Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009326

Physical Location & Seq

Genomic Coordinates Reverse (-)

48517698 .. 48520366

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAATCTCTGCAGCAATCTCCAAGGTCATCTCACGAACATTGCACATCACTACAGTCAATGATTGTTAAGTACAAGATATCCTCATCATCTGGAAGGAAACCTATAACAGTGAACTCTTCATTGCGCTCTCTGCGTATAGTGATTAAACGACTTATCCCCAAGCATAGTGAGCTGATGGATACTTCTTCTAGAATTTCAAAAACAAGAAGCCGTGAACGTGAGAGACTTCGTGGTCCTCCATGGTTGAAGAATATGTTTATAAAATATGGTTCTCATTGTCAGAGCGTCTTTTCCCCCGTTTTCCTGGAGTGGAAAGTTTTTTTTTTTTTTTTTTTTTTTTTGATGATGGAATGGTGGTACCAATCTGCTGAAGAGAGAATGTCAGCTCCCACCTCCACCGCCTCCTTCTCCCCAGGTGAAGTTGCCCAAGAGGGGATTATTCCACTGCCTTCCGATAGAAATCTTTGTCCTCTTTGTTCACAGAAACACGCGAATCCATCTGTAATTACAGTTTCTGGGTTTGTCTTTTGCTATGCCTGCGTTTTCAAGTATGTTTCTCAGTATAAGCGGTGTCCAGTCACATTGATGCCTGCTAATGTCGACCAGATAAGAAGGCTCTTTCATGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4_2

Protein Analysis

212

Amino Acids

24.44

Weight (kDa)

9.71

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04460
fragaria_vesca	FvH4_6g01740
malus_domestica	MD00G1148800.v1.1 MD04G1231200.v1.1
prunus_persica	Prupe.6G350900_v2.0.a1
pyrus_communis	pycom04g20480 pycom12g22930
rosa_chinensis	RchiOBHm_Chr3g0449481
rosa_laevigata	RLG00000025823 RLG00000025826
rosa_multiflora	Rmu_sc0000430.1_g000019 Rmu_sc0019012.1_g000002 Rmu_sc0039372.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427440
rosa_rugosa	Rorug02G0621500
rosa_samantha	Rh3AG019300 Rh3AG019700 Rh3BG019700 Rh3CG018400 Rh3DG019700
rosa_wichuraiana	Rw3G001530 Rw3G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AasI	GACNNNNNNGTC	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	1 cut(s)	494
AciI	CCGC	2 cut(s)	402, 571
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	74, 362
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	201, 250, 550
AjnI	CCWGG	2 cut(s)	306, 415
AluBI	AGCT	2 cut(s)	175, 389
AluI	AGCT	2 cut(s)	175, 389
Alw26I	GTCTC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	195
Asp718I	GGTACC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	172, 343, 508
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	308, 417
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	2 cut(s)	11, 53
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	308, 417
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	2 cut(s)	308, 417
BmsI	GCATC	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	23, 242, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	2 cut(s)	40, 122
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	308, 417
BseDI	CCNNGG	3 cut(s)	23, 242, 415
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	2 cut(s)	40, 122
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	402, 571
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	40, 122
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	3 cut(s)	23, 242, 415
BssT1I	CCWWGG	2 cut(s)	23, 242
Bst2UI	CCWGG	2 cut(s)	308, 417
Bst4CI	ACNGT	3 cut(s)	57, 112, 514
Bst6I	CTCTTC	2 cut(s)	124, 369
BstC8I	GCNNGC	2 cut(s)	541, 594
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 172, 540
BstNI	CCWGG	2 cut(s)	308, 417
BstSCI	CCNGG	2 cut(s)	306, 415
BstSFI	CTRYAG	2 cut(s)	11, 53
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	117, 446
Cac8I	GCNNGC	2 cut(s)	541, 594
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	73, 361
CviAII	CATG	2 cut(s)	243, 626
CviJI	RGCY	4 cut(s)	175, 213, 389, 619
CviKI_1	RGCY	4 cut(s)	175, 213, 389, 619
CviQI	GTAC	2 cut(s)	73, 361
DdeI	CTNAG	1 cut(s)	561
DrdI	GACNNNNNNGTC	1 cut(s)	234
DseDI	GACNNNNNNGTC	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	124, 369
EarI	CTCTTC	2 cut(s)	124, 369
Eco130I	CCWWGG	2 cut(s)	23, 242
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	306, 415
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	23, 242
ErhI	CCWWGG	2 cut(s)	23, 242
FaeI	CATG	2 cut(s)	246, 629
FatI	CATG	2 cut(s)	242, 625
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	246, 629
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	5, 496
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	4 cut(s)	115, 218, 482, 604
Hpy188I	TCNGA	2 cut(s)	285, 457
Hpy188III	TCNNGA	4 cut(s)	35, 93, 192, 626
Hpy8I	GTNNAC	4 cut(s)	115, 218, 482, 604
HpyAV	CCTTC	4 cut(s)	90, 418, 462, 609
HpyCH4III	ACNGT	3 cut(s)	57, 112, 514
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	13, 45
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 172, 540
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	246, 629
HspAI	GCGC	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	579
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	580
MboII	GAAGA	4 cut(s)	111, 180, 262, 386
MluCI	AATT	2 cut(s)	195, 507
MnlI	CCTC	6 cut(s)	94, 249, 406, 415, 427, 483
MseI	TTAA	2 cut(s)	69, 147
MslI	CAYNNNNRTG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	308, 417
MvaI	CCWGG	2 cut(s)	308, 417
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	133, 172, 540
NcoI	CCATGG	1 cut(s)	242
NlaIII	CATG	2 cut(s)	246, 629
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	580
PagI	TCATGA	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	5, 496
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	306, 415
PspGI	CCWGG	2 cut(s)	306, 415
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	74, 362
RsaNI	GTAC	2 cut(s)	73, 361
RseI	CAYNNNNRTG	1 cut(s)	587
SalI	GTCGAC	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	69, 147
SatI	GCNGC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	308, 417
SetI	ASST	7 cut(s)	29, 106, 177, 223, 391, 398, 421
SfaNI	GCATC	1 cut(s)	579
SfcI	CTRYAG	2 cut(s)	11, 53
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	587
Sse9I	AATT	2 cut(s)	195, 507
SsiI	CCGC	2 cut(s)	402, 571
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	306, 415
StyI	CCWWGG	2 cut(s)	23, 242
TaaI	ACNGT	3 cut(s)	57, 112, 514
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	603
TasI	AATT	2 cut(s)	195, 507
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	5, 496
Tru1I	TTAA	2 cut(s)	69, 147
Tru9I	TTAA	2 cut(s)	69, 147
TscAI	CASTG	2 cut(s)	117, 453
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	2 cut(s)	111, 614
TspRI	CASTG	2 cut(s)	117, 453
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.