MD06G1007500.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012568
Physical Location & Seq
Reverse (-)
750958 .. 751230
273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1007500.v1.1.491

Sequence Viewer

Length: 273 bp
ATGGCTGCAAGGACTATATCCATTATTTTTGCTATGCTTGTCCTGGGCTGCCATTCTGTTTCTGCTGCCATTTTCGGAAATATCCATATTGACGTAGAGAACAGAGTATTACCAAAAGCTGATGTCGAACTTCACTGCAAGTCCAAGAAAGACGACTTAGGCAATCATGTAATTCCACCTAGTGGAGCGTACGACTTTACATTCCATGACAATCTGTGGGACACGACCCTCTTCTATTGCAACGTGCAGTGGAGAAGGTTGGATGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

91

Amino Acids

10.16

Weight (kDa)

6.48

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 86 2.8e-16 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 182
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 5, 48, 65
BbvI GCAGC 2 cut(s) 35, 52
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 6, 49, 66
BlsI GCNGC 3 cut(s) 7, 50, 67
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 35, 52
BsgI GTGCAG 1 cut(s) 266
BsiWI CGTACG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 268
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 35, 52
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 2 cut(s) 133, 254
BtsIMutI CAGTG 2 cut(s) 133, 254
Csp6I GTAC 1 cut(s) 190
CviAII CATG 2 cut(s) 167, 206
CviJI RGCY 3 cut(s) 5, 48, 119
CviKI_1 RGCY 3 cut(s) 5, 48, 119
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 170, 209
FaiI YATR 5 cut(s) 17, 35, 87, 168, 207
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 166, 205
Fnu4HI GCNGC 3 cut(s) 6, 49, 66
Fsp4HI GCNGC 3 cut(s) 6, 49, 66
FspBI CTAG 1 cut(s) 180
GluI GCNGC 3 cut(s) 6, 49, 66
Hin1II CATG 2 cut(s) 170, 209
Hpy188I TCNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 2 cut(s) 93, 243
HpyCH4V TGCA 4 cut(s) 8, 138, 240, 247
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 2 cut(s) 93, 243
Hsp92II CATG 2 cut(s) 170, 209
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 29, 56
Lsp1109I GCAGC 2 cut(s) 35, 52
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 93, 243
MboII GAAGA 1 cut(s) 223
MluCI AATT 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NlaIII CATG 2 cut(s) 170, 209
Pfl23II CGTACG 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 3 cut(s) 7, 50, 67
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspLI CGTACG 1 cut(s) 189
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SatI GCNGC 3 cut(s) 6, 49, 66
ScrFI CCNGG 1 cut(s) 44
SetI ASST 5 cut(s) 96, 121, 181, 246, 260
Sse9I AATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 42
TaiI ACGT 2 cut(s) 96, 246
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 171
TscAI CASTG 2 cut(s) 140, 254
TseI GCWGC 3 cut(s) 5, 48, 65
TspRI CASTG 2 cut(s) 140, 254
Van91I CCANNNNNTGG 1 cut(s) 182
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.