Rh3AG019300

Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009326
Physical Location & Seq
Forward (+)
1238817 .. 1240141
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG019300.1

Sequence Viewer

Length: 366 bp
ATGAAGGTGCAGAAGGACGATTCTCGGGTGAACTTAGGTGATGAATTTCATCATTCTGGGTTGGAAAGGAGACAGAAAGTTCTCTCAGTAGTGTTTTTGGTTGTATTGCCCTACTTCAAATCGAAATTGCACGCAATCTATAATAGGGAAAGGGAAGCAAGACTACAAGCAACTTTATGGGGAGATAGTGGTGAGAGATTTGACGACCCTGACATAATTGATAGGGGCGAGCGTTCTGTTGTTTCAAGAAGTTTGGATGTGGAAGCATCAGTGAGGACACGTTTGGCAAAGAAGATCCAGAAATTGATAGGTGCTTGCTACCCATGGCTGCATGCTAGTAGTGAAGATTGCAGAAGAGCCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_2

Protein Analysis

121

Amino Acids

13.98

Weight (kDa)

9.26

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 18 - 114 1.5e-08 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 2 cut(s) 118, 246
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 40, 50, 203
AvaI CYCGRG 1 cut(s) 24
BanII GRGCYC 1 cut(s) 361
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbvI GCAGC 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 24
BmsI GCATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 98
BspPI GGATC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 349
BstC8I GCNNGC 4 cut(s) 132, 230, 316, 333
BstDEI CTNAG 2 cut(s) 34, 85
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 4 cut(s) 132, 230, 316, 333
CviAII CATG 2 cut(s) 324, 332
CviJI RGCY 2 cut(s) 328, 359
CviKI_1 RGCY 2 cut(s) 328, 359
DdeI CTNAG 2 cut(s) 34, 85
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 2 cut(s) 327, 335
FaiI YATR 6 cut(s) 141, 178, 215, 325, 333, 364
FatI CATG 2 cut(s) 323, 331
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 329
Hin1II CATG 2 cut(s) 327, 335
HinfI GANTC 1 cut(s) 20
HphI GGTGA 3 cut(s) 40, 50, 203
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 246, 298
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 10, 130, 331, 351
HpyF3I CTNAG 2 cut(s) 34, 85
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 327, 335
Kzo9I GATC 1 cut(s) 294
LguI GCTCTTC 1 cut(s) 349
LpnPI CCDG 3 cut(s) 42, 222, 311
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 280
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 3 cut(s) 304, 356, 366
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 4 cut(s) 44, 125, 216, 302
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 1 cut(s) 267
NcoI CCATGG 1 cut(s) 323
NdeII GATC 1 cut(s) 294
NlaIII CATG 2 cut(s) 327, 335
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 349
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 1 cut(s) 294
SduI GDGCHC 1 cut(s) 361
SetI ASST 4 cut(s) 9, 40, 283, 313
SfaNI GCATC 1 cut(s) 275
SphI GCATGC 1 cut(s) 335
Sse9I AATT 4 cut(s) 44, 125, 216, 302
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 1 cut(s) 323
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 122
TasI AATT 4 cut(s) 44, 125, 216, 302
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 17, 38, 57
TspRI CASTG 1 cut(s) 276
XapI RAATTY 1 cut(s) 44
XceI RCATGY 1 cut(s) 335
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.