Rh6AG212000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007078
Physical Location & Seq
Reverse (-)
37790457 .. 37794932
4476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG212000.1

Sequence Viewer

Length: 870 bp
ATGCTTGATTCAGTTAACTTTGTGCTCTACAATTCTGATTCAAACATCAAGTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTTGAACATGAATCACGCGAGTGGAAGGTTTCAGGAACCTTCTTGTGTATGTCTCCCTGGTTTCACTTTCATCGACGAGGGCCAAAGATATTTAGGCTGCAACAGAAACTTGAGGACAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTTTATTGTTGATGTGGATAAAATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGTTTGTAAAGATGACTATTTGATGGATTCTAACTGTGAAGCTGCAGTATTTAGGGACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAATATTTGGAAGAACTCCCCAAACCGATGTGGTGACAACCTTTGTCAAAAAGGTTACGAATGATCAGAGTTCAGGGACAAAAAGGGAGAGCGAACACAGCTGCAACCAGCAACCCGTCTCCGCCAGTCCGCCTCTCCGGTCTCCGAGCTCCGCCTTCAGGCTCCAGGTAGAAGAGAAACTTGAGTCTGGACAGGGGAAGACAACTTTCCGCCGTTTCTTTTCTAGATTTTGTACACCAATCTTTTTGGAGTCATTCGTTCTAACATTTTTAGCTGAGTGGGGAGATCGTAGCCAAATAGCGACAATCGCTATATTGAGGAAAATCTGTTGGTACTTGGTTCTGTCACCATACGATCCAATGCAGTCAAGCCTTCTTAATTCTACCCTGGAGGATAAGAATCTTTCAGAGAGTCCAAATTTTAGGAAATCTTGA

Protein Analysis

289

Amino Acids

32.79

Weight (kDa)

6.73

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDT1 PF01169 229 - 250 5e-06 Divalent cation/proton antiporter GDT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 558, 566, 588, 646
AclWI GGATC 1 cut(s) 785
AcsI RAATTY 1 cut(s) 853
AcuI CTGAAG 1 cut(s) 577
AfaI GTAC 2 cut(s) 670, 770
AfiI CCNNNNNNNGG 1 cut(s) 594
AgsI TTSAA 2 cut(s) 42, 136
AjnI CCWGG 3 cut(s) 187, 600, 822
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 6 cut(s) 118, 392, 430, 537, 585, 710
AluI AGCT 6 cut(s) 118, 392, 430, 537, 585, 710
Alw21I GWGCWC 2 cut(s) 27, 587
Alw26I GTCTC 3 cut(s) 188, 559, 582
AlwI GGATC 1 cut(s) 785
AlwNI CAGNNNCTG 1 cut(s) 100
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 4 cut(s) 94, 228, 392, 537
ApoI RAATTY 1 cut(s) 853
AspS9I GGNCC 2 cut(s) 211, 406
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 275, 481, 774
AvaII GGWCC 1 cut(s) 406
BaeI ACNNNNGTAYC 4 cut(s) 69, 69, 102, 102
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 641
Bbv12I GWGCWC 2 cut(s) 27, 587
BbvI GCAGC 4 cut(s) 106, 215, 379, 524
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 633
BciT130I CCWGG 3 cut(s) 189, 602, 824
BciVI GTATCC 1 cut(s) 97
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 188, 559, 582
BfaI CTAG 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 393
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 4 cut(s) 95, 229, 393, 538
BlsI GCNGC 4 cut(s) 96, 230, 394, 539
Bme1390I CCNGG 4 cut(s) 91, 189, 602, 824
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 211, 406
BmiI GGNNCC 3 cut(s) 168, 407, 599
BmrFI CCNGG 4 cut(s) 91, 189, 602, 824
BpiI GAAGAC 1 cut(s) 641
BpmI CTGGAG 2 cut(s) 584, 845
BpuEI CTTGAG 2 cut(s) 262, 638
BpuMI CCSGG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 834
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 2 cut(s) 187, 822
BsaWI WCCGGW 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse1I ACTGG 1 cut(s) 561
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 3 cut(s) 189, 602, 824
BseDI CCNNGG 2 cut(s) 187, 822
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 4 cut(s) 106, 215, 379, 524
BsgI GTGCAG 1 cut(s) 436
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 2 cut(s) 27, 587
BsiSI CCGG 2 cut(s) 90, 574
BslFI GGGAC 2 cut(s) 419, 526
BslI CCNNNNNNNGG 1 cut(s) 594
BsmAI GTCTC 3 cut(s) 188, 559, 582
BsmBI CGTCTC 1 cut(s) 559
BsmFI GGGAC 2 cut(s) 419, 526
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 27, 587
Bsp1407I TGTACA 1 cut(s) 668
Bsp143I GATC 3 cut(s) 499, 721, 790
BspACI CCGC 4 cut(s) 558, 566, 588, 646
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 703
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 168, 407, 599
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 582
BsrGI TGTACA 1 cut(s) 668
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 187, 822
BssMI GATC 3 cut(s) 499, 721, 790
Bst2UI CCWGG 3 cut(s) 189, 602, 824
Bst4CI ACNGT 3 cut(s) 250, 352, 386
Bst6I CTCTTC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 668
BstDEI CTNAG 1 cut(s) 711
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 3 cut(s) 502, 724, 793
BstMAI GTCTC 3 cut(s) 188, 559, 582
BstMBI GATC 3 cut(s) 499, 721, 790
BstMWI GCNNNNNNNGC 2 cut(s) 534, 743
BstNI CCWGG 3 cut(s) 189, 602, 824
BstSCI CCNGG 4 cut(s) 89, 187, 600, 822
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 4 cut(s) 106, 215, 379, 524
BstV2I GAAGAC 1 cut(s) 641
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 419
CaiI CAGNNNCTG 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 211, 406
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 669, 769
CviAII CATG 1 cut(s) 139
CviQI GTAC 2 cut(s) 669, 769
DdeI CTNAG 1 cut(s) 711
DpnI GATC 3 cut(s) 501, 723, 792
DpnII GATC 3 cut(s) 499, 721, 790
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 4 cut(s) 547, 555, 577, 635
Ecl136II GAGCTC 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 577
EcoICRI GAGCTC 1 cut(s) 585
EcoRII CCWGG 3 cut(s) 187, 600, 822
EcoT38I GRGCYC 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 559
FaeI CATG 1 cut(s) 142
FaiI YATR 6 cut(s) 140, 181, 280, 325, 749, 787
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FaqI GGGAC 2 cut(s) 419, 526
FatI CATG 1 cut(s) 138
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 4 cut(s) 95, 229, 393, 538
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 95, 229, 393, 538
FspBI CTAG 1 cut(s) 660
GluI GCNGC 4 cut(s) 95, 229, 393, 538
GsuI CTGGAG 2 cut(s) 584, 845
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 90, 574
HgaI GACGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 8 cut(s) 8, 38, 142, 377, 620, 686, 835, 847
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 90, 574
HphI GGTGA 3 cut(s) 275, 481, 774
Hpy166II GTNNAC 2 cut(s) 16, 671
Hpy188I TCNGA 4 cut(s) 37, 504, 582, 844
Hpy188III TCNNGA 5 cut(s) 133, 164, 624, 660, 867
Hpy8I GTNNAC 2 cut(s) 16, 671
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 150, 180, 601, 818
HpyCH4III ACNGT 3 cut(s) 250, 352, 386
HpyCH4V TGCA 6 cut(s) 231, 258, 395, 417, 540, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 534, 743
HpyF3I CTNAG 1 cut(s) 711
Hsp92II CATG 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 3 cut(s) 499, 721, 790
LmnI GCTCC 3 cut(s) 435, 590, 603
Lsp1109I GCAGC 4 cut(s) 106, 215, 379, 524
MaeI CTAG 1 cut(s) 660
MaeIII GTNAC 3 cut(s) 469, 490, 780
MalI GATC 3 cut(s) 501, 723, 792
MboI GATC 3 cut(s) 499, 721, 790
MboII GAAGA 3 cut(s) 459, 620, 646
MhlI GDGCHC 2 cut(s) 27, 587
MluCI AATT 3 cut(s) 31, 814, 853
MlyI GAGTC 3 cut(s) 629, 695, 856
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 7 cut(s) 136, 202, 237, 444, 579, 747, 820
MseI TTAA 2 cut(s) 15, 813
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 537
MspI CCGG 2 cut(s) 90, 574
MspR9I CCNGG 4 cut(s) 91, 189, 602, 824
MvaI CCWGG 3 cut(s) 189, 602, 824
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 534, 743
NciI CCSGG 1 cut(s) 91
NdeII GATC 3 cut(s) 499, 721, 790
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 3 cut(s) 168, 407, 599
NmuCI GTSAC 2 cut(s) 469, 780
OliI CACNNNNGTG 1 cut(s) 150
PfeI GAWTC 5 cut(s) 8, 38, 142, 377, 835
PkrI GCNGC 4 cut(s) 96, 230, 394, 539
PleI GAGTC 3 cut(s) 628, 694, 855
PpsI GAGTC 3 cut(s) 628, 694, 855
Psp124BI GAGCTC 1 cut(s) 587
Psp6I CCWGG 3 cut(s) 187, 600, 822
PspGI CCWGG 3 cut(s) 187, 600, 822
PspN4I GGNNCC 3 cut(s) 168, 407, 599
PspPI GGNCC 2 cut(s) 211, 406
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 537
RsaI GTAC 2 cut(s) 670, 770
RsaNI GTAC 2 cut(s) 669, 769
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 2 cut(s) 15, 813
SatI GCNGC 4 cut(s) 95, 229, 393, 538
Sau3AI GATC 3 cut(s) 499, 721, 790
Sau96I GGNCC 2 cut(s) 211, 406
SchI GAGTC 3 cut(s) 629, 695, 856
ScrFI CCNGG 4 cut(s) 91, 189, 602, 824
SduI GDGCHC 2 cut(s) 27, 587
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 241, 617
SmoI CTYRAG 2 cut(s) 241, 617
Sse9I AATT 3 cut(s) 31, 814, 853
SsiI CCGC 4 cut(s) 558, 566, 588, 646
SspI AATATT 1 cut(s) 441
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 4 cut(s) 89, 187, 600, 822
TaaI ACNGT 3 cut(s) 250, 352, 386
TaqI TCGA 1 cut(s) 204
TasI AATT 3 cut(s) 31, 814, 853
TatI WGTACW 1 cut(s) 668
TfiI GAWTC 5 cut(s) 8, 38, 142, 377, 835
Tru1I TTAA 2 cut(s) 15, 813
Tru9I TTAA 2 cut(s) 15, 813
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 2 cut(s) 469, 780
TseI GCWGC 4 cut(s) 94, 228, 392, 537
Tsp45I GTSAC 2 cut(s) 469, 780
TspDTI ATGAA 4 cut(s) 155, 190, 267, 285
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 853
XbaI TCTAGA 1 cut(s) 659
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.