Rh7BG202100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007078
Physical Location & Seq
Forward (+)
16837495 .. 16838323
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG202100.1

Sequence Viewer

Length: 183 bp
ATGGGGTTTGTCAGAAGCACCTTCTCGTTTCTGACCGGCACGGTGGTCGGAGTCTACGTCGCTCAGAATTACAACGTCCCCAACATTGATAAGCTCGCCAAGACCTTCCTCCTGATTGGGAAGCACCTCGAGGAGACTTACCGGAAGCCCAAGAAGAGGGACAGCGACGAGAGCGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4535

Protein Analysis

60

Amino Acids

6.85

Weight (kDa)

9.1

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4535 PF15054 6 - 50 8.7e-22 Domain of unknown function (DUF4535)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 128
AccI GTMKAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 156
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 181
BglII AGATCT 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 36, 142
BslFI GGGAC 2 cut(s) 62, 173
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 2 cut(s) 62, 173
BsoBI CYCGRG 1 cut(s) 128
Bsp143I GATC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssMI GATC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 35
CviJI RGCY 2 cut(s) 94, 148
CviKI_1 RGCY 2 cut(s) 94, 148
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 128
FaqI GGGAC 2 cut(s) 62, 173
FblI GTMKAC 1 cut(s) 54
FspBI CTAG 1 cut(s) 181
HapII CCGG 2 cut(s) 36, 142
HinfI GANTC 1 cut(s) 51
HpaII CCGG 2 cut(s) 36, 142
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 14, 33, 50, 66
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 62, 170
HpyAV CCTTC 2 cut(s) 31, 115
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 57, 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 2 cut(s) 57, 75
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 3 cut(s) 49, 125, 155
MaeI CTAG 1 cut(s) 181
MaeII ACGT 2 cut(s) 57, 75
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 166
MflI RGATCY 1 cut(s) 177
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 119, 124, 137, 150
MspI CCGG 2 cut(s) 36, 142
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 1 cut(s) 177
PaeR7I CTCGAG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 1 cut(s) 177
Sau3AI GATC 1 cut(s) 177
SchI GAGTC 1 cut(s) 60
SetI ASST 6 cut(s) 23, 60, 78, 96, 107, 129
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 60, 78
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.