Rroxscaffold_4G00297280

Domain of unknown function (DUF4535)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007078
Physical Location & Seq
Reverse (-)
17204485 .. 17207468
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297280.1

Sequence Viewer

Length: 444 bp
ATGGTGAAGAAGATTGAGTTGGGGGAGAGGAGGAGGATGATGATTCCTTTCGGATGCCCATGTCGGAGAGAGACAAGGCGACATAATCAATGTCTCGTCAACGTTGGGCGGAGCTTTGCTTGTTCGACATCATTTTCAATCTGGAAGGCGCCGATCTACCAAAGGCCCCAACTTCCCAATGACGCAATCTCTCAATCTGTGATCTTTTTGGTTTCGGGTTTTGTATGGTGGGTTTTTGTTAATTTTCAGTTTGGGTTGCACAAAGCTGAGATTGAAGACGGTTGCCAAGTTGTGGGTTTTGATTACTTTAAAGAAATTTTGGTCGGAATCTACGTCTCTCGGAATTATAACGTCCCCAACGTCGATGAGTTTGCCAAGACCTTCCTCCTAATCGACAACCTCGAAGAGACTTACCGGAAGCCCAAGAAAAAGGAGAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4535

Protein Analysis

147

Amino Acids

17.23

Weight (kDa)

9.32

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4535 PF15054 107 - 141 4.6e-10 Domain of unknown function (DUF4535)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 292
AciI CCGC 1 cut(s) 109
AclI AACGTT 1 cut(s) 102
AcsI RAATTY 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 2 cut(s) 138, 275
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 114, 266
AluI AGCT 2 cut(s) 114, 266
Alw26I GTCTC 4 cut(s) 65, 98, 340, 401
AoxI GGCC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 315
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 282
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BcoDI GTCTC 4 cut(s) 65, 98, 340, 401
BfoI RGCGCY 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 150, 167
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 42, 59
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 2 cut(s) 43, 46
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 4 cut(s) 65, 98, 340, 401
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 153, 201
BspACI CCGC 1 cut(s) 109
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 150, 167
BspT107I GGYRCC 1 cut(s) 148
BssMI GATC 2 cut(s) 153, 201
BssNI GRCGYC 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 42, 59
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 156, 204
BstMAI GTCTC 4 cut(s) 65, 98, 340, 401
BstMBI GATC 2 cut(s) 153, 201
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 42, 59
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 165
CseI GACGC 1 cut(s) 191
CviAII CATG 1 cut(s) 60
CviJI RGCY 5 cut(s) 114, 166, 266, 421, 441
CviKI_1 RGCY 5 cut(s) 114, 166, 266, 421, 441
DdeI CTNAG 1 cut(s) 267
DinI GGCGCC 1 cut(s) 150
DpnI GATC 2 cut(s) 155, 203
DpnII GATC 2 cut(s) 153, 201
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 165
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 1 cut(s) 63
FaiI YATR 4 cut(s) 61, 84, 226, 348
FaqI GGGAC 1 cut(s) 338
FatI CATG 1 cut(s) 59
FokI GGATG 2 cut(s) 49, 66
GlaI GCGC 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 415
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 43, 327
HpaII CCGG 1 cut(s) 415
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 53, 66, 326, 342
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 2 cut(s) 139, 391
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 4 cut(s) 102, 333, 351, 360
HpyCH4V TGCA 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 4 cut(s) 102, 333, 351, 360
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 149
KasI GGCGCC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 153, 201
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 127, 428
LweI GCATC 1 cut(s) 44
MaeII ACGT 4 cut(s) 102, 333, 351, 360
MalI GATC 2 cut(s) 155, 203
MboI GATC 2 cut(s) 153, 201
MboII GAAGA 4 cut(s) 19, 22, 287, 416
MluCI AATT 3 cut(s) 241, 315, 343
Mly113I GGCGCC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 44, 304
MnlI CCTC 6 cut(s) 21, 24, 27, 395, 410, 431
MseI TTAA 2 cut(s) 240, 309
MspI CCGG 1 cut(s) 415
NarI GGCGCC 1 cut(s) 149
NdeII GATC 2 cut(s) 153, 201
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 150, 167
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 357, 399
PfeI GAWTC 2 cut(s) 43, 327
PflMI CCANNNNNTGG 1 cut(s) 292
PluTI GGCGCC 1 cut(s) 152
PsiI TTATAA 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 150, 167
PspPI GGNCC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 240, 309
Sau3AI GATC 2 cut(s) 153, 201
Sau96I GGNCC 1 cut(s) 165
SetI ASST 8 cut(s) 105, 116, 268, 336, 354, 363, 383, 402
SfaNI GCATC 1 cut(s) 44
SfoI GGCGCC 1 cut(s) 150
Sse9I AATT 3 cut(s) 241, 315, 343
SsiI CCGC 1 cut(s) 109
SspDI GGCGCC 1 cut(s) 148
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 4 cut(s) 105, 336, 354, 363
TaqI TCGA 4 cut(s) 125, 363, 393, 402
TasI AATT 3 cut(s) 241, 315, 343
TfiI GAWTC 2 cut(s) 43, 327
Tru1I TTAA 2 cut(s) 240, 309
Tru9I TTAA 2 cut(s) 240, 309
Van91I CCANNNNNTGG 1 cut(s) 292
XapI RAATTY 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.