Rh4DG067500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012568
Physical Location & Seq
Reverse (-)
10099966 .. 10100340
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG067500.1

Sequence Viewer

Length: 375 bp
ATGATCGATCAGCTCTGCTATCAAGTTTTATTCCTTGTCTTTTCCATAGCTTTTTGGGGGGCACCTGCAATAGTCACCAGCACAGAACAAATCATGATATCCGGATTAACATTGTGGCACAAAACTACTGTCTTAATCAACAACAATGTGGGTGACGGGCTAAACCTCTATATCCACTGTAAGTCTAAGGACGACGAGCTAGGCACTCATTTCATACCAAATGGTGGTAATTATTCATGGCATTTCAGAGTCAATCTCTGGAGAACGACGCTTTTGTTTTGCGGATTTAACTGGCAAGACAGATCAGGAGTATTTGATATATACAGAGCAGTCAGAGCTGATAAGGATAAAGATGTTTGGAGTGCAACTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

124

Amino Acids

14.21

Weight (kDa)

6.38

Isoelectric Point (pI)

19.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 43 - 117 6.9e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 101
AciI CCGC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 13, 50, 199, 338
AluI AGCT 4 cut(s) 13, 50, 199, 338
Aor13HI TCCGGA 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AsuHPI GGTGA 2 cut(s) 67, 164
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 61
BfaI CTAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 1 cut(s) 280
Bsa29I ATCGAT 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 296, 373
BseAI TCCGGA 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 296, 373
BseSI GKGCMC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 6
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 101
Bsp143I GATC 3 cut(s) 3, 7, 302
BspACI CCGC 1 cut(s) 282
BspDI ATCGAT 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 101
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 296, 373
BssMI GATC 3 cut(s) 3, 7, 302
Bst4CI ACNGT 2 cut(s) 130, 179
BstDEI CTNAG 1 cut(s) 186
BstKTI GATC 3 cut(s) 6, 10, 305
BstMBI GATC 3 cut(s) 3, 7, 302
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 64
Bsu15I ATCGAT 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 73
CciI TCATGA 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 277
CviAII CATG 2 cut(s) 94, 237
CviJI RGCY 5 cut(s) 13, 50, 160, 199, 338
CviKI_1 RGCY 5 cut(s) 13, 50, 160, 199, 338
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 5, 9, 304
DpnII GATC 3 cut(s) 3, 7, 302
Eco32I GATATC 1 cut(s) 99
EcoRV GATATC 1 cut(s) 99
FaeI CATG 2 cut(s) 97, 240
FaiI YATR 7 cut(s) 47, 95, 171, 215, 238, 320, 322
FatI CATG 2 cut(s) 93, 236
FspBI CTAG 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 280
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 277
Hin1II CATG 2 cut(s) 97, 240
HinfI GANTC 1 cut(s) 249
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 67, 164
Hpy188I TCNGA 2 cut(s) 248, 335
Hpy188III TCNNGA 4 cut(s) 94, 102, 259, 306
Hpy99I CGWCG 2 cut(s) 197, 271
HpyCH4III ACNGT 2 cut(s) 130, 179
HpyCH4V TGCA 2 cut(s) 68, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 2 cut(s) 97, 240
Kpn2I TCCGGA 1 cut(s) 101
Kzo9I GATC 3 cut(s) 3, 7, 302
LpnPI CCDG 7 cut(s) 78, 91, 115, 244, 277, 291, 354
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 73, 152
MalI GATC 3 cut(s) 5, 9, 304
MboI GATC 3 cut(s) 3, 7, 302
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 1 cut(s) 176
MroI TCCGGA 1 cut(s) 101
MseI TTAA 3 cut(s) 107, 134, 288
MspI CCGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 3 cut(s) 3, 7, 302
NlaIII CATG 2 cut(s) 97, 240
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 73, 152
PagI TCATGA 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 224
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 107, 134, 288
Sau3AI GATC 3 cut(s) 3, 7, 302
SchI GAGTC 1 cut(s) 258
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 15, 52, 67, 168, 201, 340
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 130, 179
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 229
Tru1I TTAA 3 cut(s) 107, 134, 288
Tru9I TTAA 3 cut(s) 107, 134, 288
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 2 cut(s) 73, 152
Tsp45I GTSAC 2 cut(s) 73, 152
TspDTI ATGAA 2 cut(s) 202, 225
TspRI CASTG 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 224
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.