Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005328

Physical Location & Seq

Genomic Coordinates Forward (+)

32733286 .. 32736907

Gene Structure 3622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1199700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGAGTTCCTCCGCGGAGACCTTCAGATGCGAGACGCCGGTGAGCAAAACCCTAAACCCTGAGCCCCAAATGCGAGAAAATGAGACGCTGAGCTTCAAAACCCCCGAGAAGCCACCGCAACTCCGTCGTGGAGCTCGCAGCCGTAACGTCGCGCTCTCCATTGAACAAGTTAGAAGATCCGCCGCCAAAAGCCTGTTTAAGTCGACCCAGAAGAAGCAACTGACGGATGAGATCGCATCTTGGCCGGACAAAACCCCGCTGAAGACCCGCGTTCGCCGCTCCATGCAGCTACCGGAAAAGTATGAGATGTTGGGGGAGTTTTTCAATTGCTTGGATATTTCGATTGGGAGGTTGCGAAATAAGGGTTTGAAGTCGAATTTTACGAATATTAGCCCGGTGATTGAGCATTTAACGGATAGGAGGTTTACTTATACCCACTTGGCTCAGCTGAAATTTATTTTACCTGAGGTAATTGAGATAAAGAAAATGGTTGTGTGGGATGAGAAAACCAGTCGTAGGAAGCCGGATCTTCACATTAGCATGAATATTCATGCAGTGGCGAATGATGGCAAGTTGAAATCTGAAGGTGGTGGGATTATGCGTTTGAGGAAGGCTTTCCGCAAACGGCTTGCAGATATTTCAAAATCCTCTCCTGAGGATTACGAAATTCCAGAAGAAATTCTACCATATCCATTCAATCATGTGAAGGAACACATGCATTCAGATACGGTCAAGTTTCCTGCATCCTCATCTCCTGGTGAGGTATTGTCCAGCGTATGCACAGTTGAGCAAGCAGCAGTATCAACAATCTGCCTTCAGGGTGATGCAATTCCAGATGAAATGCATTTAATGACATCTAATCAATCAAAGGGGGATTTGAATTCAAACATAAATGAGACTCCCACACAGTCAGTGCCAATTAAGACATTATTTGAAACACCTAAAAAGAAGCAATCAGCAATAGAAGGTTATCTGTCCCGGTCTTTTCAAAGGCACTCTTCTCAGAAAGTTACAATAACTGAAACCCAATCTCCAAAATTTTCTGTTCCAGAGTCAAATTTCAGTGCTTTTTTCTCCACTGAGGAAATTAGTACCGCTGCTTCATCCTATGGCCAAGTTCCTGCAACTCCAACTAAAGAGAGATACCCCGTAGAAAATGATGATAGTTTGCCCAAAACAGGTGCCAGCATTGAGTCGACCCCAGGAAAGGTTGCATCAACACCAGCCAGGTTGATGACCACAACACCTGCGTTGCACCCACCAAAGAGATGCTATATGAGCCCAGATGATAATTCTACAAGCTCGCCAAATAAATTGTTTCGGCTTCCTCCATGCTCCAGGTCATTGAAATTTGACACTCCTGTGAAGAATAATATGTTGAGCCCAGATTATAATTCTACAAGCTCACCGAACAAGTTGGTTAGGCATCCTACATGCTCCAGGTCATTAAAATTTAACAGTCCAGTGAAGAATAAACTGTTTGAGGAGAAAGTTCTTGTTCTGGATGCCGCATCACTTGATAGTGACATTTCCAATGTTCTTTCAGAAGGTCTTCTGCAATCAATTAAAGACAAGGAGAGAAAGGCAAAGGAGCGAAATGCAGCCATCTTGCAAGCAAAGAGGCGACAACAGATGATTTCCAGCCTTCCTGAACTCTTCAATATGATTCATTTCTTATTTCAATCAATGAACTGTTCATTTATGAAAAAAGAGGATCTTGTAGAGAAGCTAATTTTTAGCCATTCTGATATTGTTGATGAAGGTGAAGTTGAAGAGCAGCTTAAGTTGCTATTAGAACTGGTTCCAGAATGGATTTCTGAAAAGTTCGCATCTGGAATTGTCATCAAGATTAATAAATTGTCAAACCCCGAGTCCATACGTGCACGGCTTGAAGAAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0031570 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0046483 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051276 GO:0051726 GO:0065007 GO:0070182 GO:0071704 GO:0071840 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDT1 CDT1_C

Protein Analysis

635

Amino Acids

71.47

Weight (kDa)

9.16

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDT1	PF08839	97 - 214	4.3e-11	DNA replication factor CDT1 like
CDT1_C	PF16679	518 - 608	5.4e-22	DNA replication factor Cdt1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31270
fragaria_vesca	FvH4_2g21720 FvH4_2g21720 FvH4_2g21720 FvH4_2g21720
malus_domestica	MD05G1158100.v1.1 MD05G1191600.v1.1 MD05G1199700.v1.1 MD10G1150900.v1.1 MD10G1178300.v1.1
prunus_persica	Prupe.8G189500_v2.0.a1 Prupe.8G217800_v2.0.a1 Prupe.8G225500_v2.0.a1 Prupe.8G225500_v2.0.a1
pyrus_communis	pycom05g15010 pycom05g18610 pycom10g12990 pycom10g13000 pycom10g15480
rosa_chinensis	RchiOBHm_Chr6g0288401
rosa_laevigata	RLG00000012407
rosa_multiflora	Rmu_sc0001038.1_g000012
rosa_roxburghii	Rroxscaffold_7G00180090
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307200 Rh6BG313200 Rh6CG321000 Rh6DG306400
rosa_wichuraiana	Rw6G026580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1392
AarI	CACCTGC	1 cut(s)	1255
Acc36I	ACCTGC	1 cut(s)	1255
AccB1I	GGYRCC	1 cut(s)	1181
AccBSI	CCGCTC	1 cut(s)	279
AccI	GTMKAC	2 cut(s)	203, 1196
AccII	CGCG	3 cut(s)	14, 152, 270
AclWI	GGATC	3 cut(s)	171, 534, 1722
AcoI	YGGCCR	2 cut(s)	242, 1111
AcsI	RAATTY	9 cut(s)	376, 452, 666, 678, 880, 1037, 1057, 1349, 1451
AcuI	CTGAAG	4 cut(s)	7, 281, 603, 800
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	1093
AfiI	CCNNNNNNNGG	3 cut(s)	516, 1178, 1207
AflII	CTTAAG	1 cut(s)	1781
AjnI	CCWGG	5 cut(s)	754, 1201, 1226, 1337, 1439
AleI	CACNNNNGTG	1 cut(s)	1361
AluBI	AGCT	8 cut(s)	93, 134, 289, 448, 1302, 1404, 1729, 1780
AluI	AGCT	8 cut(s)	93, 134, 289, 448, 1302, 1404, 1729, 1780
Alw21I	GWGCWC	2 cut(s)	136, 1885
Alw26I	GTCTC	4 cut(s)	11, 26, 77, 890
Alw44I	GTGCAC	1 cut(s)	1881
AlwI	GGATC	3 cut(s)	171, 534, 1722
Ama87I	CYCGRG	2 cut(s)	104, 1868
AoxI	GGCC	2 cut(s)	242, 1111
ApaLI	GTGCAC	1 cut(s)	1881
ApeKI	GCWGC	6 cut(s)	138, 286, 794, 1097, 1601, 1777
ApoI	RAATTY	9 cut(s)	376, 452, 666, 678, 880, 1037, 1057, 1349, 1451
ArsI	GACNNNNNNTTYG	2 cut(s)	1856, 1888
AseI	ATTAAT	1 cut(s)	1851
Asp700I	GAANNNNTTC	4 cut(s)	614, 678, 1551, 1800
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	2 cut(s)	395, 979
AsuHPI	GGTGA	6 cut(s)	52, 409, 770, 833, 1398, 1775
AvaI	CYCGRG	2 cut(s)	104, 1868
AxyI	CCTNAGG	2 cut(s)	465, 654
BaeGI	GKGCMC	1 cut(s)	1885
BalI	TGGCCA	1 cut(s)	1113
BanI	GGYRCC	1 cut(s)	1181
BanII	GRGCYC	4 cut(s)	66, 136, 1283, 1385
BarI	GAAGNNNNNNTAC	4 cut(s)	666, 698, 1084, 1116
BbsI	GAAGAC	2 cut(s)	269, 1544
Bbv12I	GWGCWC	2 cut(s)	136, 1885
BbvI	GCAGC	6 cut(s)	150, 298, 806, 1084, 1613, 1789
BccI	CCATC	2 cut(s)	560, 1613
BceAI	ACGGC	3 cut(s)	126, 641, 1901
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	5 cut(s)	756, 1203, 1228, 1339, 1441
BcnI	CCSGG	2 cut(s)	395, 979
BcoDI	GTCTC	4 cut(s)	11, 26, 77, 890
BfrI	CTTAAG	1 cut(s)	1781
BfuAI	ACCTGC	1 cut(s)	1255
BisI	GCNGC	9 cut(s)	139, 183, 277, 287, 795, 1098, 1509, 1602, 1778
BlpI	GCTNAGC	2 cut(s)	89, 444
BlsI	GCNGC	9 cut(s)	140, 184, 278, 288, 796, 1099, 1510, 1603, 1779
Bme1390I	CCNGG	7 cut(s)	395, 756, 979, 1203, 1228, 1339, 1441
BmeT110I	CYCGRG	2 cut(s)	104, 1868
BmiI	GGNNCC	2 cut(s)	1183, 1803
BmrFI	CCNGG	7 cut(s)	395, 756, 979, 1203, 1228, 1339, 1441
BpiI	GAAGAC	2 cut(s)	269, 1544
BpmI	CTGGAG	2 cut(s)	1321, 1423
Bpu10I	CCTNAGC	1 cut(s)	60
Bpu1102I	GCTNAGC	2 cut(s)	89, 444
BpuMI	CCSGG	2 cut(s)	395, 979
BsaAI	YACGTR	1 cut(s)	1880
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	12, 1201
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 1015, 1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	516, 1178, 1207
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	510, 1463, 1803
Bse21I	CCTNAGG	2 cut(s)	465, 654
BseBI	CCWGG	5 cut(s)	756, 1203, 1228, 1339, 1441
BseDI	CCNNGG	2 cut(s)	12, 1201
BseGI	GGATG	6 cut(s)	232, 505, 743, 1103, 1426, 1510
BseLI	CCNNNNNNNGG	3 cut(s)	516, 1178, 1207
BseMII	CTCAG	7 cut(s)	51, 80, 456, 458, 645, 1016, 1071
BseNI	ACTGG	3 cut(s)	510, 1463, 1803
BseRI	GAGGAG	1 cut(s)	1499
BseSI	GKGCMC	1 cut(s)	1885
BseXI	GCAGC	6 cut(s)	150, 298, 806, 1084, 1613, 1789
Bsh1236I	CGCG	3 cut(s)	14, 152, 270
BshFI	GGCC	2 cut(s)	244, 1113
BshNI	GGYRCC	1 cut(s)	1181
BsiHKAI	GWGCWC	2 cut(s)	136, 1885
BsiHKCI	CYCGRG	2 cut(s)	104, 1868
BsiSI	CCGG	6 cut(s)	38, 245, 293, 395, 524, 979
BslFI	GGGAC	1 cut(s)	961
BslI	CCNNNNNNNGG	3 cut(s)	516, 1178, 1207
BsmAI	GTCTC	4 cut(s)	11, 26, 77, 890
BsmBI	CGTCTC	2 cut(s)	26, 77
BsmFI	GGGAC	1 cut(s)	961
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	244, 1113
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	2 cut(s)	104, 1868
Bsp1286I	GDGCHC	5 cut(s)	66, 136, 1283, 1385, 1885
Bsp143I	GATC	4 cut(s)	176, 231, 526, 1714
Bsp1720I	GCTNAGC	2 cut(s)	89, 444
BspANI	GGCC	2 cut(s)	244, 1113
BspCNI	CTCAG	7 cut(s)	52, 81, 457, 457, 646, 1015, 1072
BspFNI	CGCG	3 cut(s)	14, 152, 270
BspLI	GGNNCC	2 cut(s)	1183, 1803
BspMI	ACCTGC	1 cut(s)	1255
BspPI	GGATC	3 cut(s)	171, 534, 1722
BspQI	GCTCTTC	1 cut(s)	1767
BspT107I	GGYRCC	1 cut(s)	1181
BspTI	CTTAAG	1 cut(s)	1781
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	510, 1463, 1803
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	12, 1201
BssMI	GATC	4 cut(s)	176, 231, 526, 1714
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	5 cut(s)	756, 1203, 1228, 1339, 1441
Bst4CI	ACNGT	6 cut(s)	730, 784, 909, 1460, 1479, 1694
Bst6I	CTCTTC	3 cut(s)	1003, 1661, 1767
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	1781
BstBAI	YACGTR	1 cut(s)	1880
BstC8I	GCNNGC	6 cut(s)	136, 630, 792, 1186, 1304, 1614
BstDEI	CTNAG	7 cut(s)	60, 89, 444, 465, 654, 1002, 1080
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	6 cut(s)	232, 505, 743, 1103, 1426, 1510
BstFNI	CGCG	3 cut(s)	14, 152, 270
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	179, 234, 529, 1717
BstMAI	GTCTC	4 cut(s)	11, 26, 77, 890
BstMBI	GATC	4 cut(s)	176, 231, 526, 1714
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 276, 1278, 1786
BstNI	CCWGG	5 cut(s)	756, 1203, 1228, 1339, 1441
BstNSI	RCATGY	2 cut(s)	718, 1437
BstSCI	CCNGG	7 cut(s)	393, 754, 977, 1201, 1226, 1337, 1439
BstSLI	GKGCMC	1 cut(s)	1885
BstUI	CGCG	3 cut(s)	14, 152, 270
BstV1I	GCAGC	6 cut(s)	150, 298, 806, 1084, 1613, 1789
BstV2I	GAAGAC	2 cut(s)	269, 1544
BstX2I	RGATCY	3 cut(s)	176, 526, 1714
BstYI	RGATCY	3 cut(s)	176, 526, 1714
Bsu36I	CCTNAGG	2 cut(s)	465, 654
BsuRI	GGCC	2 cut(s)	244, 1113
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	6 cut(s)	232, 505, 743, 1103, 1426, 1510
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	5 cut(s)	561, 918, 1069, 1077, 1470
BveI	ACCTGC	1 cut(s)	1255
Cac8I	GCNNGC	6 cut(s)	136, 630, 792, 1186, 1304, 1614
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	37
Cfr42I	CCGCGG	1 cut(s)	15
CseI	GACGC	2 cut(s)	43, 94
Csp6I	GTAC	1 cut(s)	1092
CviAII	CATG	7 cut(s)	283, 541, 551, 701, 715, 1332, 1434
CviQI	GTAC	1 cut(s)	1092
DdeI	CTNAG	7 cut(s)	60, 89, 444, 465, 654, 1002, 1080
DpnI	GATC	4 cut(s)	178, 233, 528, 1716
DpnII	GATC	4 cut(s)	176, 231, 526, 1714
EaeI	YGGCCR	2 cut(s)	242, 1111
Eam1104I	CTCTTC	3 cut(s)	1003, 1661, 1767
EarI	CTCTTC	3 cut(s)	1003, 1661, 1767
EciI	GGCGGA	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	4 cut(s)	66, 136, 1283, 1385
Eco31I	GGTCTC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	4 cut(s)	7, 281, 603, 800
Eco81I	CCTNAGG	2 cut(s)	465, 654
Eco88I	CYCGRG	2 cut(s)	104, 1868
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	5 cut(s)	754, 1201, 1226, 1337, 1439
EcoT22I	ATGCAT	2 cut(s)	720, 846
EcoT38I	GRGCYC	4 cut(s)	66, 136, 1283, 1385
Esp3I	CGTCTC	2 cut(s)	26, 77
FaeI	CATG	7 cut(s)	286, 544, 554, 704, 718, 1335, 1437
FalI	AAGNNNNNCTT	6 cut(s)	982, 1014, 1701, 1733, 1764, 1796
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	7 cut(s)	282, 540, 550, 700, 714, 1331, 1433
FauI	CCCGC	2 cut(s)	264, 275
FblI	GTMKAC	2 cut(s)	203, 1196
Fnu4HI	GCNGC	9 cut(s)	139, 183, 277, 287, 795, 1098, 1509, 1602, 1778
FokI	GGATG	6 cut(s)	239, 512, 730, 1090, 1413, 1517
FriOI	GRGCYC	4 cut(s)	66, 136, 1283, 1385
Fsp4HI	GCNGC	9 cut(s)	139, 183, 277, 287, 795, 1098, 1509, 1602, 1778
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	9 cut(s)	139, 183, 277, 287, 795, 1098, 1509, 1602, 1778
GsuI	CTGGAG	2 cut(s)	1321, 1423
HaeIII	GGCC	2 cut(s)	244, 1113
HapII	CCGG	6 cut(s)	38, 245, 293, 395, 524, 979
HgaI	GACGC	2 cut(s)	43, 94
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	7 cut(s)	286, 544, 554, 704, 718, 1335, 1437
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	2 cut(s)	204, 1197
HindII	GTYRAC	2 cut(s)	204, 1197
HinfI	GANTC	5 cut(s)	898, 1052, 1193, 1666, 1871
HpaII	CCGG	6 cut(s)	38, 245, 293, 395, 524, 979
HphI	GGTGA	6 cut(s)	52, 409, 770, 833, 1398, 1775
Hpy166II	GTNNAC	4 cut(s)	204, 426, 1197, 1883
Hpy188I	TCNGA	7 cut(s)	26, 583, 724, 1005, 1546, 1747, 1819
Hpy188III	TCNNGA	9 cut(s)	653, 671, 833, 1049, 1502, 1649, 1805, 1833, 1846
Hpy8I	GTNNAC	4 cut(s)	204, 426, 1197, 1883
Hpy99I	CGWCG	2 cut(s)	129, 152
HpyAV	CCTTC	9 cut(s)	31, 578, 604, 700, 824, 959, 1541, 1655, 1754
HpyCH4III	ACNGT	6 cut(s)	730, 784, 909, 1460, 1479, 1694
HpyCH4IV	ACGT	2 cut(s)	147, 1879
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 276, 1278, 1786
HpyF3I	CTNAG	7 cut(s)	60, 89, 444, 465, 654, 1002, 1080
HpySE526I	ACGT	2 cut(s)	147, 1879
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	7 cut(s)	286, 544, 554, 704, 718, 1335, 1437
HspAI	GCGC	1 cut(s)	152
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	176, 231, 526, 1714
LguI	GCTCTTC	1 cut(s)	1767
LmnI	GCTCC	5 cut(s)	131, 284, 1340, 1442, 1591
Lsp1109I	GCAGC	6 cut(s)	150, 298, 806, 1084, 1613, 1789
MaeII	ACGT	2 cut(s)	147, 1879
MaeIII	GTNAC	3 cut(s)	143, 1009, 1523
MalI	GATC	4 cut(s)	178, 233, 528, 1716
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	4 cut(s)	176, 231, 526, 1714
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	3 cut(s)	176, 526, 1714
MhlI	GDGCHC	5 cut(s)	66, 136, 1283, 1385, 1885
MlsI	TGGCCA	1 cut(s)	1113
MluNI	TGGCCA	1 cut(s)	1113
MlyI	GAGTC	4 cut(s)	892, 1061, 1202, 1880
MmeI	TCCRAC	1 cut(s)	1154
Mox20I	TGGCCA	1 cut(s)	1113
Mph1103I	ATGCAT	2 cut(s)	720, 846
MroXI	GAANNNNTTC	4 cut(s)	614, 678, 1551, 1800
MscI	TGGCCA	1 cut(s)	1113
MseI	TTAA	9 cut(s)	198, 410, 848, 921, 1448, 1455, 1566, 1782, 1851
MslI	CAYNNNNRTG	2 cut(s)	539, 1361
Msp20I	TGGCCA	1 cut(s)	1113
MspA1I	CMGCKG	4 cut(s)	14, 259, 448, 1097
MspCI	CTTAAG	1 cut(s)	1781
MspI	CCGG	6 cut(s)	38, 245, 293, 395, 524, 979
MspR9I	CCNGG	7 cut(s)	395, 756, 979, 1203, 1228, 1339, 1441
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	5 cut(s)	756, 1203, 1228, 1339, 1441
MvnI	CGCG	3 cut(s)	14, 152, 270
MwoI	GCNNNNNNNGC	4 cut(s)	70, 276, 1278, 1786
NciI	CCSGG	2 cut(s)	395, 979
NdeII	GATC	4 cut(s)	176, 231, 526, 1714
NlaIII	CATG	7 cut(s)	286, 544, 554, 704, 718, 1335, 1437
NlaIV	GGNNCC	2 cut(s)	1183, 1803
NmuCI	GTSAC	1 cut(s)	1523
NsiI	ATGCAT	2 cut(s)	720, 846
NspI	RCATGY	2 cut(s)	718, 1437
OliI	CACNNNNGTG	1 cut(s)	1361
PaqCI	CACCTGC	1 cut(s)	1255
PciSI	GCTCTTC	1 cut(s)	1767
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	4 cut(s)	614, 678, 1551, 1800
PfeI	GAWTC	1 cut(s)	1666
PkrI	GCNGC	9 cut(s)	140, 184, 278, 288, 796, 1099, 1510, 1603, 1779
PleI	GAGTC	4 cut(s)	892, 1060, 1201, 1879
PpsI	GAGTC	4 cut(s)	892, 1060, 1201, 1879
Ppu21I	YACGTR	1 cut(s)	1880
PshBI	ATTAAT	1 cut(s)	1851
PsiI	TTATAA	1 cut(s)	1392
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	5 cut(s)	754, 1201, 1226, 1337, 1439
PspGI	CCWGG	5 cut(s)	754, 1201, 1226, 1337, 1439
PspN4I	GGNNCC	2 cut(s)	1183, 1803
PsuI	RGATCY	3 cut(s)	176, 526, 1714
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	1093
RsaNI	GTAC	1 cut(s)	1092
RseI	CAYNNNNRTG	2 cut(s)	539, 1361
SacI	GAGCTC	1 cut(s)	136
SacII	CCGCGG	1 cut(s)	15
SalI	GTCGAC	2 cut(s)	202, 1195
SapI	GCTCTTC	1 cut(s)	1767
SaqAI	TTAA	9 cut(s)	198, 410, 848, 921, 1448, 1455, 1566, 1782, 1851
SatI	GCNGC	9 cut(s)	139, 183, 277, 287, 795, 1098, 1509, 1602, 1778
Sau3AI	GATC	4 cut(s)	176, 231, 526, 1714
SchI	GAGTC	4 cut(s)	892, 1061, 1202, 1880
ScrFI	CCNGG	7 cut(s)	395, 756, 979, 1203, 1228, 1339, 1441
SduI	GDGCHC	5 cut(s)	66, 136, 1283, 1385, 1885
Sfr303I	CCGCGG	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1361
SmlI	CTYRAG	1 cut(s)	1781
SmoI	CTYRAG	1 cut(s)	1781
SspI	AATATT	2 cut(s)	388, 547
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	7 cut(s)	393, 754, 977, 1201, 1226, 1337, 1439
TaaI	ACNGT	6 cut(s)	730, 784, 909, 1460, 1479, 1694
TaiI	ACGT	2 cut(s)	150, 1882
TaqI	TCGA	4 cut(s)	203, 341, 374, 1196
TauI	GCSGC	3 cut(s)	185, 279, 1511
TfiI	GAWTC	1 cut(s)	1666
Tru1I	TTAA	9 cut(s)	198, 410, 848, 921, 1448, 1455, 1566, 1782, 1851
Tru9I	TTAA	9 cut(s)	198, 410, 848, 921, 1448, 1455, 1566, 1782, 1851
TscAI	CASTG	5 cut(s)	561, 918, 1069, 1084, 1470
TseFI	GTSAC	1 cut(s)	1523
TseI	GCWGC	6 cut(s)	138, 286, 794, 1097, 1601, 1777
Tsp45I	GTSAC	1 cut(s)	1523
TspDTI	ATGAA	9 cut(s)	539, 557, 852, 1092, 1658, 1686, 1703, 1718, 1773
TspGWI	ACGGA	3 cut(s)	113, 239, 428
TspRI	CASTG	5 cut(s)	561, 918, 1069, 1084, 1470
Vha464I	CTTAAG	1 cut(s)	1781
VneI	GTGCAC	1 cut(s)	1881
VspI	ATTAAT	1 cut(s)	1851
XapI	RAATTY	9 cut(s)	376, 452, 666, 678, 880, 1037, 1057, 1349, 1451
XceI	RCATGY	2 cut(s)	718, 1437
XmiI	GTMKAC	2 cut(s)	203, 1196
XmnI	GAANNNNTTC	4 cut(s)	614, 678, 1551, 1800
Zsp2I	ATGCAT	2 cut(s)	720, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.