Rh3DG019700

Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009326
Physical Location & Seq
Forward (+)
1238353 .. 1258530
20178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG019700.1

Sequence Viewer

Length: 1179 bp
ATGCTTTTTCAGGTGGAAGGCCAAGGGACTCGTCCCACCTTCTTCGAGATGGCCGCCGCTCAGCAGCTTCCGGCCAGCCTCCGCGCCGCCCTCACTTACTCCGTCGGCGTGTTGGCTTTGCGGAGACCATTTCTGCATAGGGTTCTGGACTATGAAGACGAGTTCTTTGCGTTCCTCATGCTGATTCTCGAAACTCATAGCTTGCGAACCACAGATGCTTCGTTTTCGGAATCTCTGTATGGATTGAGGAGGAGGGCTGTGAAGATAAAGGTGCAGAAGGACGATTCTCGGGTGAACTTAGGTGATGAATTTCATCATTCTGGGTTGGAAAGGAGACAGAAAGTTCTCTCAGTAGTGTTTTTGGTTGTATTGCCCTACTTCAAATCGAAATTGCACGCAATCTATAATAGGGAAAGGGAAGCGAGACTACAAGCAACTTTATGGGGAGATAGTGGTGAGAGATTTGATGACGCTGACATAATTGATAGGGGCGAGGGTTCTGTTGTTTCAAGAAGTTTGGATGTGGAAGCATCAGTTAGGACTCGTTTGGCAAAGAAGATCCAGAAATTGATAGGTGCTTGCTACCCATGGCTGCATGCTAGTAGTGAAGGATTTTCATTTGCTTACCAGATGTTATACTTGTTGGATGCGACGGGATTTTATTCTTTAGGATTACATGCGCTTGGGATTCAAGTTTGTCGAGCTACTGGGCAAGAGCTGATGGATACTTCTTCTAGAATTTCAAAAACAAGAAGCCGTGAACGTGAGAGACTTCGTGGTCCTCCATGGTTGAAGGCAATACAAGGAGCATTGCTCAGTGGTACATACACAGTCCTGGATTATGCGCAGACTGGTTTAATTGCAGCAGTATTCTTTTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAAGAGAGAATGTCAGCTCCAACCATATACCCCCCACCTCCACCGCCTCCTTCCCCCCAGGTTGCCAAAGAGGGGATTCCACTGCCTTCCGATAGAACTCTTTGTCCTCTCTGTTCACAGAAACGCGCGAATCCATCTGTAATTACAGTTTCTGGGTTTGTCTTTTGCTATGCCTGCGTTTTCAAGTATGTTTCTCAGTATAAGCGCTGTCCAGTCACATTGATGCCTGCTAACGTTGACCAGATAAGAAGGCTCTTTCATGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_2

Protein Analysis

392

Amino Acids

44.44

Weight (kDa)

9.22

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 21 - 302 3.8e-42 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 777
Acc16I TGCGCA 1 cut(s) 846
Acc65I GGTACC 1 cut(s) 897
AccB1I GGYRCC 1 cut(s) 897
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 3 cut(s) 84, 1035, 1037
AciI CCGC 6 cut(s) 54, 57, 82, 87, 121, 953
AclI AACGTT 1 cut(s) 1143
AclWI GGATC 1 cut(s) 553
AcoI YGGCCR 2 cut(s) 51, 72
AcsI RAATTY 2 cut(s) 308, 738
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 2 cut(s) 823, 899
AfeI AGCGCT 1 cut(s) 1115
AfiI CCNNNNNNNGG 1 cut(s) 981
AgsI TTSAA 6 cut(s) 382, 510, 692, 744, 793, 1093
AjnI CCWGG 2 cut(s) 834, 966
AloI GAACNNNNNNTCC 2 cut(s) 997, 1029
AluBI AGCT 5 cut(s) 67, 201, 704, 718, 926
AluI AGCT 5 cut(s) 67, 201, 704, 718, 926
Alw26I GTCTC 4 cut(s) 118, 328, 418, 763
AlwI GGATC 1 cut(s) 553
AlwNI CAGNNNCTG 1 cut(s) 1061
Ama87I CYCGRG 1 cut(s) 288
Aor51HI AGCGCT 1 cut(s) 1115
AoxI GGCC 3 cut(s) 19, 51, 72
ApeKI GCWGC 3 cut(s) 64, 592, 863
ApoI RAATTY 2 cut(s) 308, 738
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp718I GGTACC 1 cut(s) 897
AspLEI GCGC 5 cut(s) 86, 682, 847, 1037, 1116
AspS9I GGNCC 1 cut(s) 779
AsuHPI GGTGA 3 cut(s) 304, 314, 467
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 1 cut(s) 779
BanI GGYRCC 1 cut(s) 897
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 76, 579, 875
BccI CCATC 4 cut(s) 43, 715, 880, 1051
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 2 cut(s) 836, 968
BciVI GTATCC 1 cut(s) 718
BcoDI GTCTC 4 cut(s) 118, 328, 418, 763
BfaI CTAG 2 cut(s) 600, 735
BfoI RGCGCY 1 cut(s) 1117
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 6 cut(s) 55, 58, 66, 88, 594, 865
Bme1390I CCNGG 2 cut(s) 836, 968
Bme18I GGWCC 1 cut(s) 779
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 779
BmiI GGNNCC 1 cut(s) 899
BmrFI CCNGG 2 cut(s) 836, 968
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 4 cut(s) 205, 539, 637, 1122
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 798, 830
Bpu1102I GCTNAGC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 22, 587, 785, 966
Bsc4I CCNNNNNNNGG 1 cut(s) 981
Bse1I ACTGG 3 cut(s) 712, 856, 1121
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 2 cut(s) 836, 968
BseDI CCNNGG 4 cut(s) 22, 587, 785, 966
BseGI GGATG 2 cut(s) 526, 652
BseLI CCNNNNNNNGG 1 cut(s) 981
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 4 cut(s) 74, 363, 829, 1118
BseNI ACTGG 3 cut(s) 712, 856, 1121
BseRI GAGGAG 2 cut(s) 262, 265
BseXI GCAGC 3 cut(s) 76, 579, 875
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 3 cut(s) 84, 1035, 1037
BshFI GGCC 3 cut(s) 21, 53, 74
BshNI GGYRCC 1 cut(s) 897
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 18, 40
BslI CCNNNNNNNGG 1 cut(s) 981
BsmAI GTCTC 4 cut(s) 118, 328, 418, 763
BsmFI GGGAC 2 cut(s) 18, 40
BsnI GGCC 3 cut(s) 21, 53, 74
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 288
Bsp143I GATC 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 60
Bsp19I CCATGG 2 cut(s) 587, 785
BspACI CCGC 6 cut(s) 54, 57, 82, 87, 121, 953
BspANI GGCC 3 cut(s) 21, 53, 74
BspCNI CTCAG 4 cut(s) 73, 362, 828, 1117
BspFNI CGCG 3 cut(s) 84, 1035, 1037
BspHI TCATGA 1 cut(s) 1168
BspLI GGNNCC 1 cut(s) 899
BspPI GGATC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 897
BspTNI GGTCTC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 809
BsrI ACTGG 3 cut(s) 712, 856, 1121
BssECI CCNNGG 4 cut(s) 22, 587, 785, 966
BssMI GATC 1 cut(s) 558
BssT1I CCWWGG 3 cut(s) 22, 587, 785
Bst2UI CCWGG 2 cut(s) 836, 968
Bst4CI ACNGT 2 cut(s) 832, 1057
Bst6I CTCTTC 1 cut(s) 906
BstC8I GCNNGC 7 cut(s) 76, 203, 396, 580, 597, 1084, 1137
BstDEI CTNAG 5 cut(s) 60, 298, 349, 815, 1104
BstDSI CCRYGG 2 cut(s) 587, 785
BstF5I GGATG 2 cut(s) 526, 652
BstFNI CGCG 3 cut(s) 84, 1035, 1037
BstH2I RGCGCY 1 cut(s) 1117
BstHHI GCGC 5 cut(s) 86, 682, 847, 1037, 1116
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 4 cut(s) 118, 328, 418, 763
BstMBI GATC 1 cut(s) 558
BstMWI GCNNNNNNNGC 1 cut(s) 1083
BstNI CCWGG 2 cut(s) 836, 968
BstNSI RCATGY 2 cut(s) 599, 680
BstSCI CCNGG 2 cut(s) 834, 966
BstUI CGCG 3 cut(s) 84, 1035, 1037
BstV1I GCAGC 3 cut(s) 76, 579, 875
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 3 cut(s) 21, 53, 74
BtgI CCRYGG 2 cut(s) 587, 785
BtsCI GGATG 2 cut(s) 526, 652
BtsI GCAGTG 1 cut(s) 989
BtsIMutI CAGTG 2 cut(s) 823, 989
Cac8I GCNNGC 7 cut(s) 76, 203, 396, 580, 597, 1084, 1137
CaiI CAGNNNCTG 1 cut(s) 1061
CciI TCATGA 1 cut(s) 1168
CfoI GCGC 5 cut(s) 86, 682, 847, 1037, 1116
Cfr13I GGNCC 1 cut(s) 779
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 822, 898
CviAII CATG 6 cut(s) 178, 588, 596, 677, 786, 1169
CviQI GTAC 2 cut(s) 822, 898
DdeI CTNAG 5 cut(s) 60, 298, 349, 815, 1104
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
DraI TTTAAA 1 cut(s) 880
DrdI GACNNNNNNGTC 1 cut(s) 777
DseDI GACNNNNNNGTC 1 cut(s) 777
EaeI YGGCCR 2 cut(s) 51, 72
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Eco130I CCWWGG 3 cut(s) 22, 587, 785
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 779
Eco47III AGCGCT 1 cut(s) 1115
Eco57I CTGAAG 1 cut(s) 930
Eco88I CYCGRG 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 834, 966
EcoT14I CCWWGG 3 cut(s) 22, 587, 785
ErhI CCWWGG 3 cut(s) 22, 587, 785
FaeI CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
FaqI GGGAC 2 cut(s) 18, 40
FatI CATG 6 cut(s) 177, 587, 595, 676, 785, 1168
Fnu4HI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
FokI GGATG 2 cut(s) 533, 659
Fsp4HI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
FspBI CTAG 2 cut(s) 600, 735
FspI TGCGCA 1 cut(s) 846
GlaI GCGC 5 cut(s) 85, 681, 846, 1036, 1115
GluI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
HaeII RGCGCY 1 cut(s) 1117
HaeIII GGCC 3 cut(s) 21, 53, 74
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 479
HhaI GCGC 5 cut(s) 86, 682, 847, 1037, 1116
Hin1II CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
Hin6I GCGC 5 cut(s) 84, 680, 845, 1035, 1114
HinP1I GCGC 5 cut(s) 84, 680, 845, 1035, 1114
HincII GTYRAC 1 cut(s) 1147
HindII GTYRAC 1 cut(s) 1147
HinfI GANTC 8 cut(s) 28, 184, 230, 284, 541, 688, 985, 1039
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 304, 314, 467
Hpy166II GTNNAC 4 cut(s) 295, 761, 1025, 1147
Hpy188I TCNGA 2 cut(s) 229, 1000
Hpy188III TCNNGA 7 cut(s) 46, 146, 188, 510, 562, 735, 1169
Hpy8I GTNNAC 4 cut(s) 295, 761, 1025, 1147
Hpy99I CGWCG 2 cut(s) 107, 655
HpyAV CCTTC 8 cut(s) 11, 49, 271, 602, 787, 969, 1005, 1152
HpyCH4III ACNGT 2 cut(s) 832, 1057
HpyCH4IV ACGT 2 cut(s) 763, 1143
HpyCH4V TGCA 5 cut(s) 136, 274, 394, 595, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 1083
HpyF3I CTNAG 5 cut(s) 60, 298, 349, 815, 1104
HpySE526I ACGT 2 cut(s) 763, 1143
Hsp92II CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
HspAI GCGC 5 cut(s) 84, 680, 845, 1035, 1114
KpnI GGTACC 1 cut(s) 901
Kzo9I GATC 1 cut(s) 558
LmnI GCTCC 2 cut(s) 806, 931
Lsp1109I GCAGC 3 cut(s) 76, 579, 875
LweI GCATC 4 cut(s) 205, 539, 637, 1122
MaeI CTAG 2 cut(s) 600, 735
MaeII ACGT 2 cut(s) 763, 1143
MaeIII GTNAC 1 cut(s) 1123
MalI GATC 1 cut(s) 560
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 558
MboII GAAGA 6 cut(s) 34, 167, 274, 568, 723, 923
MflI RGATCY 1 cut(s) 558
MluCI AATT 7 cut(s) 308, 389, 480, 566, 738, 858, 1050
MlyI GAGTC 2 cut(s) 22, 535
MmeI TCCRAC 3 cut(s) 306, 624, 953
MseI TTAA 2 cut(s) 857, 879
MslI CAYNNNNRTG 1 cut(s) 1130
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 836, 968
MvaI CCWGG 2 cut(s) 836, 968
MvnI CGCG 3 cut(s) 84, 1035, 1037
MwoI GCNNNNNNNGC 1 cut(s) 1083
NcoI CCATGG 2 cut(s) 587, 785
NdeII GATC 1 cut(s) 558
NlaIII CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
NlaIV GGNNCC 1 cut(s) 899
NmuCI GTSAC 1 cut(s) 1123
NsbI TGCGCA 1 cut(s) 846
NspI RCATGY 2 cut(s) 599, 680
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 1168
PfeI GAWTC 6 cut(s) 184, 230, 284, 688, 985, 1039
PfoI TCCNGGA 1 cut(s) 834
PkrI GCNGC 6 cut(s) 55, 58, 66, 88, 594, 865
PleI GAGTC 2 cut(s) 22, 535
PpsI GAGTC 2 cut(s) 22, 535
Psp1406I AACGTT 1 cut(s) 1143
Psp6I CCWGG 2 cut(s) 834, 966
PspGI CCWGG 2 cut(s) 834, 966
PspN4I GGNNCC 1 cut(s) 899
PspPI GGNCC 1 cut(s) 779
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 558
RsaI GTAC 2 cut(s) 823, 899
RsaNI GTAC 2 cut(s) 822, 898
RseI CAYNNNNRTG 1 cut(s) 1130
SaqAI TTAA 2 cut(s) 857, 879
SatI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
Sau3AI GATC 1 cut(s) 558
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 2 cut(s) 22, 535
ScrFI CCNGG 2 cut(s) 836, 968
SfaNI GCATC 4 cut(s) 205, 539, 637, 1122
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 1130
SphI GCATGC 1 cut(s) 599
Sse9I AATT 7 cut(s) 308, 389, 480, 566, 738, 858, 1050
SsiI CCGC 6 cut(s) 54, 57, 82, 87, 121, 953
SspMI CTAG 2 cut(s) 600, 735
StyD4I CCNGG 2 cut(s) 834, 966
StyI CCWWGG 3 cut(s) 22, 587, 785
TaaI ACNGT 2 cut(s) 832, 1057
TaiI ACGT 2 cut(s) 766, 1146
TaqI TCGA 4 cut(s) 45, 189, 386, 700
TasI AATT 7 cut(s) 308, 389, 480, 566, 738, 858, 1050
TauI GCSGC 3 cut(s) 56, 59, 89
TfiI GAWTC 6 cut(s) 184, 230, 284, 688, 985, 1039
Tru1I TTAA 2 cut(s) 857, 879
Tru9I TTAA 2 cut(s) 857, 879
TscAI CASTG 2 cut(s) 823, 996
TseFI GTSAC 1 cut(s) 1123
TseI GCWGC 3 cut(s) 64, 592, 863
Tsp45I GTSAC 1 cut(s) 1123
TspDTI ATGAA 5 cut(s) 168, 302, 321, 606, 1157
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 2 cut(s) 823, 996
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 2 cut(s) 308, 738
XbaI TCTAGA 1 cut(s) 734
XceI RCATGY 2 cut(s) 599, 680
XspI CTAG 2 cut(s) 600, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.