Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008159.1

Orthogroup ID

OG0007078

Physical Location & Seq

Genomic Coordinates Reverse (-)

48694 .. 49580

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008159.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgccccttttggctttgtcacacaagtttcgagtacgacaagaaaaagacattacttctaagcctagcaattgccccttcgagtggattgcaatggggtttttcagaagcaccttctcgtttctgaccggcacggtggtcggagtctacgtcgctcagaattacaacgtccccaacatcgataagctcgccaagaccttcctcctgatcggcaagcacctcgaggagacttaccggaagcccaagaagagggacagcgacgggagcgaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4535

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

9.56

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35736 AT2G35736
malus_domestica	MD06G1061000.v1.1
prunus_persica	Prupe.5G071800_v2.0.a1 Prupe.5G072000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0468271 RchiOBHm_Chr7g0202941
rosa_multiflora	Rmu_sc0000368.1_g000041 Rmu_sc0007263.1_g000001 Rmu_sc0008159.1_g000013
rosa_roxburghii	Rroxscaffold_3G00254170 Rroxscaffold_4G00297280 Rroxscaffold_7G00210410
rosa_samantha	Rh3AG016200 Rh3CG015500 Rh3DG016700 Rh3DG207700 Rh3DG300300 Rh5CG480700 Rh6AG212000 Rh7AG202000 Rh7BG202100 Rh7DG208900
rosa_wichuraiana	Rw2G024660 Rw7G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	84, 249
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	221
BcgI	CGANNNNNNTGC	6 cut(s)	71, 105, 121, 155, 202, 236
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	66, 274
BmeT110I	CYCGRG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 249
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	99
BseCI	ATCGAT	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	84, 249
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	129, 235
BslFI	GGGAC	2 cut(s)	155, 266
BslI	CCNNNNNNNGG	2 cut(s)	84, 249
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	155, 266
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	189, 215
BstDEI	CTNAG	2 cut(s)	60, 156
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	189, 215
Cfr10I	RCCGGY	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	35
CviJI	RGCY	4 cut(s)	14, 64, 187, 241
CviKI_1	RGCY	4 cut(s)	14, 64, 187, 241
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	2 cut(s)	60, 156
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	221
FaqI	GGGAC	2 cut(s)	155, 266
FblI	GTMKAC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	66, 274
HapII	CCGG	2 cut(s)	129, 235
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	2 cut(s)	129, 235
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	107, 126, 143, 159
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	155, 263
HpyAV	CCTTC	3 cut(s)	88, 124, 208
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	2 cut(s)	150, 168
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	60, 156
HpySE526I	ACGT	2 cut(s)	150, 168
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	3 cut(s)	142, 218, 248
MaeI	CTAG	2 cut(s)	66, 274
MaeII	ACGT	2 cut(s)	150, 168
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	70
MluCI	AATT	2 cut(s)	70, 160
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	212, 217, 230, 243, 262
MspI	CCGG	2 cut(s)	129, 235
MunI	CAATTG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspXI	VCTCGAGB	1 cut(s)	221
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	153
SetI	ASST	7 cut(s)	116, 153, 171, 189, 200, 222, 273
Sfr274I	CTCGAG	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	70, 160
SspMI	CTAG	2 cut(s)	66, 274
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	2 cut(s)	153, 171
TaqI	TCGA	4 cut(s)	31, 81, 180, 222
TasI	AATT	2 cut(s)	70, 160
TseFI	GTSAC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	66, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.