Rorug02G0621500

Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009326
Physical Location & Seq
Reverse (-)
73827379 .. 73829429
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0621500.1

Sequence Viewer

Length: 714 bp
ATGAATCCTGAGAAATCCAAGAAAACCGTTGTTTCGGTCGGACCGTTTGGATCATTGACAGAGCGAGGAAATCCCTTTGATGATGGAATACACTCAGCAGTGAAAGGTTTGGCGATAGCTTATTTGGAAGGGGAAATAATTAGCAACATCAGGTTTGAATATGACGACGACGGAATCTCAGTTTGGTCAGACAAGCATGGTGAAGGAAAGACCGTTATGGAACTCTTTTCAGGGCTCATGTTTAGAAAAGAAAGCATTATATTCAATTATCCAGACGAATTTTTAACTGCAGTTCATGGACGGTATACTGAAGACTTGTTCGGGAGCGGTGCCGTCACCTCACTTACTTTTAAGACCAACAGAAATACTTACGGACCCTTTGGTTGGACGTCTCAAAATCACAAACTGGTGAAACACTCCAGCTGTTTCTCAATTCATGTGCCTGGAAATAAGATTGTTGGCTTTCATGGCAGATCAAAGAGTAAGTGGTCGGGTGGTATTTATTCAATAGGAGCCTACGTAAAGCCTTATCATCAACAAATTGATTACCCTCAAAACCAGAAACATTACACAGTTAAAGATATTCAAGTTAGCAGAAACACGGGAAACCACAACGGAGATTTCCATCTGGGCGACACGTATAACTATTACATCGAAGAAGCACGCATCGGGTCCAAATTATCTCAATCAAGCAAAAGCTGTCAATCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_2

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

8.66

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 173 1.1e-26 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 305
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 4 cut(s) 158, 265, 507, 587
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 119, 423, 699
AluI AGCT 3 cut(s) 119, 423, 699
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 41, 374, 672
AsuHPI GGTGA 3 cut(s) 212, 328, 421
AvaII GGWCC 3 cut(s) 41, 374, 672
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 2 cut(s) 77, 633
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 3 cut(s) 41, 374, 672
BmgT120I GGNCC 3 cut(s) 41, 374, 672
BmiI GGNNCC 4 cut(s) 331, 376, 514, 673
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 675
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 403
BsaAI YACGTR 2 cut(s) 520, 639
BsaBI GATNNNNATC 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 444
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 108, 192
BseNI ACTGG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 396
BsmBI CGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 50, 473
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 107, 191
BspLI GGNNCC 4 cut(s) 331, 376, 514, 673
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 411
BssMI GATC 2 cut(s) 50, 473
BssNAI GTATAC 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 389
Bst1107I GTATAC 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 5 cut(s) 28, 45, 214, 303, 574
BstACI GRCGYC 1 cut(s) 389
BstBAI YACGTR 2 cut(s) 520, 639
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 3 cut(s) 9, 94, 178
BstKTI GATC 2 cut(s) 53, 476
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 2 cut(s) 50, 473
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 288
BstSNI TACGTA 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 318
BstZ17I GTATAC 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 664
Cfr13I GGNCC 3 cut(s) 41, 374, 672
CpoI CGGWCCG 1 cut(s) 41
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 5 cut(s) 197, 238, 296, 437, 467
CviJI RGCY 7 cut(s) 119, 235, 423, 462, 515, 526, 699
CviKI_1 RGCY 7 cut(s) 119, 235, 423, 462, 515, 526, 699
DdeI CTNAG 3 cut(s) 9, 94, 178
DpnI GATC 2 cut(s) 52, 475
DpnII GATC 2 cut(s) 50, 473
Eco105I TACGTA 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 41, 374, 672
Eco57I CTGAAG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 5 cut(s) 200, 241, 299, 440, 470
FatI CATG 5 cut(s) 196, 237, 295, 436, 466
FblI GTMKAC 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 5 cut(s) 200, 241, 299, 440, 470
HinfI GANTC 2 cut(s) 4, 174
HphI GGTGA 3 cut(s) 212, 328, 421
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 2 cut(s) 41, 190
Hpy188III TCNNGA 3 cut(s) 8, 272, 322
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 2 cut(s) 122, 197
HpyCH4III ACNGT 5 cut(s) 28, 45, 214, 303, 574
HpyCH4IV ACGT 3 cut(s) 389, 519, 638
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 3 cut(s) 9, 94, 178
HpySE526I ACGT 3 cut(s) 389, 519, 638
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 5 cut(s) 200, 241, 299, 440, 470
Kzo9I GATC 2 cut(s) 50, 473
LmnI GCTCC 2 cut(s) 324, 512
LweI GCATC 1 cut(s) 675
MaeII ACGT 3 cut(s) 389, 519, 638
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 52, 475
MbiI CCGCTC 1 cut(s) 327
MboI GATC 2 cut(s) 50, 473
MboII GAAGA 2 cut(s) 323, 668
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 6 cut(s) 138, 265, 278, 432, 540, 677
MmeI TCCRAC 2 cut(s) 19, 365
MnlI CCTC 3 cut(s) 59, 349, 561
MseI TTAA 3 cut(s) 284, 351, 576
MspA1I CMGCKG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 468
NdeII GATC 2 cut(s) 50, 473
NlaIII CATG 5 cut(s) 200, 241, 299, 440, 470
NlaIV GGNNCC 4 cut(s) 331, 376, 514, 673
NmuCI GTSAC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 2 cut(s) 4, 174
Ppu21I YACGTR 2 cut(s) 520, 639
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 4 cut(s) 331, 376, 514, 673
PspPI GGNCC 3 cut(s) 41, 374, 672
PstI CTGCAG 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 423
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SaqAI TTAA 3 cut(s) 284, 351, 576
Sau3AI GATC 2 cut(s) 50, 473
Sau96I GGNCC 3 cut(s) 41, 374, 672
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 109, 121, 155, 341, 392, 425, 522, 641, 701
SfaNI GCATC 1 cut(s) 675
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 3 cut(s) 41, 374, 672
SnaBI TACGTA 1 cut(s) 520
Sse9I AATT 6 cut(s) 138, 265, 278, 432, 540, 677
SsiI CCGC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 5 cut(s) 28, 45, 214, 303, 574
TaiI ACGT 3 cut(s) 392, 522, 641
TaqI TCGA 1 cut(s) 654
TaqII GACCGA 1 cut(s) 25
TasI AATT 6 cut(s) 138, 265, 278, 432, 540, 677
TfiI GAWTC 2 cut(s) 4, 174
Tru1I TTAA 3 cut(s) 284, 351, 576
Tru9I TTAA 3 cut(s) 284, 351, 576
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 4 cut(s) 17, 284, 425, 455
TspGWI ACGGA 3 cut(s) 186, 387, 630
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 3 cut(s) 41, 374, 672
XapI RAATTY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 305
ZraI GACGTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.