Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012568

Physical Location & Seq

Genomic Coordinates Reverse (-)

5809138 .. 5809581

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G054200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTGGTGGTAGCCGCAGCATATTGGTTTTAGTTGCCATGGTGGTCCTCACATTGGACCAAACTTCCCTGCAGGTTTCTGCATTGCTGGGCGGGACGGTTTACGTGAGATTAACCAACCGACTAGAACCTTCAAACGCCACTGTCACAGTTCATTGCAAATCCGGGGACGACGATCTGGGAGATCATCTAGTCGCATTAGGCGAAACTTATGAGTTCTCTTTTAAGAACAATATCTGGGATTCGACCCTCTTCTTTTGCAACTTTGATTGGGTAAGTGCTTCTCTAGGCAAATCGGTGTCTGGCACCTTTGACATTTACAAGGCCAGGAGGGATCAAGAACGGTGCCTTCATGATTGCAACTGGTTGATTCTTGAAACAGGGCTGTATTCCTATACCCTAAGGACTAAAATTTGGGAAAATCTCTACAGTTGGCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

148

Amino Acids

16.58

Weight (kDa)

5.24

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24901
malus_domestica	MD00G1132500.v1.1 MD05G1010100.v1.1 MD06G1007500.v1.1 MD06G1007700.v1.1 MD06G1046000.v1.1
prunus_persica	Prupe.5G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396811
rosa_laevigata	RLG00000009504 RLG00000018688
rosa_multiflora	Rmu_sc0000487.1_g000019
rosa_roxburghii	Rroxscaffold_5G00341630
rosa_rugosa	Rorug03G0347600
rosa_samantha	Rh4AG075100 Rh4BG069700 Rh4CG077900 Rh4DG067300 Rh4DG067500
rosa_wichuraiana	Rw4G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	2 cut(s)	305, 345
AciI	CCGC	2 cut(s)	16, 93
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	135, 377
AjnI	CCWGG	1 cut(s)	326
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	2 cut(s)	324, 434
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	46, 58
AsuC2I	CCSGG	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	46, 58
AxyI	CCTNAGG	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	305, 345
BbvI	GCAGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	3 cut(s)	125, 191, 287
BfmI	CTRYAG	2 cut(s)	71, 427
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	16, 19
BlsI	GCNGC	2 cut(s)	17, 20
Bme1390I	CCNGG	2 cut(s)	166, 328
Bme18I	GGWCC	2 cut(s)	46, 58
BmgT120I	GGNCC	2 cut(s)	46, 58
BmiI	GGNNCC	2 cut(s)	307, 347
BmrFI	CCNGG	2 cut(s)	166, 328
BpuMI	CCSGG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	39, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	368
Bse21I	CCTNAGG	1 cut(s)	401
Bse3DI	GCAATG	2 cut(s)	83, 154
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	39, 165
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	83, 154
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	88
BshFI	GGCC	2 cut(s)	326, 436
BshNI	GGYRCC	2 cut(s)	305, 345
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	109, 182
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	109, 182
BsnI	GGCC	2 cut(s)	326, 436
Bsp143I	GATC	3 cut(s)	175, 184, 334
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	16, 93
BspANI	GGCC	2 cut(s)	326, 436
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	307, 347
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	342
BspT107I	GGYRCC	2 cut(s)	305, 345
BsrDI	GCAATG	2 cut(s)	83, 154
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	39, 165
BssMI	GATC	3 cut(s)	175, 184, 334
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	5 cut(s)	100, 145, 151, 345, 431
Bst6I	CTCTTC	1 cut(s)	257
BstBAI	YACGTR	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	401, 438
BstDSI	CCRYGG	1 cut(s)	39
BstKTI	GATC	3 cut(s)	178, 187, 337
BstMBI	GATC	3 cut(s)	175, 184, 334
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	164, 326
BstSFI	CTRYAG	2 cut(s)	71, 427
BstV1I	GCAGC	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	326, 436
BtgI	CCRYGG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	46, 58
CviAII	CATG	2 cut(s)	40, 353
CviJI	RGCY	5 cut(s)	5, 15, 326, 385, 436
CviKI_1	RGCY	5 cut(s)	5, 15, 326, 385, 436
DdeI	CTNAG	2 cut(s)	401, 438
DpnI	GATC	3 cut(s)	177, 186, 336
DpnII	GATC	3 cut(s)	175, 184, 334
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	46, 58
Eco81I	CCTNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	43, 356
FaiI	YATR	5 cut(s)	23, 41, 213, 354, 396
FaqI	GGGAC	2 cut(s)	109, 182
FatI	CATG	2 cut(s)	39, 352
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	16, 19
Fsp4HI	GCNGC	2 cut(s)	16, 19
FspBI	CTAG	3 cut(s)	125, 191, 287
GluI	GCNGC	2 cut(s)	16, 19
GsaI	CCCAGC	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	326, 436
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	2 cut(s)	43, 356
HinfI	GANTC	2 cut(s)	242, 370
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	3 cut(s)	338, 353, 374
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	141, 359
HpyCH4III	ACNGT	5 cut(s)	100, 145, 151, 345, 431
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	73, 83, 159, 261, 360
HpyF3I	CTNAG	2 cut(s)	401, 438
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	43, 356
Kzo9I	GATC	3 cut(s)	175, 184, 334
Lsp1109I	GCAGC	1 cut(s)	30
MaeI	CTAG	3 cut(s)	125, 191, 287
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	177, 186, 336
MboI	GATC	3 cut(s)	175, 184, 334
MboII	GAAGA	1 cut(s)	244
MluCI	AATT	1 cut(s)	411
MnlI	CCTC	3 cut(s)	59, 260, 324
MseI	TTAA	2 cut(s)	113, 225
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	166, 328
MvaI	CCWGG	1 cut(s)	328
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	175, 184, 334
NlaIII	CATG	2 cut(s)	43, 356
NlaIV	GGNNCC	2 cut(s)	307, 347
NmuCI	GTSAC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	242, 370
PkrI	GCNGC	2 cut(s)	17, 20
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	307, 347
PspPI	GGNCC	2 cut(s)	46, 58
PstI	CTGCAG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	113, 225
SatI	GCNGC	2 cut(s)	16, 19
Sau3AI	GATC	3 cut(s)	175, 184, 334
Sau96I	GGNCC	2 cut(s)	46, 58
SbfI	CCTGCAGG	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	166, 328
SdaI	CCTGCAGG	1 cut(s)	75
SetI	ASST	4 cut(s)	78, 108, 133, 311
SfcI	CTRYAG	2 cut(s)	71, 427
SinI	GGWCC	2 cut(s)	46, 58
Sse8387I	CCTGCAGG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	2 cut(s)	16, 93
SspMI	CTAG	3 cut(s)	125, 191, 287
StyD4I	CCNGG	2 cut(s)	164, 326
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	5 cut(s)	100, 145, 151, 345, 431
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	411
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	242, 370
Tru1I	TTAA	2 cut(s)	113, 225
Tru9I	TTAA	2 cut(s)	113, 225
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	143, 341
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	46, 58
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	3 cut(s)	125, 191, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.