Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Reverse (-)

23746886 .. 23747601

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1150900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCCAAGTTTTACCAATCTTCGCCCAAAAATCGAGTGTTTAACTGATAGGAGGTTTACAATTAGTCACTTGGCTCAGCTGAAGTTTGTTTTACCTAAGGTTATTGAGATTACAAAAGTGCTTGTTAAGGATAGGATAACCAATAATATGAAGTCGGATCTTCGTGTCACCATGAATGTTGATGCAGTAGAGAATGACAACAAGTCAAAATATGAAGGTGGTGGGCATATGCATTTAAGGAGAGCCTTTCGCCATCAGCTTGGAGAGATTTCAAAATCTCAACCTGAGTCTGAAAATGGGTTTTATGCTTTCAAGGTTATGAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

110

Amino Acids

12.67

Weight (kDa)

9.81

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	3 - 92	3.1e-06	DNA replication factor CDT1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	273, 313
AhdI	GACNNNNNGTC	1 cut(s)	202
AluBI	AGCT	2 cut(s)	79, 259
AluI	AGCT	2 cut(s)	79, 259
AlwI	GGATC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	96
BccI	CCATC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	75
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmsI	GCATC	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	89, 276
Bsp143I	GATC	1 cut(s)	157
Bsp1720I	GCTNAGC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	88, 277
BspPI	GGATC	1 cut(s)	165
BssMI	GATC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	75, 96, 285
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	96
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	74, 79, 245, 259
CviKI_1	RGCY	4 cut(s)	74, 79, 245, 259
DdeI	CTNAG	3 cut(s)	75, 96, 285
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1105I	GACNNNNNGTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	1 cut(s)	175
FaiI	YATR	7 cut(s)	149, 173, 213, 228, 230, 306, 320
FatI	CATG	1 cut(s)	171
FauNDI	CATATG	1 cut(s)	228
FspBI	CTAG	1 cut(s)	328
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	157, 292
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	185, 232
HpyF3I	CTNAG	3 cut(s)	75, 96, 285
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	1 cut(s)	297
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	65, 166
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	11, 152
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	60, 323
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	234
MseI	TTAA	3 cut(s)	41, 126, 236
MspA1I	CMGCKG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	65, 166
NsiI	ATGCAT	1 cut(s)	234
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	41, 126, 236
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	296
SetI	ASST	8 cut(s)	56, 81, 97, 102, 220, 261, 286, 318
SfaNI	GCATC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	60, 323
SspMI	CTAG	1 cut(s)	328
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	60, 323
Tru1I	TTAA	3 cut(s)	41, 126, 236
Tru9I	TTAA	3 cut(s)	41, 126, 236
TseFI	GTSAC	2 cut(s)	65, 166
Tsp45I	GTSAC	2 cut(s)	65, 166
TspDTI	ATGAA	3 cut(s)	164, 188, 228
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.