Rroxscaffold_7G00180090

CDT1-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
19618939 .. 19622545
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180090.1

Sequence Viewer

Length: 1620 bp
ATGTTGGGTGAGTTTTTCAATTGCTTGGATAGTTCGATTCGGTTGTTGAGGTCTAAGGGATTGAAGACGAGCTTCAGGAACATCTGCCCTGCGGTTGAGGATTTGACTGATAGGAGGTTTACATATAGTCACTTGGCTCAGATGAAGTTTATTTTACCTGAGGTGATTGAGATAAAGAAAGTGCTTGTGTTGGATGAGCGAACCAGTTGTTTGAAACCGGATCTTCATGTTGCCTTGAATGTTCAAGCATTAGAGAACGATGGCAAGTCGAAATCTGAAGGTGGGGGGATTGTGCAGTTGAAGAAGACACTGAATTTGAGAAGGGTGTTCCGTGATCGGCTTGTGGAGGTTTCAAGATCCTATCCTGAGGATTATGAAATTCCAGAAGAAACTCTGCCCCATCCATTCAACTGTGGCAAGCAAGATATACATAGGGTCAAGTTTTCCTCCTCATCCTCTCCTGGGGAGGTGTCAACCGATGTAGACACAGTTGAGCAACCAGCAGTTTTTAAGACCTGCCTTCAGGGTGATGAAATTCCAGATGAAACACATCAAACGCCATCTAATCAATCAATAGAGGATTTGAATTTTAATATAATCAGAACTCCCAGTGTTCCATTGCCTATTAAGACATCATTTGAAGCACCTAAAAATCAGCAACCAGAAATAGCATCTCATCTTTCGCTATCTTTTCGAAGGCACTTTTCTCAGAAAGCTAAACACAGTGAGTCAGAGAACATAAAGGATGATCCACCGAAGGAATCCCTCCGAGCTTCAAATCTTTCAGTTTCAGAGTCAAATCTCAATATAGTTTGCTCCGTTAAGGAAGATGGTATTGCTGCTTCTTCACATGGTCAAGTGCTCAATACAGTTTGCTCTGTTATGGAAGATAGTATTGCTGCTTCTTCCCAATGTCAAGTGCTTGCAACCCCAACCAAAAAGATAGACCCTTTAGAGGATGATGGTTTGCCTGGAAATAATACTGCCATTCAGTCTGCTCCAGGAAACCTTGCTTCAACTCCAGCAAAGCTTGTTTCCTCTCCAGCAAAGTTGATGTCCATCACACCTGCACCGCACCCACCAAAGCGATGTTTTATGAGCCCAGAGGATAGCTCACCGAACAAGTTGGTCAGGCGTCCTCCACGCACCAGGTCGTTGAAATTTGACACTCCTGTGAAGAGTAGAAATGCTGAAGATGAAGTTCTTGATACGGATGACGCATCAATGGATAAAGACATTCTTGATATTCTTCCTAGGGATCTTTTGCAATCGCTTAGAGATAAGGAGAGGAAGGCAACAGAGGAGAGAAATCCAGCCATCTCACAAGCTAAGAGGCGGCAGAAAATGATTGCCAACCTGCCTAAACTCTTTAACATGATTCATTTCCTAGTTCAGTCAATGAACCGTTCTTTTATCACCAAACAGGAGCTTGTACACAAGATAATTTGGAACCATTGTGACATGATTGACAGAAAGGATGTTGAAGAGCAACTGAATTTACTGCTAGAATTGGTTCCGGACTGGATTTCTGAAAAGAAGCTTGGAGGAGATTTGCTTTTCAACATTAATAAAAGATCGTGTCCTGAGGCAATACGTTCCCGTCTTGAAGAAGCAAACTGA

Protein Analysis

539

Amino Acids

60.54

Weight (kDa)

6.39

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDT1 PF08839 2 - 117 1.4e-10 DNA replication factor CDT1 like
CDT1_C PF16679 420 - 514 7.4e-23 DNA replication factor Cdt1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1075
Acc36I ACCTGC 3 cut(s) 524, 1075, 1365
AccI GTMKAC 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 1516
AciI CCGC 3 cut(s) 92, 1073, 1336
AclWI GGATC 4 cut(s) 228, 351, 743, 1266
AcsI RAATTY 6 cut(s) 313, 378, 534, 586, 1160, 1495
AcuI CTGAAG 4 cut(s) 58, 297, 506, 1212
AcyI GRCGYC 1 cut(s) 1135
AfaI GTAC 1 cut(s) 1434
AfiI CCNNNNNNNGG 2 cut(s) 462, 955
AjnI CCWGG 4 cut(s) 460, 970, 1000, 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 1524, 1556
AleI CACNNNNGTG 1 cut(s) 1172
AluBI AGCT 8 cut(s) 72, 716, 773, 1030, 1113, 1328, 1429, 1540
AluI AGCT 8 cut(s) 72, 716, 773, 1030, 1113, 1328, 1429, 1540
Alw21I GWGCWC 1 cut(s) 864
AlwI GGATC 4 cut(s) 228, 351, 743, 1266
Aor13HI TCCGGA 1 cut(s) 1516
ApeKI GCWGC 2 cut(s) 839, 899
ApoI RAATTY 6 cut(s) 313, 378, 534, 586, 1160, 1495
ArsI GACNNNNNNTTYG 4 cut(s) 298, 330, 1040, 1072
AseI ATTAAT 1 cut(s) 1566
Asp700I GAANNNNTTC 1 cut(s) 1512
AspA2I CCTAGG 1 cut(s) 1253
AsuHPI GGTGA 5 cut(s) 20, 175, 539, 1107, 1408
AsuII TTCGAA 1 cut(s) 694
AvrII CCTAGG 1 cut(s) 1253
AxyI CCTNAGG 3 cut(s) 159, 366, 1584
BanII GRGCYC 1 cut(s) 1103
BarI GAAGNNNNNNTAC 4 cut(s) 826, 858, 886, 918
BbsI GAAGAC 2 cut(s) 71, 311
Bbv12I GWGCWC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 826, 886
BccI CCATC 7 cut(s) 254, 408, 568, 824, 956, 1067, 1325
BciT130I CCWGG 4 cut(s) 462, 972, 1002, 1150
BfaI CTAG 3 cut(s) 1254, 1388, 1505
BfuAI ACCTGC 3 cut(s) 524, 1075, 1365
BisI GCNGC 3 cut(s) 840, 900, 1337
BlnI CCTAGG 1 cut(s) 1253
BlsI GCNGC 3 cut(s) 841, 901, 1338
Bme1390I CCNGG 4 cut(s) 462, 972, 1002, 1150
BmiI GGNNCC 2 cut(s) 1451, 1515
BmrFI CCNGG 4 cut(s) 462, 972, 1002, 1150
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 680, 1229
BmuI ACTGGG 1 cut(s) 603
BpiI GAAGAC 2 cut(s) 71, 311
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 3 cut(s) 984, 1005, 1026
Bpu14I TTCGAA 1 cut(s) 694
BsaBI GATNNNNATC 1 cut(s) 1058
BsaHI GRCGYC 1 cut(s) 1135
BsaJI CCNNGG 2 cut(s) 461, 1253
BsaWI WCCGGW 2 cut(s) 217, 1516
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 955
Bse1I ACTGG 3 cut(s) 204, 609, 1526
Bse21I CCTNAGG 3 cut(s) 159, 366, 1584
Bse3DI GCAATG 1 cut(s) 617
Bse8I GATNNNNATC 1 cut(s) 1058
BseAI TCCGGA 1 cut(s) 1516
BseBI CCWGG 4 cut(s) 462, 972, 1002, 1150
BseDI CCNNGG 2 cut(s) 461, 1253
BseGI GGATG 7 cut(s) 199, 400, 452, 751, 964, 1219, 1483
BseJI GATNNNNATC 1 cut(s) 1058
BseLI CCNNNNNNNGG 2 cut(s) 462, 955
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 5 cut(s) 150, 152, 357, 722, 1575
BseNI ACTGG 3 cut(s) 204, 609, 1526
BseRI GAGGAG 3 cut(s) 439, 1316, 1560
BseXI GCAGC 2 cut(s) 826, 886
BsgI GTGCAG 2 cut(s) 314, 1053
BsiHKAI GWGCWC 1 cut(s) 864
BsiSI CCGG 2 cut(s) 218, 1517
BslI CCNNNNNNNGG 2 cut(s) 462, 955
Bsp119I TTCGAA 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 864, 1103
Bsp13I TCCGGA 1 cut(s) 1516
Bsp1407I TGTACA 1 cut(s) 1432
Bsp143I GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
BspACI CCGC 3 cut(s) 92, 1073, 1336
BspCNI CTCAG 5 cut(s) 151, 151, 358, 721, 1576
BspEI TCCGGA 1 cut(s) 1516
BspLI GGNNCC 2 cut(s) 1451, 1515
BspMI ACCTGC 3 cut(s) 524, 1075, 1365
BspPI GGATC 4 cut(s) 228, 351, 743, 1266
BspQI GCTCTTC 1 cut(s) 1479
BspT104I TTCGAA 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 617
BsrGI TGTACA 1 cut(s) 1432
BsrI ACTGG 3 cut(s) 204, 609, 1526
BssECI CCNNGG 2 cut(s) 461, 1253
BssMI GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
BssNI GRCGYC 1 cut(s) 1135
BssT1I CCWWGG 1 cut(s) 1253
Bst2UI CCWGG 4 cut(s) 462, 972, 1002, 1150
Bst4CI ACNGT 5 cut(s) 413, 490, 725, 871, 1406
Bst6I CTCTTC 2 cut(s) 1172, 1479
BstACI GRCGYC 1 cut(s) 1135
BstAUI TGTACA 1 cut(s) 1432
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 2 cut(s) 419, 924
BstDEI CTNAG 8 cut(s) 54, 138, 159, 366, 708, 1274, 1329, 1584
BstF5I GGATG 7 cut(s) 199, 400, 452, 751, 964, 1219, 1483
BstKTI GATC 6 cut(s) 223, 337, 359, 751, 1261, 1577
BstMBI GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
BstNI CCWGG 4 cut(s) 462, 972, 1002, 1150
BstSCI CCNGG 4 cut(s) 460, 970, 1000, 1148
BstV1I GCAGC 2 cut(s) 826, 886
BstV2I GAAGAC 2 cut(s) 71, 311
BstX2I RGATCY 3 cut(s) 220, 356, 1258
BstYI RGATCY 3 cut(s) 220, 356, 1258
Bsu36I CCTNAGG 3 cut(s) 159, 366, 1584
BtgZI GCGATG 1 cut(s) 1102
BtsCI GGATG 7 cut(s) 199, 400, 452, 751, 964, 1219, 1483
BtsIMutI CAGTG 3 cut(s) 308, 616, 730
BveI ACCTGC 3 cut(s) 524, 1075, 1365
Cac8I GCNNGC 2 cut(s) 419, 924
CseI GACGC 2 cut(s) 1124, 1226
CsiI ACCWGGT 1 cut(s) 1148
Csp6I GTAC 1 cut(s) 1433
CviAII CATG 4 cut(s) 227, 851, 1375, 1462
CviQI GTAC 1 cut(s) 1433
DdeI CTNAG 8 cut(s) 54, 138, 159, 366, 708, 1274, 1329, 1584
DpnI GATC 6 cut(s) 222, 336, 358, 750, 1260, 1576
DpnII GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
Eam1104I CTCTTC 2 cut(s) 1172, 1479
EarI CTCTTC 2 cut(s) 1172, 1479
Eco130I CCWWGG 1 cut(s) 1253
Eco24I GRGCYC 1 cut(s) 1103
Eco57I CTGAAG 4 cut(s) 58, 297, 506, 1212
Eco81I CCTNAGG 3 cut(s) 159, 366, 1584
EcoRII CCWGG 4 cut(s) 460, 970, 1000, 1148
EcoT14I CCWWGG 1 cut(s) 1253
EcoT38I GRGCYC 1 cut(s) 1103
ErhI CCWWGG 1 cut(s) 1253
FaeI CATG 4 cut(s) 230, 854, 1378, 1465
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 1224, 1256
FatI CATG 4 cut(s) 226, 850, 1374, 1461
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 840, 900, 1337
FokI GGATG 7 cut(s) 206, 387, 439, 758, 971, 1226, 1490
FriOI GRGCYC 1 cut(s) 1103
Fsp4HI GCNGC 3 cut(s) 840, 900, 1337
FspBI CTAG 3 cut(s) 1254, 1388, 1505
GluI GCNGC 3 cut(s) 840, 900, 1337
GsuI CTGGAG 3 cut(s) 984, 1005, 1026
HapII CCGG 2 cut(s) 218, 1517
HgaI GACGC 2 cut(s) 1124, 1226
Hin1I GRCGYC 1 cut(s) 1135
Hin1II CATG 4 cut(s) 230, 854, 1378, 1465
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HindIII AAGCTT 2 cut(s) 1028, 1538
HinfI GANTC 5 cut(s) 37, 728, 761, 794, 1378
HpaII CCGG 2 cut(s) 218, 1517
HphI GGTGA 5 cut(s) 20, 175, 539, 1107, 1408
Hpy166II GTNNAC 4 cut(s) 120, 474, 484, 1435
Hpy188I TCNGA 8 cut(s) 141, 277, 602, 711, 733, 770, 793, 1531
Hpy8I GTNNAC 4 cut(s) 120, 474, 484, 1435
HpyAV CCTTC 6 cut(s) 272, 315, 530, 690, 751, 1285
HpyCH4III ACNGT 5 cut(s) 413, 490, 725, 871, 1406
HpyCH4IV ACGT 1 cut(s) 1594
HpyCH4V TGCA 4 cut(s) 295, 926, 1070, 1267
HpyF3I CTNAG 8 cut(s) 54, 138, 159, 366, 708, 1274, 1329, 1584
HpySE526I ACGT 1 cut(s) 1594
Hsp92I GRCGYC 1 cut(s) 1135
Hsp92II CATG 4 cut(s) 230, 854, 1378, 1465
Kpn2I TCCGGA 1 cut(s) 1516
Kzo9I GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
LguI GCTCTTC 1 cut(s) 1479
LmnI GCTCC 3 cut(s) 821, 1003, 1426
Lsp1109I GCAGC 2 cut(s) 826, 886
LweI GCATC 2 cut(s) 680, 1229
MabI ACCWGGT 1 cut(s) 1148
MaeI CTAG 3 cut(s) 1254, 1388, 1505
MaeII ACGT 1 cut(s) 1594
MaeIII GTNAC 2 cut(s) 128, 1457
MalI GATC 6 cut(s) 222, 336, 358, 750, 1260, 1576
MboI GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
MfeI CAATTG 1 cut(s) 19
MflI RGATCY 3 cut(s) 220, 356, 1258
MhlI GDGCHC 2 cut(s) 864, 1103
MluCI AATT 9 cut(s) 19, 313, 378, 534, 586, 1160, 1443, 1495, 1508
MlyI GAGTC 2 cut(s) 737, 803
MmeI TCCRAC 1 cut(s) 171
MroI TCCGGA 1 cut(s) 1516
MroXI GAANNNNTTC 1 cut(s) 1512
MseI TTAA 6 cut(s) 510, 591, 627, 822, 1371, 1566
MslI CAYNNNNRTG 1 cut(s) 1172
MspI CCGG 2 cut(s) 218, 1517
MspR9I CCNGG 4 cut(s) 462, 972, 1002, 1150
MunI CAATTG 1 cut(s) 19
MvaI CCWGG 4 cut(s) 462, 972, 1002, 1150
NdeII GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
NlaIII CATG 4 cut(s) 230, 854, 1378, 1465
NlaIV GGNNCC 2 cut(s) 1451, 1515
NmuCI GTSAC 2 cut(s) 128, 1457
NspV TTCGAA 1 cut(s) 694
OliI CACNNNNGTG 1 cut(s) 1172
PaqCI CACCTGC 1 cut(s) 1075
PciSI GCTCTTC 1 cut(s) 1479
PdmI GAANNNNTTC 1 cut(s) 1512
PfeI GAWTC 3 cut(s) 37, 761, 1378
PfoI TCCNGGA 1 cut(s) 1000
PkrI GCNGC 3 cut(s) 841, 901, 1338
PleI GAGTC 2 cut(s) 736, 802
PpsI GAGTC 2 cut(s) 736, 802
PshBI ATTAAT 1 cut(s) 1566
Psp6I CCWGG 4 cut(s) 460, 970, 1000, 1148
PspGI CCWGG 4 cut(s) 460, 970, 1000, 1148
PspN4I GGNNCC 2 cut(s) 1451, 1515
PsuI RGATCY 3 cut(s) 220, 356, 1258
RsaI GTAC 1 cut(s) 1434
RsaNI GTAC 1 cut(s) 1433
RseI CAYNNNNRTG 1 cut(s) 1172
SapI GCTCTTC 1 cut(s) 1479
SaqAI TTAA 6 cut(s) 510, 591, 627, 822, 1371, 1566
SatI GCNGC 3 cut(s) 840, 900, 1337
Sau3AI GATC 6 cut(s) 220, 334, 356, 748, 1258, 1574
SchI GAGTC 2 cut(s) 737, 803
ScrFI CCNGG 4 cut(s) 462, 972, 1002, 1150
SduI GDGCHC 2 cut(s) 864, 1103
SexAI ACCWGGT 1 cut(s) 1148
SfaNI GCATC 2 cut(s) 680, 1229
SfuI TTCGAA 1 cut(s) 694
SmiMI CAYNNNNRTG 1 cut(s) 1172
Sse9I AATT 9 cut(s) 19, 313, 378, 534, 586, 1160, 1443, 1495, 1508
SsiI CCGC 3 cut(s) 92, 1073, 1336
SspMI CTAG 3 cut(s) 1254, 1388, 1505
StyD4I CCNGG 4 cut(s) 460, 970, 1000, 1148
StyI CCWWGG 1 cut(s) 1253
TaaI ACNGT 5 cut(s) 413, 490, 725, 871, 1406
TaiI ACGT 1 cut(s) 1597
TaqI TCGA 3 cut(s) 35, 269, 694
TasI AATT 9 cut(s) 19, 313, 378, 534, 586, 1160, 1443, 1495, 1508
TatI WGTACW 1 cut(s) 1432
TauI GCSGC 1 cut(s) 1339
TfiI GAWTC 3 cut(s) 37, 761, 1378
Tru1I TTAA 6 cut(s) 510, 591, 627, 822, 1371, 1566
Tru9I TTAA 6 cut(s) 510, 591, 627, 822, 1371, 1566
TscAI CASTG 3 cut(s) 315, 616, 730
TseFI GTSAC 2 cut(s) 128, 1457
TseI GCWGC 2 cut(s) 839, 899
Tsp45I GTSAC 2 cut(s) 128, 1457
TspDTI ATGAA 8 cut(s) 158, 215, 390, 546, 558, 1212, 1370, 1415
TspGWI ACGGA 3 cut(s) 320, 808, 1226
TspRI CASTG 3 cut(s) 315, 616, 730
VspI ATTAAT 1 cut(s) 1566
XapI RAATTY 6 cut(s) 313, 378, 534, 586, 1160, 1495
XmaJI CCTAGG 1 cut(s) 1253
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 1512
XspI CTAG 3 cut(s) 1254, 1388, 1505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.