Rroxscaffold_3G00254170

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007078
Physical Location & Seq
Reverse (-)
48292652 .. 48295928
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254170.1

Sequence Viewer

Length: 219 bp
ATGGCTATATATTTCCGGTCGACCTTGTCCAAAGCAATGGGGTTTGTCAGAAGCACCTTCTCGTTTCTGACCGGCACGGTGGTCGGAGTCTACGTCGCTCAGAATTACAACGTCCCCAACATCGATAAGCTCGCCAAGACCTTCCTCCTGATCGGGAAGCACCTCGAGGAGACTTACCGGAAGCCCAAGAAGAGGGACAGCGACGAGAGCGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4535

Protein Analysis

72

Amino Acids

8.22

Weight (kDa)

9.57

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4535 PF15054 18 - 62 1.5e-21 Domain of unknown function (DUF4535)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 164
AccI GTMKAC 2 cut(s) 20, 90
AfiI CCNNNNNNNGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 217
BglII AGATCT 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 15, 177
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 42
BseCI ATCGAT 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 3 cut(s) 16, 72, 178
BslFI GGGAC 2 cut(s) 98, 209
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 2 cut(s) 98, 209
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 2 cut(s) 150, 213
BspCNI CTCAG 1 cut(s) 112
BspDI ATCGAT 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 2 cut(s) 150, 213
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 99
BstKTI GATC 2 cut(s) 153, 216
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 150, 213
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 123
CviJI RGCY 3 cut(s) 5, 130, 184
CviKI_1 RGCY 3 cut(s) 5, 130, 184
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 152, 215
DpnII GATC 2 cut(s) 150, 213
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 164
FaiI YATR 2 cut(s) 8, 10
FaqI GGGAC 2 cut(s) 98, 209
FblI GTMKAC 2 cut(s) 20, 90
FspBI CTAG 1 cut(s) 217
HapII CCGG 3 cut(s) 16, 72, 178
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 87
HpaII CCGG 3 cut(s) 16, 72, 178
Hpy166II GTNNAC 2 cut(s) 21, 91
Hpy188I TCNGA 4 cut(s) 50, 69, 86, 102
Hpy188III TCNNGA 2 cut(s) 148, 154
Hpy8I GTNNAC 2 cut(s) 21, 91
Hpy99I CGWCG 2 cut(s) 98, 206
HpyAV CCTTC 2 cut(s) 67, 151
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 2 cut(s) 93, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 93, 111
Kzo9I GATC 2 cut(s) 150, 213
LpnPI CCDG 4 cut(s) 29, 85, 161, 191
MaeI CTAG 1 cut(s) 217
MaeII ACGT 2 cut(s) 93, 111
MalI GATC 2 cut(s) 152, 215
MboI GATC 2 cut(s) 150, 213
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 213
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 155, 160, 173, 186
MspI CCGG 3 cut(s) 16, 72, 178
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 2 cut(s) 150, 213
PaeR7I CTCGAG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 25
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspXI VCTCGAGB 1 cut(s) 164
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 25
SalI GTCGAC 1 cut(s) 19
Sau3AI GATC 2 cut(s) 150, 213
SchI GAGTC 1 cut(s) 96
SetI ASST 7 cut(s) 26, 59, 96, 114, 132, 143, 165
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 2 cut(s) 96, 114
TaqI TCGA 3 cut(s) 20, 123, 165
TasI AATT 1 cut(s) 103
Tth111I GACNNNGTC 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 20, 90
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.