcattctgggttggaaaggagacagaaagttctctcagtagtgtttttggttgtattgccctacttcaaatcgaaattgcacgcaatctataatagggaaagggaagcaagactacaagcaactttatggggagatagtggtgagagatttgacgacgctgacataattgataggggcgagggttctgttgtttcaagaagtttggatgtggaagcatcagtgaggacacgtttggcaaagaggatccagaaattgataggtgcttgctacccatggctgcatgctagtagtgaaggattttcatttgcttaccagatgttatacttgttggatgcgacgggattttattctttaggattacatgcgcttgggattcaagtttgtcgagctactgggcaagagctgatggatacttcttctagaatttcaaaaacaagaagccgtgaacgtgagagacttcgtggtcctccatggttgaaggcaatacaaggagcattgctcagtggtacatacacggtcctggattatgcgcagactggtttaattgcagcagtattctttttcaaaatgatggaatggtggtaccaatctgctgaagagagaatgtcagctccaaccatataccccccacctccaccgcctccttctccccaggttgccaaagaggggattccactgccttccaatagaactctttgtcctctctgttcacagaaacgcgcaaatccatctgtaattacagtttctgggtttgttttttgctatgcctgcgttttcaagtatgtttctcagtataagcgctgtccagtcacattgctgcctgctaatgtcgaccagataagaaggctctttcatgatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4_2

Protein Analysis

392

Amino Acids

44.38

Weight (kDa)

9.38

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04460
fragaria_vesca	FvH4_6g01740
malus_domestica	MD00G1148800.v1.1 MD04G1231200.v1.1
prunus_persica	Prupe.6G350900_v2.0.a1
pyrus_communis	pycom04g20480 pycom12g22930
rosa_chinensis	RchiOBHm_Chr3g0449481
rosa_laevigata	RLG00000025823 RLG00000025826
rosa_multiflora	Rmu_sc0000430.1_g000019 Rmu_sc0019012.1_g000002 Rmu_sc0039372.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427440
rosa_rugosa	Rorug02G0621500
rosa_samantha	Rh3AG019300 Rh3AG019700 Rh3BG019700 Rh3CG018400 Rh3DG019700
rosa_wichuraiana	Rw3G001530 Rw3G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	777
Acc16I	TGCGCA	1 cut(s)	846
Acc65I	GGTACC	1 cut(s)	897
AccB1I	GGYRCC	1 cut(s)	897
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	1146
AccII	CGCG	2 cut(s)	84, 1035
AciI	CCGC	6 cut(s)	54, 57, 82, 87, 121, 953
AclWI	GGATC	2 cut(s)	553, 566
AcoI	YGGCCR	2 cut(s)	51, 72
AcsI	RAATTY	2 cut(s)	308, 738
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	2 cut(s)	823, 899
AfeI	AGCGCT	1 cut(s)	1115
AfiI	CCNNNNNNNGG	1 cut(s)	981
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	7 cut(s)	382, 510, 692, 744, 793, 880, 1093
AjnI	CCWGG	2 cut(s)	834, 966
AloI	GAACNNNNNNTCC	2 cut(s)	997, 1029
AluBI	AGCT	5 cut(s)	67, 201, 704, 718, 926
AluI	AGCT	5 cut(s)	67, 201, 704, 718, 926
Alw26I	GTCTC	2 cut(s)	328, 763
AlwI	GGATC	2 cut(s)	553, 566
AlwNI	CAGNNNCTG	1 cut(s)	1061
Ama87I	CYCGRG	1 cut(s)	288
Aor51HI	AGCGCT	1 cut(s)	1115
AoxI	GGCC	4 cut(s)	19, 51, 72, 125
ApeKI	GCWGC	4 cut(s)	64, 592, 863, 1132
ApoI	RAATTY	2 cut(s)	308, 738
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp718I	GGTACC	1 cut(s)	897
AspLEI	GCGC	5 cut(s)	86, 682, 847, 1037, 1116
AspS9I	GGNCC	2 cut(s)	779, 832
AsuHPI	GGTGA	3 cut(s)	304, 314, 467
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	2 cut(s)	779, 832
BamHI	GGATCC	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	897
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	76, 579, 875, 1119
BccI	CCATC	4 cut(s)	43, 715, 880, 1051
BceAI	ACGGC	1 cut(s)	741
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	2 cut(s)	836, 968
BciVI	GTATCC	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	328, 763
BfaI	CTAG	2 cut(s)	600, 735
BfoI	RGCGCY	1 cut(s)	1117
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	7 cut(s)	54, 57, 65, 87, 593, 864, 1133
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	7 cut(s)	55, 58, 66, 88, 594, 865, 1134
Bme1390I	CCNGG	2 cut(s)	836, 968
Bme18I	GGWCC	2 cut(s)	779, 832
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	779, 832
BmiI	GGNNCC	2 cut(s)	560, 899
BmrFI	CCNGG	2 cut(s)	836, 968
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	3 cut(s)	205, 539, 637
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	798, 830
Bpu1102I	GCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	22, 587, 785, 966
Bsc4I	CCNNNNNNNGG	1 cut(s)	981
Bse1I	ACTGG	3 cut(s)	712, 856, 1121
Bse3DI	GCAATG	2 cut(s)	809, 1127
BseBI	CCWGG	2 cut(s)	836, 968
BseDI	CCNNGG	4 cut(s)	22, 587, 785, 966
BseGI	GGATG	2 cut(s)	526, 652
BseLI	CCNNNNNNNGG	1 cut(s)	981
BseMI	GCAATG	2 cut(s)	809, 1127
BseMII	CTCAG	4 cut(s)	74, 363, 829, 1118
BseNI	ACTGG	3 cut(s)	712, 856, 1121
BseRI	GAGGAG	2 cut(s)	262, 265
BseXI	GCAGC	4 cut(s)	76, 579, 875, 1119
BsgI	GTGCAG	2 cut(s)	119, 293
Bsh1236I	CGCG	2 cut(s)	84, 1035
BshFI	GGCC	4 cut(s)	21, 53, 74, 127
BshNI	GGYRCC	1 cut(s)	897
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	18, 40
BslI	CCNNNNNNNGG	1 cut(s)	981
BsmAI	GTCTC	2 cut(s)	328, 763
BsmFI	GGGAC	2 cut(s)	18, 40
BsnI	GGCC	4 cut(s)	21, 53, 74, 127
BsoBI	CYCGRG	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	558
Bsp1720I	GCTNAGC	1 cut(s)	60
Bsp19I	CCATGG	2 cut(s)	587, 785
BspACI	CCGC	6 cut(s)	54, 57, 82, 87, 121, 953
BspANI	GGCC	4 cut(s)	21, 53, 74, 127
BspCNI	CTCAG	4 cut(s)	73, 362, 828, 1117
BspFNI	CGCG	2 cut(s)	84, 1035
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	2 cut(s)	560, 899
BspPI	GGATC	2 cut(s)	553, 566
BspT107I	GGYRCC	1 cut(s)	897
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	809, 1127
BsrI	ACTGG	3 cut(s)	712, 856, 1121
BssECI	CCNNGG	4 cut(s)	22, 587, 785, 966
BssMI	GATC	1 cut(s)	558
BssT1I	CCWWGG	3 cut(s)	22, 587, 785
Bst2UI	CCWGG	2 cut(s)	836, 968
Bst4CI	ACNGT	2 cut(s)	832, 1057
Bst6I	CTCTTC	1 cut(s)	906
BstC8I	GCNNGC	7 cut(s)	76, 203, 396, 580, 597, 1084, 1137
BstDEI	CTNAG	5 cut(s)	60, 298, 349, 815, 1104
BstDSI	CCRYGG	2 cut(s)	587, 785
BstF5I	GGATG	2 cut(s)	526, 652
BstFNI	CGCG	2 cut(s)	84, 1035
BstH2I	RGCGCY	1 cut(s)	1117
BstHHI	GCGC	5 cut(s)	86, 682, 847, 1037, 1116
BstKTI	GATC	1 cut(s)	561
BstMAI	GTCTC	2 cut(s)	328, 763
BstMBI	GATC	1 cut(s)	558
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 1083
BstNI	CCWGG	2 cut(s)	836, 968
BstNSI	RCATGY	2 cut(s)	599, 680
BstSCI	CCNGG	2 cut(s)	834, 966
BstUI	CGCG	2 cut(s)	84, 1035
BstV1I	GCAGC	4 cut(s)	76, 579, 875, 1119
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	4 cut(s)	21, 53, 74, 127
BtgI	CCRYGG	2 cut(s)	587, 785
BtsCI	GGATG	2 cut(s)	526, 652
BtsI	GCAGTG	1 cut(s)	989
BtsIMutI	CAGTG	3 cut(s)	540, 823, 989
Cac8I	GCNNGC	7 cut(s)	76, 203, 396, 580, 597, 1084, 1137
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	5 cut(s)	86, 682, 847, 1037, 1116
Cfr13I	GGNCC	2 cut(s)	779, 832
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	822, 898
CviAII	CATG	6 cut(s)	178, 588, 596, 677, 786, 1169
CviQI	GTAC	2 cut(s)	822, 898
DdeI	CTNAG	5 cut(s)	60, 298, 349, 815, 1104
DpnI	GATC	1 cut(s)	560
DpnII	GATC	1 cut(s)	558
DrdI	GACNNNNNNGTC	1 cut(s)	777
DseDI	GACNNNNNNGTC	1 cut(s)	777
EaeI	YGGCCR	2 cut(s)	51, 72
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Eco130I	CCWWGG	3 cut(s)	22, 587, 785
Eco47I	GGWCC	2 cut(s)	779, 832
Eco47III	AGCGCT	1 cut(s)	1115
Eco57I	CTGAAG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	834, 966
EcoT14I	CCWWGG	3 cut(s)	22, 587, 785
ErhI	CCWWGG	3 cut(s)	22, 587, 785
FaeI	CATG	6 cut(s)	181, 591, 599, 680, 789, 1172
FaqI	GGGAC	2 cut(s)	18, 40
FatI	CATG	6 cut(s)	177, 587, 595, 676, 785, 1168
FblI	GTMKAC	1 cut(s)	1146
Fnu4HI	GCNGC	7 cut(s)	54, 57, 65, 87, 593, 864, 1133
FokI	GGATG	2 cut(s)	533, 659
Fsp4HI	GCNGC	7 cut(s)	54, 57, 65, 87, 593, 864, 1133
FspBI	CTAG	2 cut(s)	600, 735
FspI	TGCGCA	1 cut(s)	846
GlaI	GCGC	5 cut(s)	85, 681, 846, 1036, 1115
GluI	GCNGC	7 cut(s)	54, 57, 65, 87, 593, 864, 1133
HaeII	RGCGCY	1 cut(s)	1117
HaeIII	GGCC	4 cut(s)	21, 53, 74, 127
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	5 cut(s)	86, 682, 847, 1037, 1116
Hin1II	CATG	6 cut(s)	181, 591, 599, 680, 789, 1172
Hin6I	GCGC	5 cut(s)	84, 680, 845, 1035, 1114
HinP1I	GCGC	5 cut(s)	84, 680, 845, 1035, 1114
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HinfI	GANTC	6 cut(s)	28, 184, 230, 284, 688, 985
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	304, 314, 467
Hpy166II	GTNNAC	4 cut(s)	295, 761, 1025, 1147
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	7 cut(s)	46, 146, 188, 510, 562, 735, 1169
Hpy8I	GTNNAC	4 cut(s)	295, 761, 1025, 1147
Hpy99I	CGWCG	3 cut(s)	107, 473, 655
HpyAV	CCTTC	7 cut(s)	49, 271, 602, 787, 969, 1005, 1152
HpyCH4III	ACNGT	2 cut(s)	832, 1057
HpyCH4IV	ACGT	2 cut(s)	544, 763
HpyCH4V	TGCA	5 cut(s)	136, 274, 394, 595, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 1083
HpyF3I	CTNAG	5 cut(s)	60, 298, 349, 815, 1104
HpySE526I	ACGT	2 cut(s)	544, 763
Hsp92II	CATG	6 cut(s)	181, 591, 599, 680, 789, 1172
HspAI	GCGC	5 cut(s)	84, 680, 845, 1035, 1114
KpnI	GGTACC	1 cut(s)	901
Kzo9I	GATC	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	806, 931
Lsp1109I	GCAGC	4 cut(s)	76, 579, 875, 1119
LweI	GCATC	3 cut(s)	205, 539, 637
MaeI	CTAG	2 cut(s)	600, 735
MaeII	ACGT	2 cut(s)	544, 763
MaeIII	GTNAC	1 cut(s)	1123
MalI	GATC	1 cut(s)	560
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	558
MboII	GAAGA	5 cut(s)	34, 167, 274, 723, 923
MflI	RGATCY	1 cut(s)	558
MluCI	AATT	7 cut(s)	308, 389, 480, 566, 738, 858, 1050
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	3 cut(s)	306, 624, 953
MseI	TTAA	1 cut(s)	857
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	836, 968
MvaI	CCWGG	2 cut(s)	836, 968
MvnI	CGCG	2 cut(s)	84, 1035
MwoI	GCNNNNNNNGC	2 cut(s)	133, 1083
NcoI	CCATGG	2 cut(s)	587, 785
NdeII	GATC	1 cut(s)	558
NlaIII	CATG	6 cut(s)	181, 591, 599, 680, 789, 1172
NlaIV	GGNNCC	2 cut(s)	560, 899
NmuCI	GTSAC	1 cut(s)	1123
NsbI	TGCGCA	1 cut(s)	846
NspI	RCATGY	2 cut(s)	599, 680
PaeI	GCATGC	1 cut(s)	599
PagI	TCATGA	1 cut(s)	1168
PfeI	GAWTC	5 cut(s)	184, 230, 284, 688, 985
PfoI	TCCNGGA	1 cut(s)	834
PkrI	GCNGC	7 cut(s)	55, 58, 66, 88, 594, 865, 1134
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	834, 966
PspGI	CCWGG	2 cut(s)	834, 966
PspN4I	GGNNCC	2 cut(s)	560, 899
PspPI	GGNCC	2 cut(s)	779, 832
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	1 cut(s)	558
RsaI	GTAC	2 cut(s)	823, 899
RsaNI	GTAC	2 cut(s)	822, 898
SalI	GTCGAC	1 cut(s)	1145
SaqAI	TTAA	1 cut(s)	857
SatI	GCNGC	7 cut(s)	54, 57, 65, 87, 593, 864, 1133
Sau3AI	GATC	1 cut(s)	558
Sau96I	GGNCC	2 cut(s)	779, 832
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	836, 968
SfaNI	GCATC	3 cut(s)	205, 539, 637
SinI	GGWCC	2 cut(s)	779, 832
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	7 cut(s)	308, 389, 480, 566, 738, 858, 1050
SsiI	CCGC	6 cut(s)	54, 57, 82, 87, 121, 953
SspMI	CTAG	2 cut(s)	600, 735
StyD4I	CCNGG	2 cut(s)	834, 966
StyI	CCWWGG	3 cut(s)	22, 587, 785
TaaI	ACNGT	2 cut(s)	832, 1057
TaiI	ACGT	2 cut(s)	547, 766
TaqI	TCGA	5 cut(s)	45, 189, 386, 700, 1146
TasI	AATT	7 cut(s)	308, 389, 480, 566, 738, 858, 1050
TauI	GCSGC	3 cut(s)	56, 59, 89
TfiI	GAWTC	5 cut(s)	184, 230, 284, 688, 985
Tru1I	TTAA	1 cut(s)	857
Tru9I	TTAA	1 cut(s)	857
TscAI	CASTG	3 cut(s)	540, 823, 996
TseFI	GTSAC	1 cut(s)	1123
TseI	GCWGC	4 cut(s)	64, 592, 863, 1132
Tsp45I	GTSAC	1 cut(s)	1123
TspDTI	ATGAA	5 cut(s)	168, 302, 321, 606, 1157
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	3 cut(s)	540, 823, 996
VpaK11BI	GGWCC	2 cut(s)	779, 832
XapI	RAATTY	2 cut(s)	308, 738
XbaI	TCTAGA	1 cut(s)	734
XceI	RCATGY	2 cut(s)	599, 680
XmiI	GTMKAC	1 cut(s)	1146
XspI	CTAG	2 cut(s)	600, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.