Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Forward (+)

51680980 .. 51684664

Gene Structure 3685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGAGTTCCTCAGAGACCCAAGAAGGTTCAGATCTGGCTCTGAAATTCAAATCGAAGAAACCCTTAACCCAAACGAAGCCCCAATCGGTGGAGAAAGACCCGATTTTGACCGCGCCGACGCCGGAGAAGACCCTGCAGCCGGCGCCGCCTCGAGCCCGGAACCGGAACTTCGCGCTATCCATCGGAGAAATCAGGAGAGCCGCGGCGAAAAGCGTCGGCGAGAAGAAGGAGCAGATCGGATCTGCCAGACGGCAAATCGCTTGGCCGGAGGAGAATCCGAAGAAGGCCCGTGTGGGGGCCCCGAAAAAGCTACCGGAGAAGTTTGAAATGTTGGGTGAGTTTTTCAATTGCTTGGATAGTTCGATTCGGTTGTTGAGGTCTAAGGGATTGAAGACGAGCTTCAGGAACATCTGCCCGGCGGTTGAGGATTTGACTGATAGGAGGTTTACATATAGTCACTTGGCTCAGATGAAGTTTATTTTGCCTGAGGTGATTGAGATAAAGAAAGTGCTTGTGTTGGATGAGCGAACCAGTTGTTTGAAACCGGATCTTCATGTTGCCTTGAATGTTCAAGCATTAGAGAACGATGGCAAGTCGAAATCTGAAGGTGGGGGGATTGTGCAGTTGAAGAAGACACTGAATTTGAGAAGGGTGTTCCGTGATCGGCTTGTGCAGGTTTCCAGATCCTATCCTGAGGATTATGAAATTCCGGAAGAAACTCTGCCCCATCCATTCAACTGTGGCAAGCAAGATATACATAGGGTCAAGTTTTCCTCCTCATCCTCTCCTGGGGAGGTGTCAACCGATGTAGACACAGTTGAGCAACCAGCAGTTTTTAAGACCTGCCTTCAGGGTGATGAAATTCCAGATGAAACACATCAAACGCCATCTAATCAATCAATGGAGGATTTGAATTTTAACATAATCAGAACTCCCAGTGTTCCATTGCCTATTAAGACATCATTTGAAGCACCTAAAAATCAGCAACCAGAAATAGCATCTCATCTTTCGCTATCTTTTCGAAGGCACTTTTCTCAGAAAGCTAAACACAGTGAGTCAGAGAACATACAGGATGATCCACCGAAGGCATCCCTCCGAGCTTCAAATCTTTCAGTTTCAGAGTCAAATCTCAATACAGTTTGCTCCGTTAAGGAAGATGATATTGCTGCTTCTTCACATGGTCAAGTGCTCAATACAGTTTGCTCTGTTATGGAAGATAGTATTGCTGCTTCTTCCCATCGTCAAGTGCTTGCAACCCCAACCAAAAAGATAGACCCTTTAGAGGATGATGGTTTGCCTGGAAATAATACTGCCATTCAGTCTGCTCCAGGAAAGCTTGCTTCAACTCCAGCAAAGCTTGTTTCCTCTCCAGCAAAGTTGATGTCCATCACACCTGCACCGCACCCACCAAAGCGATGTTTTATGAGCCCAGAGGATAGCTCACTGAACAAGTTGGTCAGGCGTCCTCCACGCACCAGGTCGTTGAAATTTGACACTCCTGTGAAGAGTAGAAATGCTGAAGATGAAGTTCTTGATACGGATGAGGCATCAATGGATAAAGACATTCTTGATATTCTTCCGAGGGATCTTTTGCAATCGCTTAGAGATAAGGAGAGGAAGGCAACAGAGGAGAGAAATCCAGCCATCTCACAAGCTAAGAGGCGGCAGAAAATGATTGCCAACCTGCCGAAACTCTTTAACATGATTCATTTCCTAGTTCAGTCAATGAACCGTTCTTTTATCACCAAACAGGAGCTTGTACACAAGATAATTTGGAACCATTGTGACATGATTGACAGAAAGGATGTTGAAGAGCAACTGAATTTACTGCTAGAATTGGTTCCAGACTGGATTTCTGAAAAGAAACTTGGAGGAGATTTGCTTTTCAACATTAATAAAAGATCATGTCCTGAGGCAATACGTTCCCGTCTTGAAGAAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

648

Amino Acids

72.69

Weight (kDa)

8.78

Isoelectric Point (pI)

65.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	104 - 226	5.6e-13	DNA replication factor CDT1 like
CDT1_C	PF16679	529 - 623	9.8e-23	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1402
Acc36I	ACCTGC	4 cut(s)	664, 851, 1402, 1692
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	810
AccII	CGCG	3 cut(s)	113, 173, 203
AccIII	TCCGGA	1 cut(s)	709
AciI	CCGC	7 cut(s)	111, 146, 201, 203, 419, 1400, 1663
AclWI	GGATC	5 cut(s)	247, 555, 678, 1070, 1593
AcoI	YGGCCR	1 cut(s)	263
AcsI	RAATTY	7 cut(s)	44, 640, 705, 861, 913, 1487, 1822
AcuI	CTGAAG	4 cut(s)	385, 624, 833, 1539
AcyI	GRCGYC	3 cut(s)	119, 143, 1462
AfaI	GTAC	1 cut(s)	1761
AfiI	CCNNNNNNNGG	7 cut(s)	88, 139, 162, 294, 295, 789, 1282
AjnI	CCWGG	4 cut(s)	787, 1297, 1327, 1475
AjuI	GAANNNNNNNTTGG	2 cut(s)	1851, 1883
AleI	CACNNNNGTG	1 cut(s)	1499
AluBI	AGCT	9 cut(s)	310, 399, 1043, 1100, 1336, 1357, 1440, 1655, 1756
AluI	AGCT	9 cut(s)	310, 399, 1043, 1100, 1336, 1357, 1440, 1655, 1756
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	5 cut(s)	247, 555, 678, 1070, 1593
Ama87I	CYCGRG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	709
AoxI	GGCC	3 cut(s)	263, 285, 297
ApaI	GGGCCC	1 cut(s)	301
ApeKI	GCWGC	3 cut(s)	136, 1166, 1226
ApoI	RAATTY	7 cut(s)	44, 640, 705, 861, 913, 1487, 1822
ArsI	GACNNNNNNTTYG	4 cut(s)	625, 657, 1367, 1399
AseI	ATTAAT	1 cut(s)	1893
Asp700I	GAANNNNTTC	1 cut(s)	1839
AspLEI	GCGC	3 cut(s)	115, 145, 175
AspS9I	GGNCC	3 cut(s)	286, 297, 298
AsuC2I	CCSGG	2 cut(s)	157, 416
AsuHPI	GGTGA	4 cut(s)	347, 502, 866, 1735
AsuII	TTCGAA	1 cut(s)	1021
AvaI	CYCGRG	1 cut(s)	150
AxyI	CCTNAGG	3 cut(s)	486, 693, 1911
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	3 cut(s)	157, 301, 1430
BarI	GAAGNNNNNNTAC	2 cut(s)	1213, 1245
BbsI	GAAGAC	3 cut(s)	134, 398, 638
Bbv12I	GWGCWC	1 cut(s)	1191
BbvI	GCAGC	3 cut(s)	148, 1153, 1213
BccI	CCATC	8 cut(s)	188, 581, 735, 895, 1245, 1283, 1394, 1652
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	4 cut(s)	789, 1299, 1329, 1477
BcnI	CCSGG	2 cut(s)	157, 416
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	1715, 1832
BfmI	CTRYAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	146
BfuAI	ACCTGC	4 cut(s)	664, 851, 1402, 1692
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	7 cut(s)	137, 146, 201, 204, 1167, 1227, 1664
BlsI	GCNGC	7 cut(s)	138, 147, 202, 205, 1168, 1228, 1665
Bme1390I	CCNGG	6 cut(s)	157, 416, 789, 1299, 1329, 1477
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	286, 297, 298
BmiI	GGNNCC	7 cut(s)	144, 161, 298, 299, 300, 1778, 1842
BmrFI	CCNGG	6 cut(s)	157, 416, 789, 1299, 1329, 1477
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	3 cut(s)	1007, 1097, 1556
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	3 cut(s)	134, 398, 638
BplI	GAGNNNNNCTC	2 cut(s)	1424, 1456
BpmI	CTGGAG	3 cut(s)	1311, 1332, 1353
Bpu14I	TTCGAA	1 cut(s)	1021
BpuMI	CCSGG	2 cut(s)	157, 416
BsaBI	GATNNNNATC	1 cut(s)	1385
BsaHI	GRCGYC	3 cut(s)	119, 143, 1462
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	201, 788, 1580
BsaWI	WCCGGW	4 cut(s)	162, 313, 544, 709
Bsc4I	CCNNNNNNNGG	7 cut(s)	88, 139, 162, 294, 295, 789, 1282
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	531, 936, 1853
Bse21I	CCTNAGG	3 cut(s)	486, 693, 1911
Bse3DI	GCAATG	1 cut(s)	944
Bse8I	GATNNNNATC	1 cut(s)	1385
BseAI	TCCGGA	1 cut(s)	709
BseBI	CCWGG	4 cut(s)	789, 1299, 1329, 1477
BseDI	CCNNGG	3 cut(s)	201, 788, 1580
BseGI	GGATG	8 cut(s)	526, 727, 779, 1078, 1088, 1291, 1546, 1810
BseJI	GATNNNNATC	1 cut(s)	1385
BseLI	CCNNNNNNNGG	7 cut(s)	88, 139, 162, 294, 295, 789, 1282
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	6 cut(s)	24, 477, 479, 684, 1049, 1902
BseNI	ACTGG	3 cut(s)	531, 936, 1853
BseRI	GAGGAG	4 cut(s)	284, 766, 1643, 1887
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	148, 1153, 1213
BsgI	GTGCAG	3 cut(s)	641, 692, 1380
Bsh1236I	CGCG	3 cut(s)	113, 173, 203
BshFI	GGCC	3 cut(s)	265, 287, 299
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	9 cut(s)	122, 140, 157, 163, 266, 314, 416, 545, 710
BslI	CCNNNNNNNGG	7 cut(s)	88, 139, 162, 294, 295, 789, 1282
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	3 cut(s)	265, 287, 299
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	1021
Bsp120I	GGGCCC	1 cut(s)	297
Bsp1286I	GDGCHC	4 cut(s)	157, 301, 1191, 1430
Bsp13I	TCCGGA	1 cut(s)	709
Bsp1407I	TGTACA	1 cut(s)	1759
Bsp143I	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
BspACI	CCGC	7 cut(s)	111, 146, 201, 203, 419, 1400, 1663
BspANI	GGCC	3 cut(s)	265, 287, 299
BspCNI	CTCAG	6 cut(s)	23, 478, 478, 685, 1048, 1903
BspEI	TCCGGA	1 cut(s)	709
BspFNI	CGCG	3 cut(s)	113, 173, 203
BspLI	GGNNCC	7 cut(s)	144, 161, 298, 299, 300, 1778, 1842
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	4 cut(s)	664, 851, 1402, 1692
BspPI	GGATC	5 cut(s)	247, 555, 678, 1070, 1593
BspQI	GCTCTTC	1 cut(s)	1806
BspT104I	TTCGAA	1 cut(s)	1021
BspT107I	GGYRCC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	944
BsrFI	RCCGGY	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	1759
BsrI	ACTGG	3 cut(s)	531, 936, 1853
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	201, 788, 1580
BssMI	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
BssNI	GRCGYC	3 cut(s)	119, 143, 1462
Bst2UI	CCWGG	4 cut(s)	789, 1299, 1329, 1477
Bst4CI	ACNGT	6 cut(s)	740, 817, 1052, 1138, 1198, 1733
Bst6I	CTCTTC	2 cut(s)	1499, 1806
BstACI	GRCGYC	3 cut(s)	119, 143, 1462
BstAUI	TGTACA	1 cut(s)	1759
BstBI	TTCGAA	1 cut(s)	1021
BstC8I	GCNNGC	4 cut(s)	141, 746, 1251, 1338
BstDEI	CTNAG	9 cut(s)	10, 381, 465, 486, 693, 1035, 1601, 1656, 1911
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	8 cut(s)	526, 727, 779, 1078, 1088, 1291, 1546, 1810
BstFNI	CGCG	3 cut(s)	113, 173, 203
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	3 cut(s)	115, 145, 175
BstKTI	GATC	9 cut(s)	34, 237, 242, 550, 664, 686, 1078, 1588, 1904
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 145
BstNI	CCWGG	4 cut(s)	789, 1299, 1329, 1477
BstSCI	CCNGG	6 cut(s)	155, 414, 787, 1297, 1327, 1475
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	3 cut(s)	113, 173, 203
BstV1I	GCAGC	3 cut(s)	148, 1153, 1213
BstV2I	GAAGAC	3 cut(s)	134, 398, 638
BstX2I	RGATCY	5 cut(s)	31, 239, 547, 683, 1585
BstYI	RGATCY	5 cut(s)	31, 239, 547, 683, 1585
Bsu36I	CCTNAGG	3 cut(s)	486, 693, 1911
BsuRI	GGCC	3 cut(s)	265, 287, 299
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	1429
BtsCI	GGATG	8 cut(s)	526, 727, 779, 1078, 1088, 1291, 1546, 1810
BtsIMutI	CAGTG	4 cut(s)	635, 943, 1057, 1442
BveI	ACCTGC	4 cut(s)	664, 851, 1402, 1692
Cac8I	GCNNGC	4 cut(s)	141, 746, 1251, 1338
CfoI	GCGC	3 cut(s)	115, 145, 175
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	286, 297, 298
Cfr42I	CCGCGG	1 cut(s)	204
CseI	GACGC	3 cut(s)	127, 202, 1451
CsiI	ACCWGGT	1 cut(s)	1475
Csp6I	GTAC	1 cut(s)	1760
CviAII	CATG	5 cut(s)	554, 1178, 1702, 1789, 1905
CviQI	GTAC	1 cut(s)	1760
DdeI	CTNAG	9 cut(s)	10, 381, 465, 486, 693, 1035, 1601, 1656, 1911
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	9 cut(s)	33, 236, 241, 549, 663, 685, 1077, 1587, 1903
DpnII	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
EaeI	YGGCCR	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	1499, 1806
EarI	CTCTTC	2 cut(s)	1499, 1806
Eco24I	GRGCYC	3 cut(s)	157, 301, 1430
Eco31I	GGTCTC	1 cut(s)	8
Eco57I	CTGAAG	4 cut(s)	385, 624, 833, 1539
Eco81I	CCTNAGG	3 cut(s)	486, 693, 1911
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	2 cut(s)	297, 298
EcoRII	CCWGG	4 cut(s)	787, 1297, 1327, 1475
EcoT38I	GRGCYC	3 cut(s)	157, 301, 1430
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	5 cut(s)	557, 1181, 1705, 1792, 1908
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 383, 415, 1551, 1583
FatI	CATG	5 cut(s)	553, 1177, 1701, 1788, 1904
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	7 cut(s)	137, 146, 201, 204, 1167, 1227, 1664
FokI	GGATG	8 cut(s)	533, 714, 766, 1075, 1085, 1298, 1553, 1817
FriOI	GRGCYC	3 cut(s)	157, 301, 1430
Fsp4HI	GCNGC	7 cut(s)	137, 146, 201, 204, 1167, 1227, 1664
FspBI	CTAG	2 cut(s)	1715, 1832
GlaI	GCGC	3 cut(s)	114, 144, 174
GluI	GCNGC	7 cut(s)	137, 146, 201, 204, 1167, 1227, 1664
GsuI	CTGGAG	3 cut(s)	1311, 1332, 1353
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	265, 287, 299
HapII	CCGG	9 cut(s)	122, 140, 157, 163, 266, 314, 416, 545, 710
HgaI	GACGC	3 cut(s)	127, 202, 1451
HhaI	GCGC	3 cut(s)	115, 145, 175
Hin1I	GRCGYC	3 cut(s)	119, 143, 1462
Hin1II	CATG	5 cut(s)	557, 1181, 1705, 1792, 1908
Hin6I	GCGC	3 cut(s)	113, 143, 173
HinP1I	GCGC	3 cut(s)	113, 143, 173
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	2 cut(s)	1334, 1355
HinfI	GANTC	5 cut(s)	274, 364, 1055, 1121, 1705
HpaII	CCGG	9 cut(s)	122, 140, 157, 163, 266, 314, 416, 545, 710
HphI	GGTGA	4 cut(s)	347, 502, 866, 1735
Hpy166II	GTNNAC	4 cut(s)	447, 801, 811, 1762
Hpy8I	GTNNAC	4 cut(s)	447, 801, 811, 1762
Hpy99I	CGWCG	2 cut(s)	121, 218
HpyAV	CCTTC	9 cut(s)	17, 220, 277, 599, 642, 857, 1017, 1078, 1612
HpyCH4III	ACNGT	6 cut(s)	740, 817, 1052, 1138, 1198, 1733
HpyCH4IV	ACGT	1 cut(s)	1921
HpyCH4V	TGCA	6 cut(s)	136, 622, 673, 1253, 1397, 1594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 145
HpyF3I	CTNAG	9 cut(s)	10, 381, 465, 486, 693, 1035, 1601, 1656, 1911
HpySE526I	ACGT	1 cut(s)	1921
Hsp92I	GRCGYC	3 cut(s)	119, 143, 1462
Hsp92II	CATG	5 cut(s)	557, 1181, 1705, 1792, 1908
HspAI	GCGC	3 cut(s)	113, 143, 173
KasI	GGCGCC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	709
KroI	GCCGGC	1 cut(s)	139
KroNI	GCCGGC	1 cut(s)	141
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
LguI	GCTCTTC	1 cut(s)	1806
LmnI	GCTCC	4 cut(s)	229, 1148, 1330, 1753
Lsp1109I	GCAGC	3 cut(s)	148, 1153, 1213
LweI	GCATC	3 cut(s)	1007, 1097, 1556
MabI	ACCWGGT	1 cut(s)	1475
MaeI	CTAG	2 cut(s)	1715, 1832
MaeII	ACGT	1 cut(s)	1921
MaeIII	GTNAC	2 cut(s)	455, 1784
MalI	GATC	9 cut(s)	33, 236, 241, 549, 663, 685, 1077, 1587, 1903
MboI	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	5 cut(s)	31, 239, 547, 683, 1585
MhlI	GDGCHC	4 cut(s)	157, 301, 1191, 1430
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	1064, 1130
MmeI	TCCRAC	1 cut(s)	498
MroI	TCCGGA	1 cut(s)	709
MroNI	GCCGGC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	1839
MseI	TTAA	7 cut(s)	65, 837, 918, 954, 1149, 1698, 1893
MslI	CAYNNNNRTG	1 cut(s)	1499
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	9 cut(s)	122, 140, 157, 163, 266, 314, 416, 545, 710
MspR9I	CCNGG	6 cut(s)	157, 416, 789, 1299, 1329, 1477
MunI	CAATTG	1 cut(s)	346
MvaI	CCWGG	4 cut(s)	789, 1299, 1329, 1477
MvnI	CGCG	3 cut(s)	113, 173, 203
MwoI	GCNNNNNNNGC	2 cut(s)	142, 145
NaeI	GCCGGC	1 cut(s)	141
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	2 cut(s)	157, 416
NdeII	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
NgoMIV	GCCGGC	1 cut(s)	139
NlaIII	CATG	5 cut(s)	557, 1181, 1705, 1792, 1908
NlaIV	GGNNCC	7 cut(s)	144, 161, 298, 299, 300, 1778, 1842
NmuCI	GTSAC	2 cut(s)	455, 1784
NspV	TTCGAA	1 cut(s)	1021
OliI	CACNNNNGTG	1 cut(s)	1499
PaeR7I	CTCGAG	1 cut(s)	150
PaqCI	CACCTGC	1 cut(s)	1402
PciSI	GCTCTTC	1 cut(s)	1806
PdiI	GCCGGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	1839
PfeI	GAWTC	3 cut(s)	274, 364, 1705
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	1327
PkrI	GCNGC	7 cut(s)	138, 147, 202, 205, 1168, 1228, 1665
PleI	GAGTC	2 cut(s)	1063, 1129
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	1063, 1129
PshBI	ATTAAT	1 cut(s)	1893
Psp6I	CCWGG	4 cut(s)	787, 1297, 1327, 1475
PspGI	CCWGG	4 cut(s)	787, 1297, 1327, 1475
PspN4I	GGNNCC	7 cut(s)	144, 161, 298, 299, 300, 1778, 1842
PspOMI	GGGCCC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	286, 297, 298
PspXI	VCTCGAGB	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	5 cut(s)	31, 239, 547, 683, 1585
RsaI	GTAC	1 cut(s)	1761
RsaNI	GTAC	1 cut(s)	1760
RseI	CAYNNNNRTG	1 cut(s)	1499
SacII	CCGCGG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	1806
SaqAI	TTAA	7 cut(s)	65, 837, 918, 954, 1149, 1698, 1893
SatI	GCNGC	7 cut(s)	137, 146, 201, 204, 1167, 1227, 1664
Sau3AI	GATC	9 cut(s)	31, 234, 239, 547, 661, 683, 1075, 1585, 1901
Sau96I	GGNCC	3 cut(s)	286, 297, 298
SchI	GAGTC	2 cut(s)	1064, 1130
ScrFI	CCNGG	6 cut(s)	157, 416, 789, 1299, 1329, 1477
SduI	GDGCHC	4 cut(s)	157, 301, 1191, 1430
SexAI	ACCWGGT	1 cut(s)	1475
SfaNI	GCATC	3 cut(s)	1007, 1097, 1556
SfcI	CTRYAG	1 cut(s)	134
SfoI	GGCGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	150
Sfr303I	CCGCGG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	1021
SgrBI	CCGCGG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	1499
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SsiI	CCGC	7 cut(s)	111, 146, 201, 203, 419, 1400, 1663
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	1715, 1832
StyD4I	CCNGG	6 cut(s)	155, 414, 787, 1297, 1327, 1475
TaaI	ACNGT	6 cut(s)	740, 817, 1052, 1138, 1198, 1733
TaiI	ACGT	1 cut(s)	1924
TaqI	TCGA	5 cut(s)	53, 151, 362, 596, 1021
TatI	WGTACW	1 cut(s)	1759
TauI	GCSGC	4 cut(s)	148, 203, 206, 1666
TfiI	GAWTC	3 cut(s)	274, 364, 1705
Tru1I	TTAA	7 cut(s)	65, 837, 918, 954, 1149, 1698, 1893
Tru9I	TTAA	7 cut(s)	65, 837, 918, 954, 1149, 1698, 1893
TscAI	CASTG	4 cut(s)	642, 943, 1057, 1449
TseFI	GTSAC	2 cut(s)	455, 1784
TseI	GCWGC	3 cut(s)	136, 1166, 1226
Tsp45I	GTSAC	2 cut(s)	455, 1784
TspDTI	ATGAA	8 cut(s)	485, 542, 717, 873, 885, 1539, 1697, 1742
TspGWI	ACGGA	3 cut(s)	647, 1135, 1553
TspRI	CASTG	4 cut(s)	642, 943, 1057, 1449
Van91I	CCANNNNNTGG	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	1893
XapI	RAATTY	7 cut(s)	44, 640, 705, 861, 913, 1487, 1822
XhoI	CTCGAG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	810
XmnI	GAANNNNTTC	1 cut(s)	1839
XspI	CTAG	2 cut(s)	1715, 1832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.