Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007078

Physical Location & Seq

Genomic Coordinates Forward (+)

14313026 .. 14314022

Gene Structure 997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTGGGCTCGGGCTTTTAGTCGGATTGGGTGACGGTGGAGTCCAGGCGGTAATTCTGACTCGAGGTCAGACTATACAGGGATGGCGGTTTTCGTCAAGGGCCTACGGCGGCGTCTTCGTCACTAGATTTCCAGGACTAGTGGCGGCGGTGGCTTTGGTGGATTCTGGTTTGATCGTTTTTGGAGGCACGGCGTTAGTGGTCTGGGCGGATTGCTATGGTGGCGTGGCTATGGAGGGTCGGGTCGGATTGTGGAGGCGACGTGGCTTGGTGGTTCTTGGCGGTCTTCGTGGGGGTAGGAGCGGCAGCTGGTTTCTTGATGGTGGTGGTTGGTGGCCGTGCGTGTGGCTCGGGAGTGGGATGATGTTGTTTTGGGCTCGGGTCACCCTGGTCCGCTGGCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.33

Weight (kDa)

11.33

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35736 AT2G35736
malus_domestica	MD06G1061000.v1.1
prunus_persica	Prupe.5G071800_v2.0.a1 Prupe.5G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468271 RchiOBHm_Chr7g0202941
rosa_multiflora	Rmu_sc0000368.1_g000041 Rmu_sc0007263.1_g000001 Rmu_sc0008159.1_g000013
rosa_roxburghii	Rroxscaffold_3G00254170 Rroxscaffold_4G00297280 Rroxscaffold_7G00210410
rosa_samantha	Rh3AG016200 Rh3CG015500 Rh3DG016700 Rh3DG207700 Rh3DG300300 Rh5CG480700 Rh6AG212000 Rh7AG202000 Rh7BG202100 Rh7DG208900
rosa_wichuraiana	Rw2G024660 Rw7G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	303
AciI	CCGC	9 cut(s)	50, 88, 111, 146, 149, 209, 282, 303, 394
AcoI	YGGCCR	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	114
AhdI	GACNNNNNGTC	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	139
AjiI	CACGTC	1 cut(s)	263
AjnI	CCWGG	3 cut(s)	45, 133, 387
AluBI	AGCT	1 cut(s)	309
AluI	AGCT	1 cut(s)	309
Ama87I	CYCGRG	4 cut(s)	11, 63, 350, 378
AoxI	GGCC	3 cut(s)	102, 335, 398
ApeKI	GCWGC	1 cut(s)	306
AspS9I	GGNCC	3 cut(s)	102, 391, 399
AsuHPI	GGTGA	2 cut(s)	44, 376
AvaI	CYCGRG	4 cut(s)	11, 63, 350, 378
AvaII	GGWCC	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	12, 379
BbsI	GAAGAC	2 cut(s)	109, 278
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	78, 314
BceAI	ACGGC	3 cut(s)	124, 207, 322
BciT130I	CCWGG	3 cut(s)	47, 135, 389
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	126, 140
BisI	GCNGC	4 cut(s)	112, 147, 304, 307
BlsI	GCNGC	4 cut(s)	113, 148, 305, 308
Bme1390I	CCNGG	3 cut(s)	47, 135, 389
Bme18I	GGWCC	1 cut(s)	391
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmeT110I	CYCGRG	4 cut(s)	11, 63, 350, 378
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	102, 391, 399
BmrFI	CCNGG	3 cut(s)	47, 135, 389
BpiI	GAAGAC	2 cut(s)	109, 278
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
BseBI	CCWGG	3 cut(s)	47, 135, 389
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	89, 366
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	3 cut(s)	104, 337, 400
BsiHKCI	CYCGRG	4 cut(s)	11, 63, 350, 378
BsnI	GGCC	3 cut(s)	104, 337, 400
BsoBI	CYCGRG	4 cut(s)	11, 63, 350, 378
Bsp1286I	GDGCHC	2 cut(s)	12, 379
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	9 cut(s)	50, 88, 111, 146, 149, 209, 282, 303, 394
BspANI	GGCC	3 cut(s)	104, 337, 400
BsrBI	CCGCTC	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	47, 135, 389
Bst4CI	ACNGT	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	89, 366
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 222
BstNI	CCWGG	3 cut(s)	47, 135, 389
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	3 cut(s)	45, 133, 387
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	2 cut(s)	109, 278
BsuRI	GGCC	3 cut(s)	104, 337, 400
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	89, 366
Cac8I	GCNNGC	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	102, 391, 399
CseI	GACGC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DrdI	GACNNNNNNGTC	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	66
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	335
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	12, 379
Eco47I	GGWCC	1 cut(s)	391
Eco88I	CYCGRG	4 cut(s)	11, 63, 350, 378
Eco91I	GGTNACC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	3 cut(s)	45, 133, 387
EcoT38I	GRGCYC	2 cut(s)	12, 379
FaiI	YATR	3 cut(s)	77, 219, 233
Fnu4HI	GCNGC	4 cut(s)	112, 147, 304, 307
FokI	GGATG	2 cut(s)	96, 373
FriOI	GRGCYC	2 cut(s)	12, 379
Fsp4HI	GCNGC	4 cut(s)	112, 147, 304, 307
FspBI	CTAG	2 cut(s)	126, 140
GluI	GCNGC	4 cut(s)	112, 147, 304, 307
HaeIII	GGCC	3 cut(s)	104, 337, 400
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	114
HinfI	GANTC	3 cut(s)	42, 61, 164
HphI	GGTGA	2 cut(s)	44, 376
Hpy188I	TCNGA	4 cut(s)	26, 60, 72, 248
Hpy188III	TCNNGA	2 cut(s)	317, 352
Hpy99I	CGWCG	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 222
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	300
Lsp1109I	GCAGC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	126, 140
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	3 cut(s)	32, 121, 382
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	109, 278
MhlI	GDGCHC	2 cut(s)	12, 379
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	51, 55
MmeI	TCCRAC	2 cut(s)	4, 226
MnlI	CCTC	4 cut(s)	59, 179, 229, 249
MspA1I	CMGCKG	2 cut(s)	309, 396
MspR9I	CCNGG	3 cut(s)	47, 135, 389
MvaI	CCWGG	3 cut(s)	47, 135, 389
MwoI	GCNNNNNNNGC	2 cut(s)	152, 222
NdeII	GATC	1 cut(s)	174
NmuCI	GTSAC	3 cut(s)	32, 121, 382
PaeR7I	CTCGAG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	113, 148, 305, 308
PleI	GAGTC	2 cut(s)	50, 55
PpsI	GAGTC	2 cut(s)	50, 55
Psp6I	CCWGG	3 cut(s)	45, 133, 387
PspEI	GGTNACC	1 cut(s)	382
PspGI	CCWGG	3 cut(s)	45, 133, 387
PspPI	GGNCC	3 cut(s)	102, 391, 399
PspXI	VCTCGAGB	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	309
SatI	GCNGC	4 cut(s)	112, 147, 304, 307
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	102, 391, 399
SchI	GAGTC	2 cut(s)	51, 55
ScrFI	CCNGG	3 cut(s)	47, 135, 389
SduI	GDGCHC	2 cut(s)	12, 379
SetI	ASST	3 cut(s)	70, 265, 311
Sfr274I	CTCGAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	9 cut(s)	50, 88, 111, 146, 149, 209, 282, 303, 394
SspMI	CTAG	2 cut(s)	126, 140
StyD4I	CCNGG	3 cut(s)	45, 133, 387
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	54
TauI	GCSGC	3 cut(s)	114, 149, 306
TfiI	GAWTC	1 cut(s)	164
TseFI	GTSAC	3 cut(s)	32, 121, 382
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	3 cut(s)	32, 121, 382
VpaK11BI	GGWCC	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	2 cut(s)	126, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.