RLG00000018688

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012568
Physical Location & Seq
Reverse (-)
33966038 .. 33966537
500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018688

Sequence Viewer

Length: 468 bp
ATGGGTGGCTTAAAATCCCACAGCATACTAGTTCTTTCCACACTGGTAATTTCAGTCGTACTGCTAGACCAATCCTTAGTATTGGTTTCAGGATTGGACGCCAGGAAGATCACTGTTCATTTGGAAAATCACCTTTTCCCAACAAATCAGGAAGTTACTGTTCACTGCCAATCCGGAGACGACGATCTGGGTTTTCACGAACTTCCTTATCTAAGTTCTTACGAGTTCTCGTTCAAGAACAATGTGGTAGACACAACCCTCTTCTTTTGTCACTTTGAGTGGCTAAACACTACGACATCGACATTTCAAAATGTGGCTGCTACGTATGACATCTACAAGAGCGCGAGAGATCAGGGACGGTGCAACACCTTATGCAACTGGAGGATTCAAGAAGAAGGCCTCTTTTCATACAACGACAAGAACCAATATTGGGATGGTCTCTACACATGGCCTGGCCACAGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

156

Amino Acids

17.73

Weight (kDa)

5.15

Isoelectric Point (pI)

17.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 38 - 150 1.4e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 235, 308, 389
AhlI ACTAGT 1 cut(s) 28
AjnI CCWGG 2 cut(s) 101, 451
Alw26I GTCTC 2 cut(s) 171, 443
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 3 cut(s) 397, 449, 454
ApeKI GCWGC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 122
BalI TGGCCA 1 cut(s) 456
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 428
BciT130I CCWGG 2 cut(s) 103, 453
BcoDI GTCTC 2 cut(s) 171, 443
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 2 cut(s) 29, 65
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 2 cut(s) 103, 453
BmrFI CCNGG 2 cut(s) 103, 453
BpmI CTGGAG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 48, 383
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 2 cut(s) 103, 453
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 430
BseNI ACTGG 2 cut(s) 48, 383
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 3 cut(s) 399, 451, 456
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 171, 443
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 3 cut(s) 399, 451, 456
Bso31I GGTCTC 1 cut(s) 443
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 3 cut(s) 108, 184, 349
BspANI GGCC 3 cut(s) 399, 451, 456
BspEI TCCGGA 1 cut(s) 173
BspFNI CGCG 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 48, 383
BssMI GATC 3 cut(s) 108, 184, 349
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 103, 453
Bst4CI ACNGT 4 cut(s) 115, 160, 360, 461
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 76, 212
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 3 cut(s) 111, 187, 352
BstMAI GTCTC 2 cut(s) 171, 443
BstMBI GATC 3 cut(s) 108, 184, 349
BstNI CCWGG 2 cut(s) 103, 453
BstSCI CCNGG 2 cut(s) 101, 451
BstSNI TACGTA 1 cut(s) 324
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 304
BsuRI GGCC 3 cut(s) 399, 451, 456
BtsCI GGATG 1 cut(s) 439
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 3 cut(s) 41, 111, 163
CfoI GCGC 1 cut(s) 344
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 447
CviJI RGCY 6 cut(s) 9, 283, 317, 399, 451, 456
CviKI_1 RGCY 6 cut(s) 9, 283, 317, 399, 451, 456
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 76, 212
DpnI GATC 3 cut(s) 110, 186, 351
DpnII GATC 3 cut(s) 108, 184, 349
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco105I TACGTA 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 101, 451
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 1 cut(s) 450
FaiI YATR 7 cut(s) 26, 327, 373, 409, 448, 464, 466
FaqI GGGAC 1 cut(s) 369
FatI CATG 1 cut(s) 446
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 29, 65
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 3 cut(s) 399, 451, 456
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 344
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 450
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 163, 250
Hpy188III TCNNGA 6 cut(s) 90, 149, 174, 197, 235, 389
Hpy8I GTNNAC 2 cut(s) 163, 250
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 4 cut(s) 115, 160, 360, 461
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 363, 375
HpyF3I CTNAG 2 cut(s) 76, 212
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 450
HspAI GCGC 1 cut(s) 342
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 3 cut(s) 108, 184, 349
Lsp1109I GCAGC 1 cut(s) 304
MaeI CTAG 2 cut(s) 29, 65
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 154, 269
MalI GATC 3 cut(s) 110, 186, 351
MboI GATC 3 cut(s) 108, 184, 349
MboII GAAGA 3 cut(s) 118, 253, 404
MlsI TGGCCA 1 cut(s) 456
MluCI AATT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 456
MnlI CCTC 3 cut(s) 269, 375, 410
Mox20I TGGCCA 1 cut(s) 456
MroI TCCGGA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 456
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 456
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 103, 453
MvaI CCWGG 2 cut(s) 103, 453
MvnI CGCG 1 cut(s) 344
NdeII GATC 3 cut(s) 108, 184, 349
NlaIII CATG 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 269
PceI AGGCCT 1 cut(s) 399
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 101, 451
PspGI CCWGG 2 cut(s) 101, 451
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 108, 184, 349
ScrFI CCNGG 2 cut(s) 103, 453
SetI ASST 3 cut(s) 135, 326, 371
SnaBI TACGTA 1 cut(s) 324
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 399
SspI AATATT 1 cut(s) 428
SspMI CTAG 2 cut(s) 29, 65
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 101, 451
TaaI ACNGT 4 cut(s) 115, 160, 360, 461
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 299
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 3 cut(s) 48, 118, 170
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 107, 396
TspRI CASTG 3 cut(s) 48, 118, 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 29, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.