Rmu_sc0039372.1_g000001

Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039372.1
OG0009326
Physical Location & Seq
Forward (+)
1 .. 894
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039372.1_g000001.1.cds

Sequence Viewer

Length: 503 bp
tgattctcgaaactcatagcttgcgaaccacagatgcttcgttttcggaatctctgtatggactgaggaggagggctgtgaagataaaggtgcagaaggacgattctcgggtgaacttaggtgatgaatttcatcattctgggttggaaaggagacagaaagttctctcagtagtgtttttggttgtagtgccctacttcaaatcgaaattgcacgcaatctataatagggaaagggaagcgagactacaagcaactttatggggagatagtggtgagagatttgacgacgctgacataattgataggggcgagggttctgttgtttcaagaagtttggatgtggaagcatcagtgaggacacgtttggcaaagaggatccagaaattgataggtgcttgctacccatggctgcatgctagtagtgaaggtatatgcatcttctggctggacctaatttttttttttcccttagattttcttattgcaagtacgaggatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009790 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016021 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0030258 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048598 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901575 GO:1990351 GO:1990415 GO:1990429
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_2

Protein Analysis

166

Amino Acids

19.07

Weight (kDa)

8.98

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 372, 385
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 492
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 2 cut(s) 201, 329
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 147, 237
AlwI GGATC 2 cut(s) 372, 385
Ama87I CYCGRG 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 411
ApoI RAATTY 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 3 cut(s) 123, 133, 286
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbvI GCAGC 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 147, 237
BfaI CTAG 1 cut(s) 419
BisI GCNGC 1 cut(s) 412
BlsI GCNGC 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 450
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 379
BmsI GCATC 3 cut(s) 24, 358, 446
BsaJI CCNNGG 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 55, 182
BseRI GAGGAG 2 cut(s) 81, 84
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 147, 237
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 377
Bsp19I CCATGG 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 56, 181
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 2 cut(s) 372, 385
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 406
BstC8I GCNNGC 4 cut(s) 22, 215, 399, 416
BstDEI CTNAG 4 cut(s) 64, 117, 168, 471
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 1 cut(s) 380
BstMAI GTCTC 2 cut(s) 147, 237
BstMBI GATC 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 4 cut(s) 22, 215, 399, 416
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 491
CviAII CATG 2 cut(s) 407, 415
CviJI RGCY 4 cut(s) 20, 76, 411, 447
CviKI_1 RGCY 4 cut(s) 20, 76, 411, 447
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 4 cut(s) 64, 117, 168, 471
DpnI GATC 1 cut(s) 379
DpnII GATC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 2 cut(s) 410, 418
FatI CATG 2 cut(s) 406, 414
Fnu4HI GCNGC 1 cut(s) 412
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 412
FspBI CTAG 1 cut(s) 419
GluI GCNGC 1 cut(s) 412
HgaI GACGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 410, 418
HinfI GANTC 3 cut(s) 3, 49, 103
HphI GGTGA 3 cut(s) 123, 133, 286
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 3 cut(s) 7, 329, 381
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 90, 421
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 5 cut(s) 93, 213, 414, 437, 487
HpyF3I CTNAG 4 cut(s) 64, 117, 168, 471
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 2 cut(s) 410, 418
Kzo9I GATC 1 cut(s) 377
LpnPI CCDG 4 cut(s) 125, 394, 429, 433
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 3 cut(s) 24, 358, 446
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 363
MalI GATC 1 cut(s) 379
MboI GATC 1 cut(s) 377
MboII GAAGA 2 cut(s) 93, 432
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 5 cut(s) 127, 208, 299, 385, 455
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 7 cut(s) 59, 62, 65, 306, 350, 368, 488
Mph1103I ATGCAT 1 cut(s) 439
NcoI CCATGG 1 cut(s) 406
NdeII GATC 1 cut(s) 377
NlaIII CATG 2 cut(s) 410, 418
NlaIV GGNNCC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 418
PaeI GCATGC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 3, 49, 103
PkrI GCNGC 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SatI GCNGC 1 cut(s) 412
Sau3AI GATC 1 cut(s) 377
Sau96I GGNCC 1 cut(s) 450
SduI GDGCHC 1 cut(s) 194
SetI ASST 7 cut(s) 22, 92, 123, 366, 396, 432, 455
SfaNI GCATC 3 cut(s) 24, 358, 446
SinI GGWCC 1 cut(s) 450
SphI GCATGC 1 cut(s) 418
Sse9I AATT 5 cut(s) 127, 208, 299, 385, 455
SspMI CTAG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 406
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 8, 205
TasI AATT 5 cut(s) 127, 208, 299, 385, 455
TfiI GAWTC 3 cut(s) 3, 49, 103
TscAI CASTG 1 cut(s) 359
TseI GCWGC 1 cut(s) 411
TspDTI ATGAA 2 cut(s) 121, 140
TspRI CASTG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.