RLG00000009504

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012568
Physical Location & Seq
Reverse (-)
53713718 .. 53714135
418 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009504

Sequence Viewer

Length: 375 bp
ATGGGTGTAATATTTCGCTACCAAGCTTTGCTGCTCGCCTTTTTCATTGCTTCCTTTGTGGCGCTTACAACTGCTGTGGTACCCTTCAAAGTCGTGACCTCGATCGACAACACATTACCTGATGGGCAAGTACTCAATGTCCACTGTAAATCCGGGGACGACGATCTAGGCGCTCAGGTCATACCCAATGGAGGTCATTACGAATGGAGCTTCAAAGTTAATACGGATCAGGAACATTTGACATCTACAGAGCCAGTCGGGATATCATTAGATGTGAAGACAAGTGCAACTGGAAAGCTGCCCAAGACGGCGTGCATGGCTTCAACAAAGACAATCAGGATGACTTACTGTACAAGTGGGAGGCACCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

125

Amino Acids

13.46

Weight (kDa)

7.77

Isoelectric Point (pI)

23.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 35 - 75 1.9e-10 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 79, 363
AclWI GGATC 1 cut(s) 234
AfaI GTAC 3 cut(s) 81, 132, 352
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 88, 214, 324
AluBI AGCT 3 cut(s) 26, 210, 298
AluI AGCT 3 cut(s) 26, 210, 298
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 31, 298
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 2 cut(s) 64, 173
AsuC2I CCSGG 1 cut(s) 154
BanI GGYRCC 2 cut(s) 79, 363
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 18, 285
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 324
BcnI CCSGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 2 cut(s) 65, 174
BisI GCNGC 2 cut(s) 32, 299
BlsI GCNGC 2 cut(s) 33, 300
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 81, 365
BmrFI CCNGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 254, 295
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 2 cut(s) 254, 295
BseXI GCAGC 2 cut(s) 18, 285
Bsh1285I CGRYCG 1 cut(s) 105
BshNI GGYRCC 2 cut(s) 79, 363
BsiEI CGRYCG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 350
Bsp143I GATC 3 cut(s) 102, 163, 226
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 81, 365
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 2 cut(s) 79, 363
BsrDI GCAATG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 350
BsrI ACTGG 2 cut(s) 254, 295
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 102, 163, 226
Bst4CI ACNGT 2 cut(s) 146, 350
BstAUI TGTACA 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 36, 313
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 345
BstH2I RGCGCY 2 cut(s) 65, 174
BstHHI GCGC 2 cut(s) 64, 173
BstKTI GATC 3 cut(s) 105, 166, 229
BstMBI GATC 3 cut(s) 102, 163, 226
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 18, 285
BstV2I GAAGAC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 36, 313
CfoI GCGC 2 cut(s) 64, 173
Csp6I GTAC 3 cut(s) 80, 131, 351
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 1 cut(s) 316
CviJI RGCY 5 cut(s) 26, 210, 253, 298, 320
CviKI_1 RGCY 5 cut(s) 26, 210, 253, 298, 320
CviQI GTAC 3 cut(s) 80, 131, 351
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 104, 165, 228
DpnII GATC 3 cut(s) 102, 163, 226
Eco32I GATATC 1 cut(s) 264
EcoRV GATATC 1 cut(s) 264
FaeI CATG 1 cut(s) 319
FaiI YATR 2 cut(s) 182, 317
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 32, 299
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 32, 299
FspBI CTAG 1 cut(s) 167
GlaI GCGC 2 cut(s) 63, 172
GluI GCNGC 2 cut(s) 32, 299
HaeII RGCGCY 2 cut(s) 65, 174
HapII CCGG 1 cut(s) 153
HhaI GCGC 2 cut(s) 64, 173
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 2 cut(s) 62, 171
HinP1I GCGC 2 cut(s) 62, 171
HindIII AAGCTT 1 cut(s) 24
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 94, 230, 259, 337
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 146, 350
HpyCH4V TGCA 2 cut(s) 287, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 2 cut(s) 62, 171
KpnI GGTACC 1 cut(s) 83
Kzo9I GATC 3 cut(s) 102, 163, 226
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 132, 161, 166, 215, 267, 276, 322
Lsp1109I GCAGC 2 cut(s) 18, 285
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 94
MalI GATC 3 cut(s) 104, 165, 228
MboI GATC 3 cut(s) 102, 163, 226
MboII GAAGA 1 cut(s) 289
MnlI CCTC 3 cut(s) 109, 185, 354
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 154
NdeII GATC 3 cut(s) 102, 163, 226
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 81, 365
NmuCI GTSAC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 33, 300
Ple19I CGATCG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 81, 365
PvuI CGATCG 1 cut(s) 105
RsaI GTAC 3 cut(s) 81, 132, 352
RsaNI GTAC 3 cut(s) 80, 131, 351
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 32, 299
Sau3AI GATC 3 cut(s) 102, 163, 226
ScaI AGTACT 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 154
SetI ASST 7 cut(s) 28, 101, 121, 180, 196, 212, 300
SfcI CTRYAG 1 cut(s) 246
SspI AATATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 146, 350
TaqI TCGA 2 cut(s) 101, 105
TatI WGTACW 2 cut(s) 130, 350
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 31, 298
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 149
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.