Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Reverse (-)

16477083 .. 16478023

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAATGTTGATGCAGTGGAGAATGATGACAAGTTGAAATATGAAGGTGGTGGGCATATGCATTTGAGGAGAGCCTTCCACCATCGACTTGGAGAGATATCAAAATCCTATCCTGAGGGTAATGAAATTCCAGAAGAAACTCTGCCCCAACCATTCAATTGTGTAGAGCAACATATGCATTCAGATACAATTAAGTGTTTCTTATCATCATTTCCCAATGCATTGACTGGTGTACACATAGTTGAGCAACCAGAAGCATTTAAAACTTCCCTTCAAGGCGATGCGACTGCAGATGAAACACATTTAACTTCATCTGAACAATCAAATGAAGATTTGAATTCAAACATAAACGAAATTCCTGACCCATCATTGCCCATTGAGACATCATTTGAAGCACCAATAGAGCAGTTACTAGCCATAACAACTCATCTTCCTCAATCTTTTCAATGGCACTTTTCTCTACCAGCCTTCCAAGGTCGAAATGTTTCAATTCCAGAGTCAAATCTCAATATAATTTGCTCGATTGAGGAAACTAGTATTGTTGCGTCATCATTTGAAGTGCTAGTAGAACAACAACTAGCAATAACATCTCATGTTCTACCGGTGTTTCTTTCAATTCTTTTCTTTTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

212

Amino Acids

23.63

Weight (kDa)

4.62

Isoelectric Point (pI)

67.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	126, 337, 354
AfaI	GTAC	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	601
AhlI	ACTAGT	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	374
ApoI	RAATTY	3 cut(s)	126, 337, 354
AsiGI	ACCGGT	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	484
AxyI	CCTNAGG	1 cut(s)	114
BccI	CCATC	2 cut(s)	90, 373
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BcoDI	GTCTC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	4 cut(s)	413, 534, 563, 578
BfmI	CTRYAG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	601
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	601
BsrGI	TGTACA	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	288
BstXI	CCANNNNNNTGG	1 cut(s)	89
Bsu36I	CCTNAGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	601
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	601
CviAII	CATG	1 cut(s)	593
CviJI	RGCY	3 cut(s)	74, 416, 467
CviKI_1	RGCY	3 cut(s)	74, 416, 467
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	472
EcoT22I	ATGCAT	3 cut(s)	63, 180, 223
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	1 cut(s)	596
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	1 cut(s)	592
FauNDI	CATATG	2 cut(s)	57, 174
FspBI	CTAG	4 cut(s)	413, 534, 563, 578
HapII	CCGG	1 cut(s)	602
HgaI	GACGC	1 cut(s)	534
Hin1II	CATG	1 cut(s)	596
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	233, 235
Hpy188I	TCNGA	2 cut(s)	184, 316
Hpy188III	TCNNGA	4 cut(s)	113, 131, 359, 494
Hpy8I	GTNNAC	2 cut(s)	233, 235
HpyAV	CCTTC	4 cut(s)	38, 85, 281, 478
HpyCH4V	TGCA	5 cut(s)	14, 61, 178, 221, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	596
LpnPI	CCDG	8 cut(s)	126, 144, 213, 264, 372, 477, 507, 615
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	4 cut(s)	413, 534, 563, 578
MaeIII	GTNAC	1 cut(s)	408
MboII	GAAGA	3 cut(s)	146, 341, 422
MfeI	CAATTG	1 cut(s)	157
MluCI	AATT	8 cut(s)	126, 157, 189, 337, 354, 489, 513, 615
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	4 cut(s)	60, 109, 444, 520
Mph1103I	ATGCAT	3 cut(s)	63, 180, 223
MroXI	GAANNNNTTC	1 cut(s)	484
MseI	TTAA	3 cut(s)	192, 261, 305
MspI	CCGG	1 cut(s)	602
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeI	CATATG	2 cut(s)	57, 174
NlaIII	CATG	1 cut(s)	596
NsiI	ATGCAT	3 cut(s)	63, 180, 223
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	484
PinAI	ACCGGT	1 cut(s)	601
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	192, 261, 305
SchI	GAGTC	1 cut(s)	506
SetI	ASST	2 cut(s)	49, 478
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	288
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	8 cut(s)	126, 157, 189, 337, 354, 489, 513, 615
SspMI	CTAG	4 cut(s)	413, 534, 563, 578
StyI	CCWWGG	1 cut(s)	472
TaqI	TCGA	3 cut(s)	85, 478, 521
TasI	AATT	8 cut(s)	126, 157, 189, 337, 354, 489, 513, 615
TatI	WGTACW	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	192, 261, 305
Tru9I	TTAA	3 cut(s)	192, 261, 305
TscAI	CASTG	1 cut(s)	21
TspDTI	ATGAA	6 cut(s)	17, 57, 138, 300, 309, 342
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	3 cut(s)	126, 337, 354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	4 cut(s)	413, 534, 563, 578
Zsp2I	ATGCAT	3 cut(s)	63, 180, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.