Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Reverse (-)

16471510 .. 16472411

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCAAGTTTTATAAATCTTCACCCAAAAATCAAGTGTTTAACTGATAGGAGGTTTACAATTAGTTACTTGGCTCAGTTGAAGTTTGTTTTACCTGAGGTTATTGAGATTACGAAAGTGCTTGTTAAGGATGGGATAACCAATAATATGAAGCCAGATCTTCATGTCACCATGAATGTTGATGCAGTAGAGAATGACGACAAGTTGAAATATAAAGGTGGTGCGCATATGCATTTGAGGAAAGCCTTCCGCCATCAGCTTAGAGAGATATCAAAATCTCATCCTGAGGGTTATGAAATTCCAAAAGAAACTCTGCCCCAACCATTCAATTGTGCAGAGCAACATATGCATCAAGATATGATTAAGTGTTCCTTATCATCATATCCCGAGGCATTGACTGGTGTACACACAGTTAAGCAACCAGAAGCATTTAAAACCTCATTTCAAGGTGATGCGACTGCAGATGAAACACATTTTAACTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

163

Amino Acids

18.52

Weight (kDa)

7.15

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
Acc16I	TGCGCA	1 cut(s)	225
AciI	CCGC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	82, 208, 328, 446
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	14, 160, 461
AvaI	CYCGRG	1 cut(s)	386
AxyI	CCTNAGG	2 cut(s)	96, 285
BccI	CCATC	2 cut(s)	125, 261
BfmI	CTRYAG	1 cut(s)	459
BglII	AGATCT	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	172, 358, 442
BsaJI	CCNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	2 cut(s)	96, 285
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	136, 280
BseMII	CTCAG	3 cut(s)	87, 89, 276
BseNI	ACTGG	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	250
BspCNI	CTCAG	3 cut(s)	88, 88, 277
BspMAI	CTGCAG	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	75, 96, 260, 285
BstF5I	GGATG	2 cut(s)	136, 280
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu36I	CCTNAGG	2 cut(s)	96, 285
BtsCI	GGATG	2 cut(s)	136, 280
CfoI	GCGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	164, 172
CviJI	RGCY	4 cut(s)	74, 154, 245, 259
CviKI_1	RGCY	4 cut(s)	74, 154, 245, 259
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	4 cut(s)	75, 96, 260, 285
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraI	TTTAAA	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	270
Eco81I	CCTNAGG	2 cut(s)	96, 285
Eco88I	CYCGRG	1 cut(s)	386
EcoRV	GATATC	1 cut(s)	270
EcoT22I	ATGCAT	2 cut(s)	234, 351
FaeI	CATG	2 cut(s)	167, 175
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	2 cut(s)	163, 171
FauNDI	CATATG	2 cut(s)	228, 345
FokI	GGATG	2 cut(s)	143, 267
FspAI	RTGCGCAY	1 cut(s)	225
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	167, 175
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HphI	GGTGA	3 cut(s)	14, 160, 461
Hpy166II	GTNNAC	3 cut(s)	57, 404, 406
Hpy188I	TCNGA	1 cut(s)	488
Hpy188III	TCNNGA	3 cut(s)	284, 353, 386
Hpy8I	GTNNAC	3 cut(s)	57, 404, 406
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	185, 232, 335, 349, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	4 cut(s)	75, 96, 260, 285
Hsp92II	CATG	2 cut(s)	167, 175
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	108, 168, 297, 384, 435
LweI	GCATC	3 cut(s)	172, 358, 442
MaeIII	GTNAC	2 cut(s)	65, 166
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	11, 152
MfeI	CAATTG	1 cut(s)	328
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	3 cut(s)	60, 297, 328
MnlI	CCTC	6 cut(s)	45, 91, 231, 280, 382, 448
Mph1103I	ATGCAT	2 cut(s)	234, 351
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	6 cut(s)	41, 126, 363, 414, 432, 477
MunI	CAATTG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeI	CATATG	2 cut(s)	228, 345
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	167, 175
NmuCI	GTSAC	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	225
NsiI	ATGCAT	2 cut(s)	234, 351
PdmI	GAANNNNTTC	1 cut(s)	245
PsiI	TTATAA	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	6 cut(s)	41, 126, 363, 414, 432, 477
Sau3AI	GATC	1 cut(s)	157
SetI	ASST	7 cut(s)	56, 97, 102, 220, 261, 440, 451
SfaNI	GCATC	3 cut(s)	172, 358, 442
SfcI	CTRYAG	1 cut(s)	459
Sse9I	AATT	3 cut(s)	60, 297, 328
SsiI	CCGC	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	412
TasI	AATT	3 cut(s)	60, 297, 328
TatI	WGTACW	1 cut(s)	403
Tru1I	TTAA	6 cut(s)	41, 126, 363, 414, 432, 477
Tru9I	TTAA	6 cut(s)	41, 126, 363, 414, 432, 477
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	5 cut(s)	152, 164, 188, 309, 480
XapI	RAATTY	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	245
Zsp2I	ATGCAT	2 cut(s)	234, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.