Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000487.1

Orthogroup ID

OG0012568

Physical Location & Seq

Genomic Coordinates Reverse (-)

72199 .. 75111

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000487.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgggtgtaatatttcgctaccaagctttgctgctcgccttgttcattgcttcctttgtggcgcttacaaccgctgtggtacccttcaaagtcgtgacctcgatcgacaacacattacctgatgggcaagaactcaatgtccactgtaaatccggggacgacgatctaggcgctcaggtcatacccaatggaggtcattacgaatggagcttcaaagttaatgtatgggcaacaacgcttttcttctgttcatttaattgcaaagacggatcaggaacatttgacatctacagagccagtcgggatatcattagatgtgaagacaagtgcaactggaaagctgcccaagatggctccttcactcctcaacaagcttacaagccgtcgttcttcactcctgaggacctcagccaagccttcgttgagttcgttcttcactccttaagtcggtacaaattcttcaaacaggcagtcaactactctgaatttcatattaaaattgatgggttttgcttgaaattgagtatcttacctatgtgtttttgcttgaaattgaggagctcagccgaccgcacaaagaagacaagcagatcggagactcggagtccggactccggaggtcgacgcggtggcccatggcgggcgagtcggtgtcttgtgaaaactgaaaacagagaagagttgagtaccgtgtcgacgacatactctggactagtcgactccgatgtggagtgtgacctcatctccaaaggtggtcatggtcaggtcatagtttgtgaaatcattggtggcgagaataatgattggatccttgatggtcttaagagctccgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

278

Amino Acids

30.99

Weight (kDa)

6.23

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24901
malus_domestica	MD00G1132500.v1.1 MD05G1010100.v1.1 MD06G1007500.v1.1 MD06G1007700.v1.1 MD06G1046000.v1.1
prunus_persica	Prupe.5G054200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396811
rosa_laevigata	RLG00000009504 RLG00000018688
rosa_multiflora	Rmu_sc0000487.1_g000019
rosa_roxburghii	Rroxscaffold_5G00341630
rosa_rugosa	Rorug03G0347600
rosa_samantha	Rh4AG075100 Rh4BG069700 Rh4CG077900 Rh4DG067300 Rh4DG067500
rosa_wichuraiana	Rw4G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	3 cut(s)	622, 695, 717
AccII	CGCG	1 cut(s)	627
AccIII	TCCGGA	2 cut(s)	607, 614
AciI	CCGC	4 cut(s)	72, 571, 627, 640
AclWI	GGATC	3 cut(s)	277, 802, 815
AcsI	RAATTY	2 cut(s)	455, 485
AfaI	GTAC	3 cut(s)	81, 452, 688
AfiI	CCNNNNNNNGG	4 cut(s)	191, 447, 614, 640
AflII	CTTAAG	2 cut(s)	442, 821
AgsI	TTSAA	5 cut(s)	88, 214, 463, 517, 550
AhdI	GACNNNNNGTC	1 cut(s)	603
AhlI	ACTAGT	1 cut(s)	712
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	6 cut(s)	26, 210, 341, 374, 561, 828
AluI	AGCT	6 cut(s)	26, 210, 341, 374, 561, 828
Alw21I	GWGCWC	2 cut(s)	563, 830
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	3 cut(s)	277, 802, 815
Aor13HI	TCCGGA	2 cut(s)	607, 614
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	31, 341
ApoI	RAATTY	2 cut(s)	455, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	64, 173
AspS9I	GGNCC	2 cut(s)	403, 632
AsuC2I	CCSGG	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	403
AxyI	CCTNAGG	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	563, 830
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbsI	GAAGAC	2 cut(s)	327, 587
Bbv12I	GWGCWC	2 cut(s)	563, 830
BbvCI	CCTCAGC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	18, 328
BccI	CCATC	4 cut(s)	116, 344, 497, 809
BceAI	ACGGC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	590
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	2 cut(s)	167, 713
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	2 cut(s)	65, 174
BfrI	CTTAAG	2 cut(s)	442, 821
BisI	GCNGC	2 cut(s)	32, 342
BlpI	GCTNAGC	1 cut(s)	562
BlsI	GCNGC	2 cut(s)	33, 343
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	403, 632
BmiI	GGNNCC	3 cut(s)	81, 355, 809
BmrFI	CCNGG	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	327, 587
Bpu10I	CCTNAGC	2 cut(s)	174, 407
Bpu1102I	GCTNAGC	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	153, 635
BsaWI	WCCGGW	2 cut(s)	607, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 447, 614, 640
Bse1I	ACTGG	2 cut(s)	297, 338
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	2 cut(s)	607, 614
BseDI	CCNNGG	2 cut(s)	153, 635
BseLI	CCNNNNNNNGG	4 cut(s)	191, 447, 614, 640
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	4 cut(s)	188, 390, 421, 576
BseNI	ACTGG	2 cut(s)	297, 338
BseRI	GAGGAG	2 cut(s)	354, 571
BseXI	GCAGC	2 cut(s)	18, 328
Bsh1236I	CGCG	1 cut(s)	627
Bsh1285I	CGRYCG	2 cut(s)	105, 571
BshFI	GGCC	1 cut(s)	633
BshNI	GGYRCC	1 cut(s)	79
BsiEI	CGRYCG	2 cut(s)	105, 571
BsiHKAI	GWGCWC	2 cut(s)	563, 830
BsiSI	CCGG	3 cut(s)	153, 608, 615
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	191, 447, 614, 640
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	563, 830
Bsp13I	TCCGGA	2 cut(s)	607, 614
Bsp143I	GATC	5 cut(s)	102, 163, 269, 590, 807
Bsp1720I	GCTNAGC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	4 cut(s)	72, 571, 627, 640
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	4 cut(s)	187, 391, 420, 575
BspEI	TCCGGA	2 cut(s)	607, 614
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	3 cut(s)	81, 355, 809
BspPI	GGATC	3 cut(s)	277, 802, 815
BspT107I	GGYRCC	1 cut(s)	79
BspTI	CTTAAG	2 cut(s)	442, 821
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	297, 338
BssECI	CCNNGG	2 cut(s)	153, 635
BssMI	GATC	5 cut(s)	102, 163, 269, 590, 807
BssT1I	CCWWGG	1 cut(s)	635
Bst4CI	ACNGT	2 cut(s)	146, 691
Bst6I	CTCTTC	1 cut(s)	672
BstAFI	CTTAAG	2 cut(s)	442, 821
BstC8I	GCNNGC	2 cut(s)	36, 642
BstDEI	CTNAG	4 cut(s)	174, 399, 407, 562
BstDSI	CCRYGG	1 cut(s)	635
BstFNI	CGCG	1 cut(s)	627
BstH2I	RGCGCY	2 cut(s)	65, 174
BstHHI	GCGC	2 cut(s)	64, 173
BstKTI	GATC	5 cut(s)	105, 166, 272, 593, 810
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	5 cut(s)	102, 163, 269, 590, 807
BstMCI	CGRYCG	2 cut(s)	105, 571
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	18, 328
BstV2I	GAAGAC	2 cut(s)	327, 587
BstX2I	RGATCY	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	807
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	635
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	36, 642
CfoI	GCGC	2 cut(s)	64, 173
Cfr13I	GGNCC	2 cut(s)	403, 632
CseI	GACGC	1 cut(s)	633
Csp6I	GTAC	3 cut(s)	80, 451, 687
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	2 cut(s)	636, 758
CviQI	GTAC	3 cut(s)	80, 451, 687
DdeI	CTNAG	4 cut(s)	174, 399, 407, 562
DpnI	GATC	5 cut(s)	104, 165, 271, 592, 809
DpnII	GATC	5 cut(s)	102, 163, 269, 590, 807
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	672
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	672
Ecl136II	GAGCTC	2 cut(s)	561, 828
Eco130I	CCWWGG	1 cut(s)	635
Eco24I	GRGCYC	2 cut(s)	563, 830
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	403
Eco53kI	GAGCTC	2 cut(s)	561, 828
Eco81I	CCTNAGG	1 cut(s)	399
EcoICRI	GAGCTC	2 cut(s)	561, 828
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	635
EcoT38I	GRGCYC	2 cut(s)	563, 830
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	2 cut(s)	639, 761
FaiI	YATR	8 cut(s)	182, 226, 492, 536, 637, 703, 759, 770
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	635, 757
FauI	CCCGC	1 cut(s)	633
FblI	GTMKAC	3 cut(s)	622, 695, 717
Fnu4HI	GCNGC	2 cut(s)	32, 342
FriOI	GRGCYC	2 cut(s)	563, 830
Fsp4HI	GCNGC	2 cut(s)	32, 342
FspBI	CTAG	2 cut(s)	167, 713
GlaI	GCGC	2 cut(s)	63, 172
GluI	GCNGC	2 cut(s)	32, 342
HaeII	RGCGCY	2 cut(s)	65, 174
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	3 cut(s)	153, 608, 615
HgaI	GACGC	1 cut(s)	633
HhaI	GCGC	2 cut(s)	64, 173
Hin1II	CATG	2 cut(s)	639, 761
Hin6I	GCGC	2 cut(s)	62, 171
HinP1I	GCGC	2 cut(s)	62, 171
HincII	GTYRAC	4 cut(s)	475, 623, 696, 718
HindII	GTYRAC	4 cut(s)	475, 623, 696, 718
HindIII	AAGCTT	2 cut(s)	24, 372
HinfI	GANTC	5 cut(s)	598, 604, 611, 646, 719
HpaII	CCGG	3 cut(s)	153, 608, 615
Hpy166II	GTNNAC	5 cut(s)	142, 475, 623, 696, 718
Hpy188I	TCNGA	5 cut(s)	484, 595, 603, 724, 832
Hpy188III	TCNNGA	7 cut(s)	94, 273, 302, 398, 608, 615, 708
Hpy8I	GTNNAC	5 cut(s)	142, 475, 623, 696, 718
Hpy99I	CGWCG	4 cut(s)	164, 388, 627, 700
HpyAV	CCTTC	3 cut(s)	94, 367, 427
HpyCH4III	ACNGT	2 cut(s)	146, 691
HpyCH4V	TGCA	2 cut(s)	261, 330
HpyF3I	CTNAG	4 cut(s)	174, 399, 407, 562
Hsp92II	CATG	2 cut(s)	639, 761
HspAI	GCGC	2 cut(s)	62, 171
Kpn2I	TCCGGA	2 cut(s)	607, 614
KpnI	GGTACC	1 cut(s)	83
Kzo9I	GATC	5 cut(s)	102, 163, 269, 590, 807
LmnI	GCTCC	4 cut(s)	207, 359, 558, 833
Lsp1109I	GCAGC	2 cut(s)	18, 328
MaeI	CTAG	2 cut(s)	167, 713
MaeIII	GTNAC	2 cut(s)	94, 734
MalI	GATC	5 cut(s)	104, 165, 271, 592, 809
MboI	GATC	5 cut(s)	102, 163, 269, 590, 807
MboII	GAAGA	7 cut(s)	235, 332, 382, 425, 451, 592, 689
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	2 cut(s)	563, 830
MluCI	AATT	6 cut(s)	256, 455, 485, 498, 518, 551
MlyI	GAGTC	5 cut(s)	592, 605, 613, 655, 713
MnlI	CCTC	8 cut(s)	109, 185, 375, 394, 416, 549, 611, 749
MroI	TCCGGA	2 cut(s)	607, 614
MseI	TTAA	5 cut(s)	219, 255, 443, 495, 822
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	2 cut(s)	442, 821
MspI	CCGG	3 cut(s)	153, 608, 615
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	627
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	5 cut(s)	102, 163, 269, 590, 807
NlaIII	CATG	2 cut(s)	639, 761
NlaIV	GGNNCC	3 cut(s)	81, 355, 809
NmuCI	GTSAC	2 cut(s)	94, 734
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PkrI	GCNGC	2 cut(s)	33, 343
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	5 cut(s)	592, 605, 612, 654, 713
PpsI	GAGTC	5 cut(s)	592, 605, 612, 654, 713
PpuMI	RGGWCCY	1 cut(s)	403
Psp124BI	GAGCTC	2 cut(s)	563, 830
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	81, 355, 809
PspPI	GGNCC	2 cut(s)	403, 632
PspPPI	RGGWCCY	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	807
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	3 cut(s)	81, 452, 688
RsaNI	GTAC	3 cut(s)	80, 451, 687
SacI	GAGCTC	2 cut(s)	563, 830
SalI	GTCGAC	3 cut(s)	621, 694, 716
SaqAI	TTAA	5 cut(s)	219, 255, 443, 495, 822
SatI	GCNGC	2 cut(s)	32, 342
Sau3AI	GATC	5 cut(s)	102, 163, 269, 590, 807
Sau96I	GGNCC	2 cut(s)	403, 632
SchI	GAGTC	5 cut(s)	592, 605, 613, 655, 713
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	563, 830
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	442, 821
SmoI	CTYRAG	2 cut(s)	442, 821
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	6 cut(s)	256, 455, 485, 498, 518, 551
SsiI	CCGC	4 cut(s)	72, 571, 627, 640
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	167, 713
SstI	GAGCTC	2 cut(s)	563, 830
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	2 cut(s)	146, 691
TaqI	TCGA	5 cut(s)	101, 105, 622, 695, 717
TasI	AATT	6 cut(s)	256, 455, 485, 498, 518, 551
Tru1I	TTAA	5 cut(s)	219, 255, 443, 495, 822
Tru9I	TTAA	5 cut(s)	219, 255, 443, 495, 822
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	94, 734
TseI	GCWGC	2 cut(s)	31, 341
Tsp45I	GTSAC	2 cut(s)	94, 734
TspDTI	ATGAA	3 cut(s)	34, 240, 479
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	2 cut(s)	442, 821
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	455, 485
XmiI	GTMKAC	3 cut(s)	622, 695, 717
XspI	CTAG	2 cut(s)	167, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.