Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Forward (+)

27252831 .. 27255882

Gene Structure 3052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1178300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGAGTTCCTCGCAAACCCTCAGATCCAGGGCACCCAGAAGCCGGGAAAAGAAAGCCTTAAACCCAAATCCCCCAAAAGTCTCAGGCGACGAGGCACTGAGCACCCAGACCCCTCAGAAGCCCGAAACACTCACCCGCCGTGCTCGAAACGCCAACTTTGCGCTCTCCATAGGAGACATCAGAAGGGCGGCCGCCAAAAGCGTCGGCGAGTCGACCCAGAAGCAACGGATGGACCAGATCGATCCTTGGGGGGAGGAAACCCCGAAGAAGACTCGTGTCAGCCGCCAGGAGAAGCTACCCGAAAAATTTGAGATCTTGGGTGAGTTTTTCAATGGCTTGGACACTTCGATTCGGTTGTTGCGATTGAGGGGAGTACAGCCCAGTTTCAGCAACATTTGCCCCCAAATCGAGTGTTTAACGGATAGGAGGTTTACACACGGTCACTTGGCTCAGCTGAAGTTTGTTTTACCTGAGGCGATTGAGATAAAGAAAGTGCTTATTAAGGATGAGAGGACCAGTTGTCTGAAGCCGGATCTTCATGTCACCATCAATGCTGATGCACTGGAGAGCGATGGCAAGTCGAAACCTGAAGGTGGAGGAGGGAGTATGCATTTGAGGAAGGCATTTCGTAAACGGCTTGCTGATCTTTCAAAATCCCATCCTGAGGATTATGACATTCCAGAAGAAATTCTCCCCCAGCCATTTGGTCGTACGAAGCAAGATATGCTATCAGACACGGTCAAGCTTCCCTTGTCATCATCTCTTGGTGAAGTATTGACTGATGCAAAAAGCTGCCTTCAGGGTGATGATATTTCAGAACCAAAGCTCGATACTGCTTGTGCTTCATCGTGTGGCCAAGTGCCTGTAACTCCAACTAAAGCCATGGACGCCGTAGAAAATCATGATGATTTGCCCACAAAAAGTGCTAGCATTCAATCGACTCCAGCAAAGCTTGCTTCAACTCCAGCCAGGTTGGGGACTGAAACGCCTGCATTGCAGCCTCCAAGGCGATGTCATATGAGCCCAGATCATAATTCTACTAGCTCACCGAATAAGTTGGTTAGGCGTCCTCCACGCACCAGGTCCTTGAAATTCGACACGCCTGTGAAGAATAAAAATGTTGAGGATGAATTTCCTGATAGGAGTGACGGATCAAACGATAATGACATTCACGATATTCTTCCAGACGATCTTTTGCAATCGCTTAGAGAGAAGGAGAAAAAGGCAATAGAGGAGCGAGATCCGGCCATCTCCCAAGCAAAGAGGCGGCAACAGATGATTTCCAGCCTACCTAAGCTCTTCAACTCGATTCATTTTCTACTACAGTCCATGAACCGTTCTGTTATCACAAAAGAGGAGCTTGTGCACAAGATCATTTGGACCAATTTCGATATTGTTGACAGAAAGGAAGTTCAAGAGCAGCTAAACTTGTTGCTAGAGCTGGTTCCCGATTGGATTTCTGAGAAGAAGATAGCATCTGAAGCTGATTTGCTAATGATCCACATTAATAAGATGTCGAATCCTGAGTCAATACGTGCACGGCTTGAAGTGGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

520

Amino Acids

58.23

Weight (kDa)

8.77

Isoelectric Point (pI)

68.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	99 - 218	3.7e-11	DNA replication factor CDT1 like
CDT1_C	PF16679	397 - 491	2e-21	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	5 cut(s)	136, 188, 192, 283, 1267
AclWI	GGATC	6 cut(s)	18, 236, 540, 1159, 1235, 1492
AcoI	YGGCCR	3 cut(s)	189, 853, 1245
AcsI	RAATTY	4 cut(s)	305, 687, 1091, 1130
AcuI	CTGAAG	5 cut(s)	476, 545, 609, 782, 1500
AcyI	GRCGYC	2 cut(s)	888, 1066
AfaI	GTAC	2 cut(s)	375, 712
AfiI	CCNNNNNNNGG	4 cut(s)	42, 593, 664, 975
AgsI	TTSAA	8 cut(s)	331, 651, 935, 960, 1090, 1303, 1415, 1547
AhdI	GACNNNNNGTC	1 cut(s)	519
AjnI	CCWGG	4 cut(s)	26, 285, 968, 1079
AleI	CACNNNNGTG	1 cut(s)	1103
Alw21I	GWGCWC	4 cut(s)	104, 145, 1368, 1540
Alw26I	GTCTC	2 cut(s)	85, 168
Alw44I	GTGCAC	2 cut(s)	1364, 1536
AlwI	GGATC	6 cut(s)	18, 236, 540, 1159, 1235, 1492
AoxI	GGCC	3 cut(s)	189, 853, 1245
ApaLI	GTGCAC	2 cut(s)	1364, 1536
ApeKI	GCWGC	3 cut(s)	792, 997, 1420
ApoI	RAATTY	4 cut(s)	305, 687, 1091, 1130
ArsI	GACNNNNNNTTYG	2 cut(s)	1511, 1543
AseI	ATTAAT	1 cut(s)	1506
Asp700I	GAANNNNTTC	1 cut(s)	687
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	4 cut(s)	232, 513, 1083, 1380
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	6 cut(s)	124, 332, 535, 779, 815, 1038
AsuNHI	GCTAGC	1 cut(s)	926
AvaII	GGWCC	4 cut(s)	232, 513, 1083, 1380
AxyI	CCTNAGG	2 cut(s)	471, 663
BaeGI	GKGCMC	3 cut(s)	34, 1368, 1540
BalI	TGGCCA	1 cut(s)	855
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	1025
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	4 cut(s)	104, 145, 1368, 1540
BbvI	GCAGC	3 cut(s)	779, 1009, 1432
BccI	CCATC	5 cut(s)	223, 554, 566, 666, 1256
BceAI	ACGGC	4 cut(s)	123, 650, 875, 1556
BciT130I	CCWGG	4 cut(s)	28, 287, 970, 1081
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	85, 168
BfaI	CTAG	3 cut(s)	927, 1041, 1436
BfmI	CTRYAG	1 cut(s)	1322
BglI	GCCNNNNNGGC	1 cut(s)	1006
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	7 cut(s)	189, 192, 283, 793, 998, 1268, 1421
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	7 cut(s)	190, 193, 284, 794, 999, 1269, 1422
Bme1390I	CCNGG	5 cut(s)	28, 44, 287, 970, 1081
Bme18I	GGWCC	4 cut(s)	232, 513, 1083, 1380
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmgT120I	GGNCC	4 cut(s)	232, 513, 1083, 1380
BmiI	GGNNCC	2 cut(s)	33, 1446
BmrFI	CCNGG	5 cut(s)	28, 44, 287, 970, 1081
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	547, 772, 1484
BmtI	GCTAGC	1 cut(s)	930
BmuI	ACTGGG	1 cut(s)	375
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	3 cut(s)	584, 927, 948
Bpu10I	CCTNAGC	1 cut(s)	1293
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	1535
BsaHI	GRCGYC	2 cut(s)	888, 1066
BsaJI	CCNNGG	4 cut(s)	27, 245, 882, 1004
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 593, 664, 975
Bse1I	ACTGG	3 cut(s)	381, 516, 567
Bse21I	CCTNAGG	2 cut(s)	471, 663
Bse3DI	GCAATG	1 cut(s)	992
BseBI	CCWGG	4 cut(s)	28, 287, 970, 1081
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	4 cut(s)	27, 245, 882, 1004
BseGI	GGATG	4 cut(s)	234, 511, 658, 1132
BseLI	CCNNNNNNNGG	4 cut(s)	42, 593, 664, 975
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	9 cut(s)	34, 89, 96, 128, 462, 464, 654, 1452, 1515
BseNI	ACTGG	3 cut(s)	381, 516, 567
BseRI	GAGGAG	3 cut(s)	612, 1247, 1370
BseSI	GKGCMC	3 cut(s)	34, 1368, 1540
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	779, 1009, 1432
BseYI	CCCAGC	1 cut(s)	696
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	191, 855, 1247
BshNI	GGYRCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	4 cut(s)	104, 145, 1368, 1540
BsiSI	CCGG	3 cut(s)	43, 530, 1244
BsiWI	CGTACG	1 cut(s)	710
BslFI	GGGAC	1 cut(s)	991
BslI	CCNNNNNNNGG	4 cut(s)	42, 593, 664, 975
BsmAI	GTCTC	2 cut(s)	85, 168
BsmFI	GGGAC	1 cut(s)	991
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	3 cut(s)	191, 855, 1247
Bsp1286I	GDGCHC	6 cut(s)	34, 104, 145, 1025, 1368, 1540
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	5 cut(s)	136, 188, 192, 283, 1267
BspANI	GGCC	3 cut(s)	191, 855, 1247
BspCNI	CTCAG	9 cut(s)	33, 90, 95, 127, 463, 463, 655, 1453, 1516
BspDI	ATCGAT	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	2 cut(s)	33, 1446
BspOI	GCTAGC	1 cut(s)	930
BspPI	GGATC	6 cut(s)	18, 236, 540, 1159, 1235, 1492
BspQI	GCTCTTC	1 cut(s)	1304
BspT107I	GGYRCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	992
BsrI	ACTGG	3 cut(s)	381, 516, 567
BssECI	CCNNGG	4 cut(s)	27, 245, 882, 1004
BssNI	GRCGYC	2 cut(s)	888, 1066
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	3 cut(s)	245, 882, 1004
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	4 cut(s)	28, 287, 970, 1081
Bst4CI	ACNGT	4 cut(s)	440, 739, 1326, 1337
Bst6I	CTCTTC	1 cut(s)	1304
BstACI	GRCGYC	2 cut(s)	888, 1066
BstAPI	GCANNNNNTGC	3 cut(s)	396, 724, 953
BstBAI	YACGTR	1 cut(s)	1535
BstC8I	GCNNGC	4 cut(s)	639, 928, 954, 990
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	4 cut(s)	234, 511, 658, 1132
BstHHI	GCGC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	85, 168
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	9 cut(s)	149, 158, 396, 724, 887, 953, 994, 1006, 1481
BstNI	CCWGG	4 cut(s)	28, 287, 970, 1081
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	5 cut(s)	26, 42, 285, 968, 1079
BstSFI	CTRYAG	1 cut(s)	1322
BstSLI	GKGCMC	3 cut(s)	34, 1368, 1540
BstV1I	GCAGC	3 cut(s)	779, 1009, 1432
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	4 cut(s)	23, 312, 532, 1240
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	4 cut(s)	23, 312, 532, 1240
BstZI	CGGCCG	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	240
Bsu36I	CCTNAGG	2 cut(s)	471, 663
BsuRI	GGCC	3 cut(s)	191, 855, 1247
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	882
BtgZI	GCGATG	2 cut(s)	585, 1024
BtsCI	GGATG	4 cut(s)	234, 511, 658, 1132
BtsIMutI	CAGTG	2 cut(s)	95, 560
Cac8I	GCNNGC	4 cut(s)	639, 928, 954, 990
CciI	TCATGA	1 cut(s)	901
CciNI	GCGGCCGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	4 cut(s)	232, 513, 1083, 1380
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	3 cut(s)	190, 896, 1055
CsiI	ACCWGGT	1 cut(s)	1079
Csp6I	GTAC	2 cut(s)	374, 711
CviAII	CATG	4 cut(s)	539, 883, 902, 1330
CviQI	GTAC	2 cut(s)	374, 711
DriI	GACNNNNNGTC	1 cut(s)	519
EaeI	YGGCCR	3 cut(s)	189, 853, 1245
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	1304
Eam1105I	GACNNNNNGTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	1304
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	3 cut(s)	245, 882, 1004
Eco24I	GRGCYC	1 cut(s)	1025
Eco47I	GGWCC	4 cut(s)	232, 513, 1083, 1380
Eco52I	CGGCCG	1 cut(s)	189
Eco57I	CTGAAG	5 cut(s)	476, 545, 609, 782, 1500
Eco81I	CCTNAGG	2 cut(s)	471, 663
EcoO109I	RGGNCCY	1 cut(s)	1083
EcoRII	CCWGG	4 cut(s)	26, 285, 968, 1079
EcoT14I	CCWWGG	3 cut(s)	245, 882, 1004
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	1025
ErhI	CCWWGG	3 cut(s)	245, 882, 1004
FaeI	CATG	4 cut(s)	542, 886, 905, 1333
FalI	AAGNNNNNCTT	6 cut(s)	41, 73, 734, 766, 1344, 1376
FaqI	GGGAC	1 cut(s)	991
FatI	CATG	4 cut(s)	538, 882, 901, 1329
FauI	CCCGC	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	1017
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	7 cut(s)	189, 192, 283, 793, 998, 1268, 1421
FokI	GGATG	4 cut(s)	241, 518, 645, 1139
FriOI	GRGCYC	1 cut(s)	1025
Fsp4HI	GCNGC	7 cut(s)	189, 192, 283, 793, 998, 1268, 1421
FspBI	CTAG	3 cut(s)	927, 1041, 1436
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	7 cut(s)	189, 192, 283, 793, 998, 1268, 1421
GsaI	CCCAGC	1 cut(s)	700
GsuI	CTGGAG	3 cut(s)	584, 927, 948
HaeIII	GGCC	3 cut(s)	191, 855, 1247
HapII	CCGG	3 cut(s)	43, 530, 1244
HgaI	GACGC	3 cut(s)	190, 896, 1055
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	2 cut(s)	888, 1066
Hin1II	CATG	4 cut(s)	542, 886, 905, 1333
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	213, 1399
HindII	GTYRAC	2 cut(s)	213, 1399
HindIII	AAGCTT	2 cut(s)	743, 950
HinfI	GANTC	7 cut(s)	209, 271, 349, 940, 1309, 1519, 1526
HpaII	CCGG	3 cut(s)	43, 530, 1244
HphI	GGTGA	6 cut(s)	124, 332, 535, 779, 815, 1038
Hpy166II	GTNNAC	6 cut(s)	213, 432, 632, 1366, 1399, 1538
Hpy188I	TCNGA	8 cut(s)	23, 117, 182, 525, 733, 817, 1462, 1480
Hpy188III	TCNNGA	9 cut(s)	662, 680, 902, 1136, 1172, 1184, 1415, 1448, 1523
Hpy8I	GTNNAC	6 cut(s)	213, 432, 632, 1366, 1399, 1538
Hpy99I	CGWCG	2 cut(s)	92, 206
HpyAV	CCTTC	5 cut(s)	177, 584, 613, 806, 1207
HpyCH4III	ACNGT	4 cut(s)	440, 739, 1326, 1337
HpyCH4IV	ACGT	1 cut(s)	1534
HpyCH4V	TGCA	8 cut(s)	560, 610, 785, 992, 997, 1198, 1366, 1538
HpyF10VI	GCNNNNNNNGC	9 cut(s)	149, 158, 396, 724, 887, 953, 994, 1006, 1481
HpySE526I	ACGT	1 cut(s)	1534
Hsp92I	GRCGYC	2 cut(s)	888, 1066
Hsp92II	CATG	4 cut(s)	542, 886, 905, 1333
HspAI	GCGC	1 cut(s)	161
LguI	GCTCTTC	1 cut(s)	1304
LmnI	GCTCC	2 cut(s)	1234, 1357
Lsp1109I	GCAGC	3 cut(s)	779, 1009, 1432
LweI	GCATC	3 cut(s)	547, 772, 1484
MabI	ACCWGGT	1 cut(s)	1079
MaeI	CTAG	3 cut(s)	927, 1041, 1436
MaeII	ACGT	1 cut(s)	1534
MaeIII	GTNAC	4 cut(s)	440, 541, 865, 1145
MboII	GAAGA	9 cut(s)	277, 280, 527, 695, 1120, 1172, 1291, 1477, 1480
MflI	RGATCY	4 cut(s)	23, 312, 532, 1240
MhlI	GDGCHC	6 cut(s)	34, 104, 145, 1025, 1368, 1540
MlsI	TGGCCA	1 cut(s)	855
MluCI	AATT	6 cut(s)	305, 687, 1033, 1091, 1130, 1384
MluNI	TGGCCA	1 cut(s)	855
MlyI	GAGTC	4 cut(s)	218, 265, 934, 1535
MmeI	TCCRAC	1 cut(s)	896
Mox20I	TGGCCA	1 cut(s)	855
Mph1103I	ATGCAT	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	855
MseI	TTAA	4 cut(s)	59, 416, 501, 1506
MslI	CAYNNNNRTG	1 cut(s)	1103
Msp20I	TGGCCA	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	3 cut(s)	43, 530, 1244
MspR9I	CCNGG	5 cut(s)	28, 44, 287, 970, 1081
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	4 cut(s)	28, 287, 970, 1081
MwoI	GCNNNNNNNGC	9 cut(s)	149, 158, 396, 724, 887, 953, 994, 1006, 1481
NciI	CCSGG	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	882
NdeI	CATATG	1 cut(s)	1017
NheI	GCTAGC	1 cut(s)	926
NlaIII	CATG	4 cut(s)	542, 886, 905, 1333
NlaIV	GGNNCC	2 cut(s)	33, 1446
NmuCI	GTSAC	3 cut(s)	440, 541, 1145
NotI	GCGGCCGC	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	901
PciSI	GCTCTTC	1 cut(s)	1304
PcsI	WCGNNNNNNNCGW	2 cut(s)	358, 1155
PctI	GAATGC	1 cut(s)	930
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	349, 1309, 1519
Pfl23II	CGTACG	1 cut(s)	710
PflFI	GACNNNGTC	1 cut(s)	737
PkrI	GCNGC	7 cut(s)	190, 193, 284, 794, 999, 1269, 1422
PleI	GAGTC	4 cut(s)	217, 265, 934, 1534
PpsI	GAGTC	4 cut(s)	217, 265, 934, 1534
Ppu21I	YACGTR	1 cut(s)	1535
PpuMI	RGGWCCY	1 cut(s)	1083
PshAI	GACNNNNGTC	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	1506
Psp5II	RGGWCCY	1 cut(s)	1083
Psp6I	CCWGG	4 cut(s)	26, 285, 968, 1079
PspFI	CCCAGC	1 cut(s)	696
PspGI	CCWGG	4 cut(s)	26, 285, 968, 1079
PspLI	CGTACG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	33, 1446
PspPI	GGNCC	4 cut(s)	232, 513, 1083, 1380
PspPPI	RGGWCCY	1 cut(s)	1083
PsuI	RGATCY	4 cut(s)	23, 312, 532, 1240
PsyI	GACNNNGTC	1 cut(s)	737
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	2 cut(s)	375, 712
RsaNI	GTAC	2 cut(s)	374, 711
RseI	CAYNNNNRTG	1 cut(s)	1103
SalI	GTCGAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	1304
SaqAI	TTAA	4 cut(s)	59, 416, 501, 1506
SatI	GCNGC	7 cut(s)	189, 192, 283, 793, 998, 1268, 1421
Sau96I	GGNCC	4 cut(s)	232, 513, 1083, 1380
SchI	GAGTC	4 cut(s)	218, 265, 934, 1535
ScrFI	CCNGG	5 cut(s)	28, 44, 287, 970, 1081
SduI	GDGCHC	6 cut(s)	34, 104, 145, 1025, 1368, 1540
SexAI	ACCWGGT	1 cut(s)	1079
SfaNI	GCATC	3 cut(s)	547, 772, 1484
SfcI	CTRYAG	1 cut(s)	1322
SinI	GGWCC	4 cut(s)	232, 513, 1083, 1380
SmiMI	CAYNNNNRTG	1 cut(s)	1103
Sse9I	AATT	6 cut(s)	305, 687, 1033, 1091, 1130, 1384
SsiI	CCGC	5 cut(s)	136, 188, 192, 283, 1267
SspMI	CTAG	3 cut(s)	927, 1041, 1436
StyD4I	CCNGG	5 cut(s)	26, 42, 285, 968, 1079
StyI	CCWWGG	3 cut(s)	245, 882, 1004
TaaI	ACNGT	4 cut(s)	440, 739, 1326, 1337
TaiI	ACGT	1 cut(s)	1537
TasI	AATT	6 cut(s)	305, 687, 1033, 1091, 1130, 1384
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	4 cut(s)	191, 194, 285, 1270
TfiI	GAWTC	3 cut(s)	349, 1309, 1519
Tru1I	TTAA	4 cut(s)	59, 416, 501, 1506
Tru9I	TTAA	4 cut(s)	59, 416, 501, 1506
TscAI	CASTG	2 cut(s)	102, 567
TseFI	GTSAC	3 cut(s)	440, 541, 1145
TseI	GCWGC	3 cut(s)	792, 997, 1420
Tsp45I	GTSAC	3 cut(s)	440, 541, 1145
TspDTI	ATGAA	5 cut(s)	527, 834, 1143, 1301, 1346
TspGWI	ACGGA	3 cut(s)	241, 434, 1164
TspRI	CASTG	2 cut(s)	102, 567
Tth111I	GACNNNGTC	1 cut(s)	737
VneI	GTGCAC	2 cut(s)	1364, 1536
VpaK11BI	GGWCC	4 cut(s)	232, 513, 1083, 1380
VspI	ATTAAT	1 cut(s)	1506
XapI	RAATTY	4 cut(s)	305, 687, 1091, 1130
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	3 cut(s)	927, 1041, 1436
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.