Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009326

Physical Location & Seq

Genomic Coordinates Reverse (-)

23672725 .. 23673130

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATGGAATGGTGTTACCAATCTGCTGACGAGAGAATGTCAGCTCCAACCATATACCCTCCACCTCCTCCATCTCCACCTCCACCTCCACCTCCACCTCCACCTCCGCAGGTAAAGTGCGGAGTATTGTCAGATTTAATTGTGTTCTTAGACTTTAATGAGACTTCCAGTCGATCAAAGTCTTGGTATGTTGCCAAAGAGGGGATTCCACTGCCACCTGATAGAGCTCTTTGCCCTCTCTGCCCACAAAAGCGTGCAAATCCATCGGTAATTACAGTTTCTGGGTTTGTCTTCTGCTATGCCTGCGTCTTCAAGTATGTTTCTCAGGTGAGGCCTCCAGGTGCTGTTAGCTTTATGAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4_2

Protein Analysis

122

Amino Acids

13.34

Weight (kDa)

8.58

Isoelectric Point (pI)

73.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04460
fragaria_vesca	FvH4_6g01740
malus_domestica	MD00G1148800.v1.1 MD04G1231200.v1.1
prunus_persica	Prupe.6G350900_v2.0.a1
pyrus_communis	pycom04g20480 pycom12g22930
rosa_chinensis	RchiOBHm_Chr3g0449481
rosa_laevigata	RLG00000025823 RLG00000025826
rosa_multiflora	Rmu_sc0000430.1_g000019 Rmu_sc0019012.1_g000002 Rmu_sc0039372.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427440
rosa_rugosa	Rorug02G0621500
rosa_samantha	Rh3AG019300 Rh3AG019700 Rh3BG019700 Rh3CG018400 Rh3DG019700
rosa_wichuraiana	Rw3G001530 Rw3G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AciI	CCGC	2 cut(s)	107, 120
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	313
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	3 cut(s)	44, 227, 351
AluI	AGCT	3 cut(s)	44, 227, 351
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	155
AlwNI	CAGNNNCTG	2 cut(s)	281, 344
AoxI	GGCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	283, 301
Bbv12I	GWGCWC	1 cut(s)	229
BccI	CCATC	2 cut(s)	79, 271
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	339
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	283, 301
BpmI	CTGGAG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	107, 120
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	255, 304
BstDEI	CTNAG	2 cut(s)	148, 324
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 303
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstV2I	GAAGAC	2 cut(s)	283, 301
BsuRI	GGCC	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	255, 304
CaiI	CAGNNNCTG	2 cut(s)	281, 344
CseI	GACGC	1 cut(s)	295
CviJI	RGCY	4 cut(s)	44, 227, 334, 351
CviKI_1	RGCY	4 cut(s)	44, 227, 334, 351
DdeI	CTNAG	2 cut(s)	148, 324
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
DriI	GACNNNNNGTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	229
FaiI	YATR	6 cut(s)	53, 55, 189, 300, 318, 356
FriOI	GRGCYC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	334
HgaI	GACGC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 303
HpyF3I	CTNAG	2 cut(s)	148, 324
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	8 cut(s)	95, 181, 231, 267, 311, 316, 324, 351
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	2 cut(s)	283, 301
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	2 cut(s)	138, 270
MmeI	TCCRAC	1 cut(s)	71
MseI	TTAA	2 cut(s)	137, 156
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	240, 303
NdeII	GATC	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PstNI	CAGNNNCTG	2 cut(s)	281, 344
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	137, 156
Sau3AI	GATC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	138, 270
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	107, 120
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	138, 270
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	137, 156
Tru9I	TTAA	2 cut(s)	137, 156
TscAI	CASTG	1 cut(s)	216
TspRI	CASTG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.