MD06G1061000.v1.1

Domain of unknown function (DUF4535)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007078
Physical Location & Seq
Reverse (-)
9566128 .. 9566873
746 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1061000.v1.1.491

Sequence Viewer

Length: 177 bp
ATGGGGATAATCAGAAGCAGCTTCTCGTTTCTAATGGGCACAGTGTTCGGCGTCTACGTTGCCCAAAACTACGACGTTCCGAATGTCCAGAAGCTCTCCACAACTGGCCTTCTGATCGCCAAGCACATCGAGGAGAACTACCGCAAGCCCAAGAAGAAGGAGGAGGACGACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4535

Protein Analysis

59

Amino Acids

6.64

Weight (kDa)

8.05

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4535 PF15054 6 - 50 1.1e-24 Domain of unknown function (DUF4535)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 51
AluBI AGCT 2 cut(s) 21, 94
AluI AGCT 2 cut(s) 21, 94
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 18
BaeGI GKGCMC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BfaI CTAG 1 cut(s) 175
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 146, 176
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 108
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 108
BsrI ACTGG 1 cut(s) 109
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 146
CseI GACGC 1 cut(s) 40
CviJI RGCY 4 cut(s) 21, 94, 108, 148
CviKI_1 RGCY 4 cut(s) 21, 94, 108, 148
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 175
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 14, 81, 114
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 119, 151
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 57, 75
HpySE526I ACGT 2 cut(s) 57, 75
Hsp92I GRCGYC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 2 cut(s) 90, 101
Lsp1109I GCAGC 1 cut(s) 30
MaeI CTAG 1 cut(s) 175
MaeII ACGT 2 cut(s) 57, 75
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 41
MnlI CCTC 3 cut(s) 124, 154, 157
NdeII GATC 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 1 cut(s) 20
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 41
SetI ASST 4 cut(s) 23, 60, 78, 96
SgeI CNNG 7 cut(s) 37, 100, 117, 133, 142, 157, 163
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 60, 78
TaqI TCGA 1 cut(s) 129
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 18
TspRI CASTG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.