MD06G1046000.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012568
Physical Location & Seq
Reverse (-)
6238216 .. 6238539
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1046000.v1.1.491

Sequence Viewer

Length: 324 bp
ATGGCTGGATGGGGGGGGGTCCTTGTCGAGATACAAACCGTTCTGGACCCTTCAAGGGCTGACCTCCAAGTACAGTGTTTGTCCGGGGACGACAATCTGCACAACCATATAGTCGAATTTGGCAACACTTACAACTTCACGTTCGAGAATAATGTTTGGGACACAACGCTTTTCTTTTGCTACTTTCAGTGGGAAAAGCCGGACCACGTATGGCTCCAAGAACGTTGCATGCATTATTGCAGGTGGCGGGTTGAAGAGGAAGGCCTGTATTCCTTGAGCAATAAGAACGGCATTTGGGAGAATCTATACAATTGGCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

108

Amino Acids

12.84

Weight (kDa)

4.6

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 9 - 105 1.3e-19 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 1 cut(s) 247
AclI AACGTT 1 cut(s) 223
AcsI RAATTY 1 cut(s) 116
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 54, 254
AoxI GGCC 2 cut(s) 262, 314
ApoI RAATTY 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 19, 46, 202
AsuC2I CCSGG 1 cut(s) 85
AvaII GGWCC 3 cut(s) 19, 46, 202
BccI CCATC 1 cut(s) 3
BceAI ACGGC 1 cut(s) 304
BcnI CCSGG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 3 cut(s) 19, 46, 202
BmgT120I GGNCC 3 cut(s) 19, 46, 202
BmiI GGNNCC 3 cut(s) 20, 48, 215
BmrFI CCNGG 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 264, 316
BsiSI CCGG 2 cut(s) 84, 200
BslFI GGGAC 2 cut(s) 101, 173
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 101, 173
BsnI GGCC 2 cut(s) 264, 316
BspACI CCGC 1 cut(s) 247
BspANI GGCC 2 cut(s) 264, 316
BspLI GGNNCC 3 cut(s) 20, 48, 215
BspMI ACCTGC 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 40, 75
Bst6I CTCTTC 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 230
BstF5I GGATG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 264, 316
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 80, 194
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 19, 46, 202
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 229
CviJI RGCY 6 cut(s) 5, 59, 199, 214, 264, 316
CviKI_1 RGCY 6 cut(s) 5, 59, 199, 214, 264, 316
CviQI GTAC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 264
Eco47I GGWCC 3 cut(s) 19, 46, 202
EcoO109I RGGNCCY 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 234
FaeI CATG 1 cut(s) 232
FaiI YATR 5 cut(s) 108, 110, 211, 230, 307
FaqI GGGAC 2 cut(s) 101, 173
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 240
FokI GGATG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 264, 316
HapII CCGG 2 cut(s) 84, 200
Hin1II CATG 1 cut(s) 232
HinfI GANTC 1 cut(s) 301
HpaII CCGG 2 cut(s) 84, 200
Hpy188III TCNNGA 3 cut(s) 28, 44, 145
HpyAV CCTTC 2 cut(s) 60, 254
HpyCH4III ACNGT 2 cut(s) 40, 75
HpyCH4IV ACGT 3 cut(s) 140, 207, 223
HpyCH4V TGCA 4 cut(s) 100, 228, 232, 240
HpySE526I ACGT 3 cut(s) 140, 207, 223
Hsp92II CATG 1 cut(s) 232
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 29, 97, 213, 226, 278
MaeII ACGT 3 cut(s) 140, 207, 223
MboII GAAGA 1 cut(s) 266
MfeI CAATTG 1 cut(s) 310
MluCI AATT 2 cut(s) 116, 310
MnlI CCTC 2 cut(s) 74, 250
Mph1103I ATGCAT 1 cut(s) 234
MspI CCGG 2 cut(s) 84, 200
MspR9I CCNGG 1 cut(s) 85
MunI CAATTG 1 cut(s) 310
NciI CCSGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 3 cut(s) 20, 48, 215
NsiI ATGCAT 1 cut(s) 234
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PaqCI CACCTGC 1 cut(s) 231
PceI AGGCCT 1 cut(s) 264
PfeI GAWTC 1 cut(s) 301
Ppu21I YACGTR 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 20, 48, 215
PspPI GGNCC 3 cut(s) 19, 46, 202
PspPPI RGGWCCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
Sau96I GGNCC 3 cut(s) 19, 46, 202
ScrFI CCNGG 1 cut(s) 85
SetI ASST 5 cut(s) 66, 143, 210, 226, 245
SinI GGWCC 3 cut(s) 19, 46, 202
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SphI GCATGC 1 cut(s) 232
Sse9I AATT 2 cut(s) 116, 310
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 1 cut(s) 247
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 40, 75
TaiI ACGT 3 cut(s) 143, 210, 226
TaqI TCGA 3 cut(s) 27, 114, 144
TasI AATT 2 cut(s) 116, 310
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 2 cut(s) 80, 194
TspRI CASTG 2 cut(s) 80, 194
VpaK11BI GGWCC 3 cut(s) 19, 46, 202
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 232
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.