Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Reverse (-)

28733160 .. 28736668

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1158100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGAGTTCCTCAGAAACCCAAAGGACAGCTAAACCCAGTCTCTCTCTAACCTTCAAATCGGAGAAACCCCATTTAAACCCAAAGCTCCGAGTTGCAGAAATCGACTCACTGAGCTCCAAAACCCCTGAGAAGCCCCAACAGTTCCGTCACAAAAGCTTATGGGAGCCGACCCAGAAGCAGCCGGCGGCTCAGATCGGATCTGCGAGACGAAAGATCGATTCTTGGTCCGAGGAAAACCCGATTGAGACACATTTTGGTGCCTCCGAGAAGCTACCGGAAAAGTATGAGATATTGAGCGAGTTTTTCGATTGCTTGGATGCTTCGATTCGGTTGTTGCGGTTGAGGGGCTTGATGCCAAGCTTTACCAATCTTCGCCCGAAAATTGAGTGTTTAACGGATAGGAGGTTTACAATTAGTCACTTGGCTCAGCTGAAGATTGTTTTACCTGAGGTAATTGAGATTACAAAAGTGCTTGTTAAGGATGAGAGAACCAGTGATATGAAGCCGGATCTTCGTGTCACCATGAATGTTGATGCAGTAGAAAACGATGACAAGTTGAAATCTGAAGGTGGTGGGCATATGCATTTGAGGCGAGCCTTCCGCCATCGGCTTGGAGACATTTCAAAATCTCATCCTGAGGGTTATGAAATTCCAGAAGAAACTCTGCCCCCACCATTCAATTTTGCAGAGCAACATATGCATCCAGATACAATTAAGTGTTCCTTATCATCATCTCCTGAGGCATTGACTGGTGCACATACAGTTGAGCAACCAGAAGCATCCAAAACTTACCTTCAAAGTGATGGCATTCCAGATGAAACACATCCAATGCCATCTGATCAATCAAAGGAGGATTTGAATTCAAACATAAGCAGAATTCCTGACTCGTCATTGCCCAATGAGACATCATTTGAAGCACCAGTAGAGCAGCTACCAGTAATAACAACTCATCTTCCTCAATCTTTTCGAAGGCACTTTTCTTTACCAGCCTTCCAAGGCCGAAATGTTTTAGTTCCAGAGTCAAATTTTAATATAGTTTGCTCCATTGAGGAAGCTAGTGTTGTTGCTTCGTCATTTGAAGCACTAGTGGAGCAGCAACCAGTAATAACATCTCATCTTCCTCAACCTTTTCGAAGGCACTTTTCTCAGCCATCCTTTCAAGCTCGAAATATTTCACTTCCAGAGTCAATTCTCAATGTGGTTTGCTCTGTTGAGGGAGCTAGTACTGCTGTATCATTGACTGGCCAAGTGCCTGCAACTCCAACCAAAGAGACAAGCCCCATTGAAAGTGGTGATGATTTACCCACAAAATGTGCTAGCATTCTGTCTACTCCAAAACTTGCTTCAACTCCAGTCAAAGAGATAGGCCCCATAGAAAATGATGATTTCCCCATAGAAGGTGCTAGTATTCAGTCCACTCCAGCAAAGCTTGCTTCAACTCCTGCTAGATTGATGTCTGCCACACCAGCATTGCGCCCGCCAAAACGCTGTTATATGAGCCCAGAAGACAATTCTACTAGCTCTCCAGAAAAGATGGTTAGGTATCCTCCACGCTCCAGGTCACTGAAATTTGACACTCCTGTGAAGAATAGAATGGTCGAGGATGAAGTACTTGATATGGACAATGCATCAATTGATAATGACTTTACTGATATTCCTCCGGAGGATCTTTTGAAATTGCTCAAAGATGAAGAGAGGACGGCAATAGAGGAGCAAATTCCTGCCTTCTCACAAGCAAAGAGGGATAAACAGATGATTTCCGGCCTACCTAAACTCTTTGACATGATCCATTTCCTATTTCAGTCTATGAAACGTTCTGCCATCACAAAAGAGGAGCTTGTACACAAGCTAATTTGGAATAACTTAGATTTTACGGACACAAATGAAGTTGAAGAGCAGCTAAGCTTGCTGCTAGATCTGGTTCCGGAATGGATATCTGAAGAAAAGTTAGACTCCGGAGGAGATTTGCTTTTGATCCACATTAACAAAATGTCAAATCCAGGTTCTATACGGGCGCAGCTCGAAGCAGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

679

Amino Acids

75.87

Weight (kDa)

5.35

Isoelectric Point (pI)

72.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	91 - 230	2.9e-12	DNA replication factor CDT1 like
CDT1_C	PF16679	557 - 650	5.8e-17	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	1328
AccIII	TCCGGA	3 cut(s)	1660, 1924, 1955
AciI	CCGC	4 cut(s)	185, 337, 601, 1478
AclI	AACGTT	1 cut(s)	1813
AclWI	GGATC	5 cut(s)	205, 516, 1674, 1780, 1969
AcoI	YGGCCR	1 cut(s)	1243
AcsI	RAATTY	6 cut(s)	648, 859, 876, 1024, 1568, 1716
AcuI	CTGAAG	3 cut(s)	452, 585, 1959
AfaI	GTAC	3 cut(s)	1225, 1611, 1842
AfiI	CCNNNNNNNGG	1 cut(s)	1397
AhlI	ACTAGT	1 cut(s)	1084
AjnI	CCWGG	2 cut(s)	1556, 1999
AjuI	GAANNNNNNNTTGG	2 cut(s)	1327, 1359
AleI	CACNNNNGTG	1 cut(s)	1580
Alw21I	GWGCWC	2 cut(s)	116, 757
Alw26I	GTCTC	6 cut(s)	44, 199, 239, 609, 896, 1265
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	5 cut(s)	205, 516, 1674, 1780, 1969
Aor13HI	TCCGGA	3 cut(s)	1660, 1924, 1955
AoxI	GGCC	4 cut(s)	997, 1243, 1366, 1762
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	7 cut(s)	178, 928, 1093, 1897, 1909, 2017, 2027
ApoI	RAATTY	6 cut(s)	648, 859, 876, 1024, 1568, 1716
Asp700I	GAANNNNTTC	1 cut(s)	1171
AspLEI	GCGC	2 cut(s)	1476, 2017
AspS9I	GGNCC	2 cut(s)	225, 1367
AsuHPI	GGTGA	2 cut(s)	511, 1304
AsuII	TTCGAA	2 cut(s)	967, 1132
AsuNHI	GCTAGC	1 cut(s)	1316
AvaII	GGWCC	1 cut(s)	225
AxyI	CCTNAGG	3 cut(s)	447, 636, 738
BaeGI	GKGCMC	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BalI	TGGCCA	1 cut(s)	1245
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	116, 1502
BbsI	GAAGAC	1 cut(s)	1512
Bbv12I	GWGCWC	2 cut(s)	116, 757
BbvI	GCAGC	6 cut(s)	190, 940, 1105, 1896, 1909, 2029
BccI	CCATC	6 cut(s)	612, 797, 841, 1159, 1528, 1829
BceAI	ACGGC	1 cut(s)	1716
BciT130I	CCWGG	2 cut(s)	1558, 2001
BciVI	GTATCC	1 cut(s)	1554
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	6 cut(s)	44, 199, 239, 609, 896, 1265
BcuI	ACTAGT	1 cut(s)	1084
BfaI	CTAG	9 cut(s)	1056, 1085, 1221, 1317, 1404, 1446, 1518, 1913, 2035
BfuI	GTATCC	1 cut(s)	1554
BglII	AGATCT	1 cut(s)	1915
BisI	GCNGC	8 cut(s)	179, 186, 929, 1094, 1898, 1910, 2018, 2028
BlpI	GCTNAGC	2 cut(s)	426, 1901
BlsI	GCNGC	8 cut(s)	180, 187, 930, 1095, 1899, 1911, 2019, 2029
BmcAI	AGTACT	2 cut(s)	1225, 1611
Bme1390I	CCNGG	2 cut(s)	1558, 2001
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	225, 1367
BmiI	GGNNCC	4 cut(s)	165, 259, 1369, 1923
BmrFI	CCNGG	2 cut(s)	1558, 2001
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	6 cut(s)	307, 342, 523, 709, 788, 1637
BmtI	GCTAGC	1 cut(s)	1320
BmuI	ACTGGG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	1512
BpmI	CTGGAG	4 cut(s)	1335, 1404, 1509, 1540
Bpu1102I	GCTNAGC	2 cut(s)	426, 1901
Bpu14I	TTCGAA	2 cut(s)	967, 1132
Bsa29I	ATCGAT	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	228, 994
BsaWI	WCCGGW	4 cut(s)	274, 1660, 1924, 1955
BsaXI	ACNNNNNCTCC	2 cut(s)	1507, 1537
Bsc4I	CCNNNNNNNGG	1 cut(s)	1397
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	8 cut(s)	36, 492, 754, 920, 935, 1100, 1246, 1352
Bse21I	CCTNAGG	3 cut(s)	447, 636, 738
Bse3DI	GCAATG	2 cut(s)	890, 1469
BseAI	TCCGGA	3 cut(s)	1660, 1924, 1955
BseBI	CCWGG	2 cut(s)	1558, 2001
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	228, 994
BseGI	GGATG	8 cut(s)	322, 487, 631, 700, 779, 823, 1151, 1609
BseLI	CCNNNNNNNGG	1 cut(s)	1397
BseMI	GCAATG	2 cut(s)	890, 1469
BseMII	CTCAG	9 cut(s)	24, 101, 117, 203, 438, 440, 627, 729, 1160
BseNI	ACTGG	8 cut(s)	36, 492, 754, 920, 935, 1100, 1246, 1352
BseRI	GAGGAG	3 cut(s)	1724, 1847, 1974
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	6 cut(s)	190, 940, 1105, 1896, 1909, 2029
BshFI	GGCC	4 cut(s)	999, 1245, 1368, 1764
BshNI	GGYRCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	116, 757
BsiSI	CCGG	7 cut(s)	182, 275, 506, 1661, 1761, 1925, 1956
BslI	CCNNNNNNNGG	1 cut(s)	1397
BsmAI	GTCTC	6 cut(s)	44, 199, 239, 609, 896, 1265
BsmBI	CGTCTC	1 cut(s)	199
BsmI	GAATGC	2 cut(s)	807, 1320
BsnI	GGCC	4 cut(s)	999, 1245, 1368, 1764
Bsp119I	TTCGAA	2 cut(s)	967, 1132
Bsp1286I	GDGCHC	3 cut(s)	116, 757, 1502
Bsp13I	TCCGGA	3 cut(s)	1660, 1924, 1955
Bsp1407I	TGTACA	1 cut(s)	1840
Bsp143I	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
Bsp1720I	GCTNAGC	2 cut(s)	426, 1901
BspACI	CCGC	4 cut(s)	185, 337, 601, 1478
BspANI	GGCC	4 cut(s)	999, 1245, 1368, 1764
BspCNI	CTCAG	9 cut(s)	23, 102, 118, 202, 439, 439, 628, 730, 1159
BspDI	ATCGAT	1 cut(s)	216
BspEI	TCCGGA	3 cut(s)	1660, 1924, 1955
BspLI	GGNNCC	4 cut(s)	165, 259, 1369, 1923
BspOI	GCTAGC	1 cut(s)	1320
BspPI	GGATC	5 cut(s)	205, 516, 1674, 1780, 1969
BspQI	GCTCTTC	1 cut(s)	1887
BspT104I	TTCGAA	2 cut(s)	967, 1132
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	890, 1469
BsrFI	RCCGGY	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	1840
BsrI	ACTGG	8 cut(s)	36, 492, 754, 920, 935, 1100, 1246, 1352
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	228, 994
BssMI	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
BssT1I	CCWWGG	1 cut(s)	994
Bst2UI	CCWGG	2 cut(s)	1558, 2001
Bst4CI	ACNGT	2 cut(s)	141, 763
Bst6I	CTCTTC	2 cut(s)	1686, 1887
BstAPI	GCANNNNNTGC	2 cut(s)	697, 1430
BstAUI	TGTACA	1 cut(s)	1840
BstBI	TTCGAA	2 cut(s)	967, 1132
BstC8I	GCNNGC	7 cut(s)	183, 594, 1254, 1318, 1431, 1478, 1907
BstF5I	GGATG	8 cut(s)	322, 487, 631, 700, 779, 823, 1151, 1609
BstHHI	GCGC	2 cut(s)	1476, 2017
BstKTI	GATC	9 cut(s)	195, 200, 216, 511, 841, 1669, 1788, 1918, 1977
BstMAI	GTCTC	6 cut(s)	44, 199, 239, 609, 896, 1265
BstMBI	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
BstMWI	GCNNNNNNNGC	6 cut(s)	589, 697, 1226, 1430, 1466, 1906
BstNI	CCWGG	2 cut(s)	1558, 2001
BstSCI	CCNGG	2 cut(s)	1556, 1999
BstSLI	GKGCMC	1 cut(s)	757
BstV1I	GCAGC	6 cut(s)	190, 940, 1105, 1896, 1909, 2029
BstV2I	GAAGAC	1 cut(s)	1512
BstX2I	RGATCY	4 cut(s)	197, 508, 1666, 1915
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	4 cut(s)	197, 508, 1666, 1915
Bsu15I	ATCGAT	1 cut(s)	216
Bsu36I	CCTNAGG	3 cut(s)	447, 636, 738
BsuI	GTATCC	1 cut(s)	1554
BsuRI	GGCC	4 cut(s)	999, 1245, 1368, 1764
BsuTUI	ATCGAT	1 cut(s)	216
BtsCI	GGATG	8 cut(s)	322, 487, 631, 700, 779, 823, 1151, 1609
BtsIMutI	CAGTG	3 cut(s)	107, 499, 1562
Cac8I	GCNNGC	7 cut(s)	183, 594, 1254, 1318, 1431, 1478, 1907
CfoI	GCGC	2 cut(s)	1476, 2017
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	225, 1367
ClaI	ATCGAT	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	1224, 1610, 1841
CviAII	CATG	2 cut(s)	523, 1783
CviQI	GTAC	3 cut(s)	1224, 1610, 1841
DpnI	GATC	9 cut(s)	194, 199, 215, 510, 840, 1668, 1787, 1917, 1976
DpnII	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
DraI	TTTAAA	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	1243
Eam1104I	CTCTTC	2 cut(s)	1686, 1887
EarI	CTCTTC	2 cut(s)	1686, 1887
EciI	GGCGGA	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	994
Eco24I	GRGCYC	2 cut(s)	116, 1502
Eco32I	GATATC	1 cut(s)	1935
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	452, 585, 1959
Eco81I	CCTNAGG	3 cut(s)	447, 636, 738
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	1367
EcoRI	GAATTC	2 cut(s)	859, 876
EcoRII	CCWGG	2 cut(s)	1556, 1999
EcoRV	GATATC	1 cut(s)	1935
EcoT14I	CCWWGG	1 cut(s)	994
EcoT22I	ATGCAT	3 cut(s)	585, 702, 1630
EcoT38I	GRGCYC	2 cut(s)	116, 1502
ErhI	CCWWGG	1 cut(s)	994
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	526, 1786
FalI	AAGNNNNNCTT	4 cut(s)	707, 739, 1821, 1853
FatI	CATG	2 cut(s)	522, 1782
FauI	CCCGC	1 cut(s)	1485
FauNDI	CATATG	2 cut(s)	579, 696
FbaI	TGATCA	1 cut(s)	838
FblI	GTMKAC	1 cut(s)	1328
Fnu4HI	GCNGC	8 cut(s)	179, 186, 929, 1094, 1898, 1910, 2018, 2028
FokI	GGATG	8 cut(s)	329, 494, 618, 687, 766, 810, 1138, 1616
FriOI	GRGCYC	2 cut(s)	116, 1502
Fsp4HI	GCNGC	8 cut(s)	179, 186, 929, 1094, 1898, 1910, 2018, 2028
FspBI	CTAG	9 cut(s)	1056, 1085, 1221, 1317, 1404, 1446, 1518, 1913, 2035
GlaI	GCGC	2 cut(s)	1475, 2016
GluI	GCNGC	8 cut(s)	179, 186, 929, 1094, 1898, 1910, 2018, 2028
GsuI	CTGGAG	4 cut(s)	1335, 1404, 1509, 1540
HaeIII	GGCC	4 cut(s)	999, 1245, 1368, 1764
HapII	CCGG	7 cut(s)	182, 275, 506, 1661, 1761, 1925, 1956
HhaI	GCGC	2 cut(s)	1476, 2017
Hin1II	CATG	2 cut(s)	526, 1786
Hin6I	GCGC	2 cut(s)	1474, 2015
HinP1I	GCGC	2 cut(s)	1474, 2015
HindIII	AAGCTT	4 cut(s)	154, 358, 1427, 1903
HinfI	GANTC	7 cut(s)	104, 218, 325, 884, 1019, 1184, 1952
HpaII	CCGG	7 cut(s)	182, 275, 506, 1661, 1761, 1925, 1956
HphI	GGTGA	2 cut(s)	511, 1304
Hpy166II	GTNNAC	5 cut(s)	408, 755, 1329, 1416, 1843
Hpy8I	GTNNAC	5 cut(s)	408, 755, 1329, 1416, 1843
HpyAV	CCTTC	9 cut(s)	61, 560, 607, 803, 963, 1000, 1128, 1391, 1735
HpyCH4III	ACNGT	2 cut(s)	141, 763
HpyCH4IV	ACGT	1 cut(s)	1813
HpyCH4V	TGCA	8 cut(s)	95, 536, 583, 686, 700, 755, 1256, 1628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	589, 697, 1226, 1430, 1466, 1906
HpySE526I	ACGT	1 cut(s)	1813
Hsp92II	CATG	2 cut(s)	526, 1786
HspAI	GCGC	2 cut(s)	1474, 2015
Kpn2I	TCCGGA	3 cut(s)	1660, 1924, 1955
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
LguI	GCTCTTC	1 cut(s)	1887
LmnI	GCTCC	9 cut(s)	90, 119, 163, 1046, 1090, 1217, 1559, 1711, 1834
Lsp1109I	GCAGC	6 cut(s)	190, 940, 1105, 1896, 1909, 2029
LweI	GCATC	6 cut(s)	307, 342, 523, 709, 788, 1637
MaeI	CTAG	9 cut(s)	1056, 1085, 1221, 1317, 1404, 1446, 1518, 1913, 2035
MaeII	ACGT	1 cut(s)	1813
MaeIII	GTNAC	4 cut(s)	146, 416, 517, 1560
MalI	GATC	9 cut(s)	194, 199, 215, 510, 840, 1668, 1787, 1917, 1976
MboI	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
MfeI	CAATTG	1 cut(s)	1632
MflI	RGATCY	4 cut(s)	197, 508, 1666, 1915
MhlI	GDGCHC	3 cut(s)	116, 757, 1502
MlsI	TGGCCA	1 cut(s)	1245
MluNI	TGGCCA	1 cut(s)	1245
MlyI	GAGTC	5 cut(s)	98, 878, 1028, 1193, 1946
MmeI	TCCRAC	1 cut(s)	1286
Mox20I	TGGCCA	1 cut(s)	1245
Mph1103I	ATGCAT	3 cut(s)	585, 702, 1630
MroI	TCCGGA	3 cut(s)	1660, 1924, 1955
MroNI	GCCGGC	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	1171
MscI	TGGCCA	1 cut(s)	1245
MseI	TTAA	6 cut(s)	74, 392, 477, 714, 1029, 1983
MslI	CAYNNNNRTG	2 cut(s)	255, 1580
Msp20I	TGGCCA	1 cut(s)	1245
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	7 cut(s)	182, 275, 506, 1661, 1761, 1925, 1956
MspR9I	CCNGG	2 cut(s)	1558, 2001
MunI	CAATTG	1 cut(s)	1632
Mva1269I	GAATGC	2 cut(s)	807, 1320
MvaI	CCWGG	2 cut(s)	1558, 2001
MwoI	GCNNNNNNNGC	6 cut(s)	589, 697, 1226, 1430, 1466, 1906
NaeI	GCCGGC	1 cut(s)	183
NdeI	CATATG	2 cut(s)	579, 696
NdeII	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
NgoMIV	GCCGGC	1 cut(s)	181
NheI	GCTAGC	1 cut(s)	1316
NlaIII	CATG	2 cut(s)	526, 1786
NlaIV	GGNNCC	4 cut(s)	165, 259, 1369, 1923
NmuCI	GTSAC	4 cut(s)	146, 416, 517, 1560
NsiI	ATGCAT	3 cut(s)	585, 702, 1630
NspV	TTCGAA	2 cut(s)	967, 1132
OliI	CACNNNNGTG	1 cut(s)	1580
PciSI	GCTCTTC	1 cut(s)	1887
PctI	GAATGC	2 cut(s)	807, 1320
PdiI	GCCGGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	1171
PfeI	GAWTC	2 cut(s)	218, 325
PkrI	GCNGC	8 cut(s)	180, 187, 930, 1095, 1899, 1911, 2019, 2029
PleI	GAGTC	5 cut(s)	98, 878, 1027, 1192, 1946
PpsI	GAGTC	5 cut(s)	98, 878, 1027, 1192, 1946
Psp124BI	GAGCTC	1 cut(s)	116
Psp1406I	AACGTT	1 cut(s)	1813
Psp6I	CCWGG	2 cut(s)	1556, 1999
PspGI	CCWGG	2 cut(s)	1556, 1999
PspN4I	GGNNCC	4 cut(s)	165, 259, 1369, 1923
PspPI	GGNCC	2 cut(s)	225, 1367
PsuI	RGATCY	4 cut(s)	197, 508, 1666, 1915
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	3 cut(s)	1225, 1611, 1842
RsaNI	GTAC	3 cut(s)	1224, 1610, 1841
RseI	CAYNNNNRTG	2 cut(s)	255, 1580
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	1887
SaqAI	TTAA	6 cut(s)	74, 392, 477, 714, 1029, 1983
SatI	GCNGC	8 cut(s)	179, 186, 929, 1094, 1898, 1910, 2018, 2028
Sau3AI	GATC	9 cut(s)	192, 197, 213, 508, 838, 1666, 1785, 1915, 1974
Sau96I	GGNCC	2 cut(s)	225, 1367
ScaI	AGTACT	2 cut(s)	1225, 1611
SchI	GAGTC	5 cut(s)	98, 878, 1028, 1193, 1946
ScrFI	CCNGG	2 cut(s)	1558, 2001
SduI	GDGCHC	3 cut(s)	116, 757, 1502
SfaNI	GCATC	6 cut(s)	307, 342, 523, 709, 788, 1637
SfuI	TTCGAA	2 cut(s)	967, 1132
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	255, 1580
SpeI	ACTAGT	1 cut(s)	1084
SsiI	CCGC	4 cut(s)	185, 337, 601, 1478
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	9 cut(s)	1056, 1085, 1221, 1317, 1404, 1446, 1518, 1913, 2035
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	1556, 1999
StyI	CCWWGG	1 cut(s)	994
TaaI	ACNGT	2 cut(s)	141, 763
TaiI	ACGT	1 cut(s)	1816
TaqI	TCGA	9 cut(s)	102, 216, 306, 323, 967, 1132, 1165, 1599, 2022
TatI	WGTACW	3 cut(s)	1223, 1609, 1840
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	218, 325
Tru1I	TTAA	6 cut(s)	74, 392, 477, 714, 1029, 1983
Tru9I	TTAA	6 cut(s)	74, 392, 477, 714, 1029, 1983
TscAI	CASTG	3 cut(s)	114, 499, 1569
TseFI	GTSAC	4 cut(s)	146, 416, 517, 1560
TseI	GCWGC	7 cut(s)	178, 928, 1093, 1897, 1909, 2017, 2027
Tsp45I	GTSAC	4 cut(s)	146, 416, 517, 1560
TspDTI	ATGAA	8 cut(s)	515, 539, 660, 831, 1620, 1704, 1823, 1899
TspGWI	ACGGA	3 cut(s)	134, 410, 1889
TspRI	CASTG	3 cut(s)	114, 499, 1569
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	6 cut(s)	648, 859, 876, 1024, 1568, 1716
XmiI	GTMKAC	1 cut(s)	1328
XmnI	GAANNNNTTC	1 cut(s)	1171
XspI	CTAG	9 cut(s)	1056, 1085, 1221, 1317, 1404, 1446, 1518, 1913, 2035
ZrmI	AGTACT	2 cut(s)	1225, 1611
Zsp2I	ATGCAT	3 cut(s)	585, 702, 1630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.