Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009326

Physical Location & Seq

Genomic Coordinates Forward (+)

1297839 .. 1301069

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGAATGGTGGTACCAATCTGCTGAAGAGAGAATGTCAGCTCCAACCATATACCCCCCACCTCCACCGCCTCCTTCTCCCCAGGTTGCCAAAGAGGGGATTCCACTGCCTTCCAATAGAACTCTTTGTCCTCTCTGTTCACAGAAACGCGCGAATCCATCTGTAATTACAGTTTCTGGGTTTATCTTTTGCTATGCCTGCGTTTTCAAGTATGTTTCTCAGTATAAGCGCTGTCCAGTCACATTGATGCCTGCTAACGTCGACCAGATAAGAAGGCTCTTTCATGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex2_Pex12 zf-C3HC4_2

Protein Analysis

97

Amino Acids

11.04

Weight (kDa)

8.93

Isoelectric Point (pI)

78.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04460
fragaria_vesca	FvH4_6g01740
malus_domestica	MD00G1148800.v1.1 MD04G1231200.v1.1
prunus_persica	Prupe.6G350900_v2.0.a1
pyrus_communis	pycom04g20480 pycom12g22930
rosa_chinensis	RchiOBHm_Chr3g0449481
rosa_laevigata	RLG00000025823 RLG00000025826
rosa_multiflora	Rmu_sc0000430.1_g000019 Rmu_sc0019012.1_g000002 Rmu_sc0039372.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427440
rosa_rugosa	Rorug02G0621500
rosa_samantha	Rh3AG019300 Rh3AG019700 Rh3BG019700 Rh3CG018400 Rh3DG019700
rosa_wichuraiana	Rw3G001530 Rw3G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	2 cut(s)	150, 152
AciI	CCGC	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	81
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	230
Asp718I	GGTACC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	152, 231
BanI	GGYRCC	1 cut(s)	12
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	236
Bsh1236I	CGCG	2 cut(s)	150, 152
BshNI	GGYRCC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	150, 152
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	199, 252
BstDEI	CTNAG	1 cut(s)	219
BstFNI	CGCG	2 cut(s)	150, 152
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	152, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	150, 152
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	199, 252
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	2 cut(s)	152, 231
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	2 cut(s)	41, 277
CviKI_1	RGCY	2 cut(s)	41, 277
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco47III	AGCGCT	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	287
FaiI	YATR	6 cut(s)	50, 52, 195, 213, 225, 285
FatI	CATG	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	261
GlaI	GCGC	2 cut(s)	151, 230
HaeII	RGCGCY	1 cut(s)	232
HhaI	GCGC	2 cut(s)	152, 231
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	2 cut(s)	150, 229
HinP1I	GCGC	2 cut(s)	150, 229
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	100, 154
Hpy166II	GTNNAC	2 cut(s)	140, 262
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	140, 262
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	84, 120, 267
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	2 cut(s)	150, 229
KpnI	GGTACC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	68, 95, 162, 211, 249, 264, 278
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	72, 81, 88, 141
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	150, 152
MwoI	GCNNNNNNNGC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	100, 154
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	43, 64, 87, 261
SfaNI	GCATC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	261
TasI	AATT	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	100, 154
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.