Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Forward (+)

32006286 .. 32008813

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1191600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGGTTTACATATGGTCACTTAGATCAGCTGAGTTTGTTATGCCCGAGCTGATTGAGAGAACCAGTTGTCTGAAGCCGGATCTTCTTGTCACGATCAATGCTGATGCATTGGACGGCGATGGCAAGTCAAAACCCGTAGGTGGTGGGAGTATGCATTTGAGGAAGGCATTTCACAAGCAGCTTGCTGATCTTTCGAAATCCCATCCTGAGCCATTTGGTCTTACGAAGCAACATATGCGATCAGATACGGACAAGCTTCCATTGTCATCATCTCAGGGTGATGAAATTTCAGAACCAAAGCTTGATACCGCTTGTGCTTCATTGCGTGGCCAAGTGCCTGTAACTCCAACTGAAAGCATAGACGCTGTTGAAAATGATGATGATTTGCCCACAAAAAGTGCTAGCATTGAGTCGACTCCAACGAAGCTTGCTTCAACTCCAGCCAGGTTGAGGGCTGAAACGCCTGCATTGCAGCCTCCAAAGCGATGTTACATGAGCCCAGATGATAATGCTACTAGCTCACCGAACAAGTTGGCTATGCGTCCTCCAAGCAACAGGTCGTTGAAATTTGACACGCCCGTGAAGAATAAAAAAGTTGAGGATGAAGTTCCTGATAGGAGTGGCGCATCAAACGATAGTGACATTCATGATATTCTTCCTGCGGATCTTTTGCAGTCGCTTAGAGAGAAGGAGAAAAAGGCAATAGAGGAGCGAGATCCGGCCATCTCCCAAGCAAAAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

250

Amino Acids

27.33

Weight (kDa)

5.82

Isoelectric Point (pI)

74.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	3 cut(s)	312, 665, 745
AclWI	GGATC	3 cut(s)	90, 675, 713
AcoI	YGGCCR	2 cut(s)	331, 723
AcsI	RAATTY	2 cut(s)	288, 569
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	143, 453
AgsI	TTSAA	3 cut(s)	374, 438, 568
AjnI	CCWGG	1 cut(s)	446
AleI	CACNNNNGTG	1 cut(s)	581
AluBI	AGCT	7 cut(s)	32, 52, 184, 259, 304, 430, 522
AluI	AGCT	7 cut(s)	32, 52, 184, 259, 304, 430, 522
AlwI	GGATC	3 cut(s)	90, 675, 713
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	331, 723
ApeKI	GCWGC	2 cut(s)	181, 475
ApoI	RAATTY	2 cut(s)	288, 569
AspLEI	GCGC	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	293, 516
AsuII	TTCGAA	1 cut(s)	197
AsuNHI	GCTAGC	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	193, 487
BccI	CCATC	3 cut(s)	116, 213, 734
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	448
BfaI	CTAG	2 cut(s)	405, 519
BisI	GCNGC	2 cut(s)	182, 476
BlsI	GCNGC	2 cut(s)	183, 477
Bme1390I	CCNGG	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	2 cut(s)	97, 638
BmtI	GCTAGC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 453
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	323, 470
BseBI	CCWGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	205, 610
BseLI	CCNNNNNNNGG	2 cut(s)	143, 453
BseMI	GCAATG	2 cut(s)	323, 470
BseMII	CTCAG	3 cut(s)	24, 201, 290
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	725
BseXI	GCAGC	2 cut(s)	193, 487
BshFI	GGCC	2 cut(s)	333, 725
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	80, 722
BslI	CCNNNNNNNGG	2 cut(s)	143, 453
BsnI	GGCC	2 cut(s)	333, 725
BsoBI	CYCGRG	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
BspACI	CCGC	3 cut(s)	312, 665, 745
BspANI	GGCC	2 cut(s)	333, 725
BspCNI	CTCAG	3 cut(s)	25, 202, 289
BspHI	TCATGA	1 cut(s)	649
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	3 cut(s)	90, 675, 713
BspT104I	TTCGAA	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	323, 470
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
Bst2UI	CCWGG	1 cut(s)	448
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	186, 406, 432, 468
BstDEI	CTNAG	5 cut(s)	23, 33, 210, 276, 683
BstF5I	GGATG	2 cut(s)	205, 610
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	7 cut(s)	29, 85, 99, 193, 245, 670, 721
BstMBI	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 472, 484
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	193, 487
BstX2I	RGATCY	3 cut(s)	82, 667, 718
BstYI	RGATCY	3 cut(s)	82, 667, 718
BsuRI	GGCC	2 cut(s)	333, 725
BtgZI	GCGATG	2 cut(s)	135, 502
BtsCI	GGATG	2 cut(s)	205, 610
Cac8I	GCNNGC	4 cut(s)	186, 406, 432, 468
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	1 cut(s)	629
CseI	GACGC	2 cut(s)	374, 533
CviAII	CATG	2 cut(s)	496, 650
DdeI	CTNAG	5 cut(s)	23, 33, 210, 276, 683
DpnI	GATC	7 cut(s)	28, 84, 98, 192, 244, 669, 720
DpnII	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
EaeI	YGGCCR	2 cut(s)	331, 723
Eco24I	GRGCYC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	446
EcoT22I	ATGCAT	2 cut(s)	112, 159
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	2 cut(s)	499, 653
FatI	CATG	2 cut(s)	495, 649
FauNDI	CATATG	2 cut(s)	14, 237
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	182, 476
FokI	GGATG	2 cut(s)	192, 617
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	2 cut(s)	182, 476
FspBI	CTAG	2 cut(s)	405, 519
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	2 cut(s)	182, 476
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	333, 725
HapII	CCGG	2 cut(s)	80, 722
HgaI	GACGC	2 cut(s)	374, 533
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	2 cut(s)	499, 653
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	3 cut(s)	257, 302, 428
HinfI	GANTC	2 cut(s)	413, 418
HpaII	CCGG	2 cut(s)	80, 722
HphI	GGTGA	2 cut(s)	293, 516
Hpy166II	GTNNAC	2 cut(s)	10, 417
Hpy188I	TCNGA	3 cut(s)	75, 247, 295
Hpy188III	TCNNGA	4 cut(s)	94, 209, 614, 650
Hpy8I	GTNNAC	2 cut(s)	10, 417
HpyAV	CCTTC	2 cut(s)	160, 685
HpyCH4V	TGCA	5 cut(s)	110, 157, 470, 475, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 472, 484
HpyF3I	CTNAG	5 cut(s)	23, 33, 210, 276, 683
Hsp92II	CATG	2 cut(s)	499, 653
HspAI	GCGC	1 cut(s)	627
Kzo9I	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	2 cut(s)	193, 487
LweI	GCATC	2 cut(s)	97, 638
MaeI	CTAG	2 cut(s)	405, 519
MaeIII	GTNAC	5 cut(s)	18, 91, 343, 491, 641
MalI	GATC	7 cut(s)	28, 84, 98, 192, 244, 669, 720
MboI	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
MboII	GAAGA	3 cut(s)	77, 598, 650
MflI	RGATCY	3 cut(s)	82, 667, 718
MhlI	GDGCHC	1 cut(s)	503
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	2 cut(s)	288, 569
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	412, 422
MmeI	TCCRAC	2 cut(s)	374, 446
MnlI	CCTC	6 cut(s)	156, 447, 489, 558, 595, 703
Mox20I	TGGCCA	1 cut(s)	333
Mph1103I	ATGCAT	2 cut(s)	112, 159
MscI	TGGCCA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	581
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	80, 722
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	238, 472, 484
NdeI	CATATG	2 cut(s)	14, 237
NdeII	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	499, 653
NmuCI	GTSAC	3 cut(s)	18, 91, 641
NsiI	ATGCAT	2 cut(s)	112, 159
NspV	TTCGAA	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	183, 477
PleI	GAGTC	2 cut(s)	412, 421
PpsI	GAGTC	2 cut(s)	412, 421
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PsuI	RGATCY	3 cut(s)	82, 667, 718
PvuII	CAGCTG	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	581
SalI	GTCGAC	1 cut(s)	415
SatI	GCNGC	2 cut(s)	182, 476
Sau3AI	GATC	7 cut(s)	26, 82, 96, 190, 242, 667, 718
SchI	GAGTC	2 cut(s)	412, 422
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	2 cut(s)	97, 638
SfuI	TTCGAA	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	288, 569
SsiI	CCGC	3 cut(s)	312, 665, 745
SspMI	CTAG	2 cut(s)	405, 519
StyD4I	CCNGG	1 cut(s)	446
TaqI	TCGA	2 cut(s)	197, 416
TasI	AATT	2 cut(s)	288, 569
TseFI	GTSAC	3 cut(s)	18, 91, 641
TseI	GCWGC	2 cut(s)	181, 475
Tsp45I	GTSAC	3 cut(s)	18, 91, 641
TspDTI	ATGAA	4 cut(s)	300, 312, 621, 638
TspGWI	ACGGA	1 cut(s)	266
XapI	RAATTY	2 cut(s)	288, 569
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	2 cut(s)	405, 519
Zsp2I	ATGCAT	2 cut(s)	112, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.