Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007263.1

Orthogroup ID

OG0007078

Physical Location & Seq

Genomic Coordinates Forward (+)

573 .. 3147

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggaagagagaaaccataggagacttcgtcggagccctgttaccggccgccggattcctgtcgccggcctccgaattcccgtcactggcagccggattcaagtcaccgaccaattttcacctgaattcgcaatggggtttttcagaagcaccttctcgtttctgaccggcacggtggtcggagtctacgtcgctcagaattacaacgtccccaacatcgataagctcgccaagaccttcctcctgatcggcaagcacctcgaggagacttaccggaagcccaagaagagggacagcgacgggagcgaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4535

Protein Analysis

104

Amino Acids

11.88

Weight (kDa)

10.46

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35736 AT2G35736
malus_domestica	MD06G1061000.v1.1
prunus_persica	Prupe.5G071800_v2.0.a1 Prupe.5G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468271 RchiOBHm_Chr7g0202941
rosa_multiflora	Rmu_sc0000368.1_g000041 Rmu_sc0007263.1_g000001 Rmu_sc0008159.1_g000013
rosa_roxburghii	Rroxscaffold_3G00254170 Rroxscaffold_4G00297280 Rroxscaffold_7G00210410
rosa_samantha	Rh3AG016200 Rh3CG015500 Rh3DG016700 Rh3DG207700 Rh3DG300300 Rh5CG480700 Rh6AG212000 Rh7AG202000 Rh7BG202100 Rh7DG208900
rosa_wichuraiana	Rw2G024660 Rw7G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	75, 125
AfiI	CCNNNNNNNGG	5 cut(s)	44, 51, 65, 86, 288
AgsI	TTSAA	1 cut(s)	101
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	16, 260
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	46, 67
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	75, 125
AsuHPI	GGTGA	2 cut(s)	97, 111
AvaI	CYCGRG	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	102
BcgI	CGANNNNNNTGC	4 cut(s)	160, 194, 241, 275
BcoDI	GTCTC	2 cut(s)	16, 260
BfaI	CTAG	1 cut(s)	313
BisI	GCNGC	2 cut(s)	49, 91
BlsI	GCNGC	2 cut(s)	50, 92
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 174, 204
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 51, 65, 86, 288
Bse118I	RCCGGY	3 cut(s)	44, 65, 167
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	219
BseLI	CCNNNNNNNGG	5 cut(s)	44, 51, 65, 86, 288
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	278
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	48, 69
BshVI	ATCGAT	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	6 cut(s)	45, 52, 66, 94, 168, 274
BslFI	GGGAC	2 cut(s)	194, 305
BslI	CCNNNNNNNGG	5 cut(s)	44, 51, 65, 86, 288
BsmAI	GTCTC	2 cut(s)	16, 260
BsmFI	GGGAC	2 cut(s)	194, 305
BsnI	GGCC	2 cut(s)	48, 69
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	48, 69
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	3 cut(s)	44, 65, 167
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	3 cut(s)	44, 65, 167
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	67, 228, 254
BstDEI	CTNAG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	16, 260
BstMBI	GATC	1 cut(s)	246
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	48, 69
BsuTUI	ATCGAT	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	67, 228, 254
Cfr10I	RCCGGY	3 cut(s)	44, 65, 167
ClaI	ATCGAT	1 cut(s)	219
CviJI	RGCY	6 cut(s)	36, 48, 69, 93, 226, 280
CviKI_1	RGCY	6 cut(s)	36, 48, 69, 93, 226, 280
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EclXI	CGGCCG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	38
Eco52I	CGGCCG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	260
EcoRI	GAATTC	2 cut(s)	75, 125
EcoT38I	GRGCYC	1 cut(s)	38
FaiI	YATR	1 cut(s)	18
FaqI	GGGAC	2 cut(s)	194, 305
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	49, 91
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	49, 91
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	2 cut(s)	49, 91
HaeIII	GGCC	2 cut(s)	48, 69
HapII	CCGG	6 cut(s)	45, 52, 66, 94, 168, 274
HinfI	GANTC	3 cut(s)	55, 97, 183
HpaII	CCGG	6 cut(s)	45, 52, 66, 94, 168, 274
HphI	GGTGA	2 cut(s)	97, 111
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	6 cut(s)	33, 74, 146, 165, 182, 198
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	3 cut(s)	33, 194, 302
HpyAV	CCTTC	2 cut(s)	163, 247
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	189, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	2 cut(s)	189, 207
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	33, 303
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	2 cut(s)	189, 207
MaeIII	GTNAC	3 cut(s)	40, 82, 103
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	17, 298
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	75, 113, 125, 199
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	11, 160
MnlI	CCTC	6 cut(s)	80, 251, 256, 269, 282, 301
MroNI	GCCGGC	1 cut(s)	65
MspI	CCGG	6 cut(s)	45, 52, 66, 94, 168, 274
MwoI	GCNNNNNNNGC	1 cut(s)	303
NaeI	GCCGGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	82, 103
PaeR7I	CTCGAG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	55, 97
PflFI	GACNNNGTC	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	50, 92
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	35
PspXI	VCTCGAGB	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	49, 91
Sau3AI	GATC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	124, 155, 192, 210, 228, 239, 261, 312
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	75, 113, 125, 199
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	192, 210
TaqI	TCGA	2 cut(s)	219, 261
TasI	AATT	4 cut(s)	75, 113, 125, 199
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	55, 97
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	82, 103
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	2 cut(s)	82, 103
TspRI	CASTG	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	27
XapI	RAATTY	2 cut(s)	75, 125
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.