Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

32182113 .. 32193149

Gene Structure 11037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1183500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGGAGCTCCAGAACACAGTGAAAGAAGCCCTCAATGCACTCTACCACCACCCCGACGACGGCGTCCGCCTGCAGGCCGATCGCTGGCTGCAGGACTTCCAGCGGACGCTCGACGCCTGGCAGGTTGCTGATAACTTGCTTCATGATGCAACTAGCAATCTAGAAACATTGATATTTTGTTCTCAGACCCTTAGAAGCAAGGTACAACGAGATTTTGAAGAACTACCTTCTGAAGCTTTTCGCCCGTTACGTGACTCATTAAATAACTTATTGAGAAAATTCCACAAGGGCCCCCCTAAAGTCAGAACTCAGATTAGCATTGCTGTGGCTGCTTTGGCTGTACATGTTCGCGCTGAAGATTGGGGGGATGGTGGGATTGTGAAGTGGCTTCGTGATGAGATGAATTTGCATCCAGAGTACATACCAGGATTTTTGGAGTTACTAACAGTTTTGCCTGAGGAAGTATTCAACTACAAAATTGCAGCTCGCCCGGAAAGACGCCGCCAATTTGAAAAGGAGCTTACTTCACAAATTGAGGTTGCTCTTGACATCCTGACTGCCTGTTTGAATATTAATGAGCTTAAGGAGCAGGTTCTTGAAGCGTTTGCTTCTTGGCTTCGACTGAAACATGGGATCCCTGGATCTGTGCTTGCATCCCATCCATTGGTGCTCACAGCTCTCTCAAGCTTGAATTCTGAGCTACTTTCAGAGGCCGCAGTAAATGTTATATCTGAGTTGATCCACTATACAGCAGCTGGAAGCTCAGGTGGTGTCTCTGTGCAGATGCCCTTAATTCAAGTTCTTGTCCCTCAAGTAATGAATCTTAAGGGACAGCTAAGAGATTCTTCAAAGGATGAGGAAGATGTGAAGGCCATTGCTCGCTTATTTTCTGACATGGGTGATTCATATGTTGAACTTATTGCAACTGGCTCAGATGAATCAATGTTGATCGTACATGCGTTATTGGAAGTTGCATCACACCCAGAGTACTATATTGCTTCCATGACATTCAACTTTTGGCACAGTCTTCAGGTGAACTTGACCAGAAGGGAATCGTATATTTCGTTTGTGAATGAATCATCTTCCATTGAAGCTGAGAGAAATAGAAGGCTGCAAGTTTTTCGTCCAGCTTATGAGTCACTTGTATCCTTAGTTAGCTTTCGGATTCAATATCCTCAAGATTATCAAGACCTTTCACATGAGGATCTTAAGGAGTTTAAGCAGACTAGATATGCTGTTGCGGATGTCTTAATTGATGCAGCATCAGTTTTAGGGGGGGATGCCACACTTAGAATTCTTTACATGAAGCTTGATGAGGCTGCAGCGTGCTGTCACAATGAACAAAGTGAATGGCGCCCAGCGGAAGCTGCTTTGTTCGGCATCCGGGCAATATCAAGTTATGTTTCAGCAGTTGAAGCTGAAGTAATGCCCAAGGTTATGGATAGGTTGCTTAAATTGCCTCAACATCCTCAACTACTTCAGACAGTTTGCTTAACTATTGGAGCGTATTCAAAGTGGCTTGATTCTGCATCAGGCGGACTGTCCATACTGCCTTCAGTTCTAGATATCCTCATGAGTGGCATGGGTATATCTGAAGATTCCGCAGCAGCTGCGGCTGTGGCATTTAGACAGATTTGTGACGATTGCCGATTAAAGCTCTGTGGATGTTTGGATGGACTCTTCCATATATACCATAGGGCAGTGAGTGGTGAAGGCAGTTTCAAGGTCTCTGCTGATGATTCATTACATCTAGTTGAAGCCTTAAGCAAGGTCATTACTGAACTTCCTCCAGACCATGCTAAGAGGGCTTTGGAGGCCTTGTGCTTGCCCGTTGTTACTCCTCTACAGGAAATTGTCAGCCAAGGCCCAGACACGCTAAATAGCAAGACTGCTCGTGATTTAACAGTTCACATCGATCGATTTGGATACATCTTTAGGTATGTGAATCATGCAGAAGCTGTGGCAGATGCAATTCAAAGACTTTGGCCAATTTTTAAAGCCATATTTGATCTTCGTGCTTGGGACATGCGGACAATGGAGTCTCTGTGCCGAGCTTGCAAATACGCTGTGCGGACTTCTGGAAGGTGCATGGGAATTACAATTGGAGCAATGCTAGAAGAGATTCAAGGTTTATATCAACAGCATCACCAACCGTGCTTCCTCTATTTATCTAGTGAAGTTATAAAGGCAAGCTATCCTAAAACCCAAAAACCTGAATTTTTTTTCCTCTTCTTTTTAGTTGTTTTCTGTAAATTTAAAATGGTGCATTTGTTGCTTCTTATGCTGCAGATATTCGGTTCTGACCCATCTTGTGCAAATTATTTGAAAAGTTTGATTGAAGCACTTTTTATGCACACAACACATCTTCTCACGAGCATTCAGGAATTTACTGCCAGACCTGATATAGCAGATGATTGTTTTCTGTTGGCATCAAGATGCATTCGCTATTGTCCTCAATTATTTATTCCATCAGCTGTTTTTCCATCATTAGTAGATTGCTCGCTGATTGGGATTACAGTGCAGCACAGAGAGGCATCAAATTCAATATTAACGTTCTTATCTGATATATTTGATCTTGGAAACTCTGCCGGGGGAGAACAATACTTACCAATCAGGAATTGTGTCATTATTCCTCGAGGGTCCAGCATCACAAGAATTTTAATTGCTTCACTAACAGGAGCACTTCCAAGTTCCCGACTAGAATTGGTAACCTACACGCTACTATCTTTATCTCGAGCTTATGGGCCACAGTCAGTGGAGTGGGCCAAGGAGAGTATTTCTTTAATTCCTTTGACGGCTGTGACAGAAGTTGAGCGTTCGAGATTCTTGAAGGCATTGTCAGATGCTGCGTCTGGGGCTAACGTTAATGCCCTGTCTGTTCCAATTGAGGACCTATCGGATGTTTGCCGCCGTAATCGAACAGTTATGGAGATTGTTCAACAATCTTTGAGGCCACTTGAGTTGAACATAGCACCGGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

995

Amino Acids

111.0

Weight (kDa)

5.59

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	98 - 243	1.9e-19	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	285 - 352	5.9e-15	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_3rd	PF24140	474 - 563	6e-08	Transportin-3/Importin-13 third TPR domain
TPR_TNPO3_IPO13_4th	PF24139	656 - 729	5.3e-12	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2183
AasI	GACNNNNNNGTC	2 cut(s)	62, 2038
AbsI	CCTCGAGG	1 cut(s)	2634
Acc36I	ACCTGC	2 cut(s)	112, 580
AccB1I	GGYRCC	1 cut(s)	1353
AccB7I	CCANNNNNTGG	1 cut(s)	664
AccII	CGCG	1 cut(s)	351
AclI	AACGTT	2 cut(s)	2552, 2862
AclWI	GGATC	5 cut(s)	628, 641, 649, 733, 1212
AcoI	YGGCCR	1 cut(s)	1985
AcsI	RAATTY	9 cut(s)	278, 403, 691, 1293, 2216, 2252, 2384, 2539, 2655
AcuI	CTGAAG	7 cut(s)	252, 375, 1013, 1440, 1463, 1539, 1614
AcyI	GRCGYC	4 cut(s)	63, 114, 499, 1354
AfaI	GTAC	5 cut(s)	204, 342, 419, 954, 989
AfiI	CCNNNNNNNGG	4 cut(s)	59, 73, 84, 664
AflII	CTTAAG	4 cut(s)	581, 824, 1208, 1762
AflIII	ACRYGT	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	116, 424, 637
Alw21I	GWGCWC	3 cut(s)	9, 672, 2683
Alw26I	GTCTC	3 cut(s)	778, 1732, 2046
AlwI	GGATC	5 cut(s)	628, 641, 649, 733, 1212
AlwNI	CAGNNNCTG	4 cut(s)	755, 1610, 1958, 2846
Ama87I	CYCGRG	2 cut(s)	2634, 2733
ApaI	GGGCCC	1 cut(s)	293
ApoI	RAATTY	9 cut(s)	278, 403, 691, 1293, 2216, 2252, 2384, 2539, 2655
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AseI	ATTAAT	1 cut(s)	573
Asp700I	GAANNNNTTC	2 cut(s)	237, 2121
AspLEI	GCGC	2 cut(s)	353, 1356
AspS9I	GGNCC	7 cut(s)	289, 290, 1865, 2640, 2744, 2763, 2890
AsuC2I	CCSGG	4 cut(s)	491, 1385, 2590, 2976
AsuHPI	GGTGA	4 cut(s)	911, 1045, 1721, 2138
AvaI	CYCGRG	2 cut(s)	2634, 2733
AvaII	GGWCC	2 cut(s)	2640, 2890
AxyI	CCTNAGG	1 cut(s)	456
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	1987
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	1353
BanII	GRGCYC	2 cut(s)	9, 293
BauI	CACGAG	2 cut(s)	1893, 2371
BbsI	GAAGAC	1 cut(s)	1019
Bbv12I	GWGCWC	3 cut(s)	9, 672, 2683
BccI	CCATC	6 cut(s)	362, 666, 1667, 2314, 2476, 2491
BceAI	ACGGC	3 cut(s)	76, 2811, 2895
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 1103, 1137
BciT130I	CCWGG	3 cut(s)	118, 426, 639
BciVI	GTATCC	2 cut(s)	1156, 1919
BcnI	CCSGG	4 cut(s)	491, 1385, 2590, 2976
BcoDI	GTCTC	3 cut(s)	778, 1732, 2046
BfaI	CTAG	8 cut(s)	153, 161, 1227, 1562, 1751, 2114, 2172, 2699
BfmI	CTRYAG	5 cut(s)	71, 89, 1320, 1844, 2285
BfoI	RGCGCY	1 cut(s)	1357
BfrI	CTTAAG	4 cut(s)	581, 824, 1208, 1762
BfuAI	ACCTGC	2 cut(s)	112, 580
BfuI	GTATCC	2 cut(s)	1156, 1919
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	7 cut(s)	118, 426, 491, 639, 1385, 2590, 2976
Bme18I	GGWCC	2 cut(s)	2640, 2890
BmeT110I	CYCGRG	2 cut(s)	2634, 2733
BmgT120I	GGNCC	7 cut(s)	289, 290, 1865, 2640, 2744, 2763, 2890
BmiI	GGNNCC	5 cut(s)	291, 292, 635, 1355, 2641
BmrFI	CCNGG	7 cut(s)	118, 426, 491, 639, 1385, 2590, 2976
BpiI	GAAGAC	1 cut(s)	1019
BpmI	CTGGAG	1 cut(s)	1773
Bpu10I	CCTNAGC	1 cut(s)	763
BpuEI	CTTGAG	4 cut(s)	667, 795, 1161, 2978
BpuMI	CCSGG	4 cut(s)	491, 1385, 2590, 2976
Bsa29I	ATCGAT	2 cut(s)	1914, 1918
BsaAI	YACGTR	1 cut(s)	251
BsaHI	GRCGYC	4 cut(s)	63, 114, 499, 1354
BsaI	GGTCTC	1 cut(s)	1732
BsaJI	CCNNGG	5 cut(s)	637, 1431, 1861, 2589, 2766
BsaXI	ACNNNNNCTCC	4 cut(s)	1805, 1835, 2030, 2060
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 73, 84, 664
Bse1I	ACTGG	1 cut(s)	931
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	3 cut(s)	318, 873, 2115
BseBI	CCWGG	3 cut(s)	118, 426, 639
BseCI	ATCGAT	2 cut(s)	1914, 1918
BseDI	CCNNGG	5 cut(s)	637, 1431, 1861, 2589, 2766
BseLI	CCNNNNNNNGG	4 cut(s)	59, 73, 84, 664
BseMI	GCAATG	3 cut(s)	318, 873, 2115
BseMII	CTCAG	8 cut(s)	197, 323, 447, 687, 723, 777, 945, 1086
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	1 cut(s)	1830
BseSI	GKGCMC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	1357
BsgI	GTGCAG	2 cut(s)	800, 2540
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	2 cut(s)	82, 1918
BshNI	GGYRCC	1 cut(s)	1353
BshVI	ATCGAT	2 cut(s)	1914, 1918
BsiEI	CGRYCG	2 cut(s)	82, 1918
BsiHKAI	GWGCWC	3 cut(s)	9, 672, 2683
BsiHKCI	CYCGRG	2 cut(s)	2634, 2733
BsiSI	CCGG	4 cut(s)	491, 1384, 2589, 2975
BslFI	GGGAC	3 cut(s)	791, 843, 2036
BslI	CCNNNNNNNGG	4 cut(s)	59, 73, 84, 664
BsmAI	GTCTC	3 cut(s)	778, 1732, 2046
BsmFI	GGGAC	3 cut(s)	791, 843, 2036
BsmI	GAATGC	2 cut(s)	2376, 2439
Bso31I	GGTCTC	1 cut(s)	1732
BsoBI	CYCGRG	2 cut(s)	2634, 2733
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	4 cut(s)	9, 293, 672, 2683
Bsp1407I	TGTACA	1 cut(s)	340
BspCNI	CTCAG	8 cut(s)	196, 322, 448, 688, 724, 776, 944, 1087
BspDI	ATCGAT	2 cut(s)	1914, 1918
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	2 cut(s)	142, 1572
BspLI	GGNNCC	5 cut(s)	291, 292, 635, 1355, 2641
BspMAI	CTGCAG	4 cut(s)	75, 93, 1324, 2289
BspMI	ACCTGC	2 cut(s)	112, 580
BspPI	GGATC	5 cut(s)	628, 641, 649, 733, 1212
BspT107I	GGYRCC	1 cut(s)	1353
BspTI	CTTAAG	4 cut(s)	581, 824, 1208, 1762
BspTNI	GGTCTC	1 cut(s)	1732
BsrDI	GCAATG	3 cut(s)	318, 873, 2115
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	931
BssECI	CCNNGG	5 cut(s)	637, 1431, 1861, 2589, 2766
BssNI	GRCGYC	4 cut(s)	63, 114, 499, 1354
BssSI	CACGAG	2 cut(s)	1893, 2371
BssT1I	CCWWGG	3 cut(s)	1431, 1861, 2766
Bst2BI	CACGAG	2 cut(s)	1893, 2371
Bst2UI	CCWGG	3 cut(s)	118, 426, 639
Bst6I	CTCTTC	3 cut(s)	1685, 2112, 2234
BstACI	GRCGYC	4 cut(s)	63, 114, 499, 1354
BstAFI	CTTAAG	4 cut(s)	581, 824, 1208, 1762
BstAPI	GCANNNNNTGC	2 cut(s)	1610, 2272
BstAUI	TGTACA	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	251
BstEII	GGTNACC	1 cut(s)	2707
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	1357
BstHHI	GCGC	2 cut(s)	353, 1356
BstMAI	GTCTC	3 cut(s)	778, 1732, 2046
BstMCI	CGRYCG	2 cut(s)	82, 1918
BstNI	CCWGG	3 cut(s)	118, 426, 639
BstNSI	RCATGY	3 cut(s)	347, 959, 2029
BstPI	GGTNACC	1 cut(s)	2707
BstSCI	CCNGG	7 cut(s)	116, 424, 489, 637, 1383, 2588, 2974
BstSFI	CTRYAG	5 cut(s)	71, 89, 1320, 1844, 2285
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	1019
BstX2I	RGATCY	3 cut(s)	633, 641, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	1438
BstYI	RGATCY	3 cut(s)	633, 641, 1204
Bsu15I	ATCGAT	2 cut(s)	1914, 1918
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	2 cut(s)	1156, 1919
BsuTUI	ATCGAT	2 cut(s)	1914, 1918
BtsI	GCAGTG	1 cut(s)	1707
BtsIMutI	CAGTG	4 cut(s)	24, 1707, 2523, 2760
BveI	ACCTGC	2 cut(s)	112, 580
CaiI	CAGNNNCTG	4 cut(s)	755, 1610, 1958, 2846
CciI	TCATGA	2 cut(s)	142, 1572
CfoI	GCGC	2 cut(s)	353, 1356
Cfr13I	GGNCC	7 cut(s)	289, 290, 1865, 2640, 2744, 2763, 2890
ClaI	ATCGAT	2 cut(s)	1914, 1918
CseI	GACGC	5 cut(s)	52, 115, 122, 507, 2838
Csp6I	GTAC	5 cut(s)	203, 341, 418, 953, 988
CspCI	CAANNNNNGTGG	2 cut(s)	2943, 2978
CviQI	GTAC	5 cut(s)	203, 341, 418, 953, 988
DinI	GGCGCC	1 cut(s)	1355
DraI	TTTAAA	2 cut(s)	1996, 2257
DrdI	GACNNNNNNGTC	2 cut(s)	62, 2038
DseDI	GACNNNNNNGTC	2 cut(s)	62, 2038
EaeI	YGGCCR	1 cut(s)	1985
Eam1104I	CTCTTC	3 cut(s)	1685, 2112, 2234
EarI	CTCTTC	3 cut(s)	1685, 2112, 2234
EciI	GGCGGA	2 cut(s)	56, 1551
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	1431, 1861, 2766
Eco147I	AGGCCT	1 cut(s)	1817
Eco24I	GRGCYC	2 cut(s)	9, 293
Eco31I	GGTCTC	1 cut(s)	1732
Eco32I	GATATC	1 cut(s)	1567
Eco47I	GGWCC	2 cut(s)	2640, 2890
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	7 cut(s)	252, 375, 1013, 1440, 1463, 1539, 1614
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	2 cut(s)	2634, 2733
Eco91I	GGTNACC	1 cut(s)	2707
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	3 cut(s)	289, 290, 2890
EcoO65I	GGTNACC	1 cut(s)	2707
EcoRI	GAATTC	2 cut(s)	691, 1293
EcoRII	CCWGG	3 cut(s)	116, 424, 637
EcoRV	GATATC	1 cut(s)	1567
EcoT14I	CCWWGG	3 cut(s)	1431, 1861, 2766
EcoT22I	ATGCAT	1 cut(s)	2441
EcoT38I	GRGCYC	2 cut(s)	9, 293
EgeI	GGCGCC	1 cut(s)	1355
EheI	GGCGCC	1 cut(s)	1355
ErhI	CCWWGG	3 cut(s)	1431, 1861, 2766
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	3 cut(s)	791, 843, 2036
FauNDI	CATATG	1 cut(s)	907
FriOI	GRGCYC	2 cut(s)	9, 293
FspBI	CTAG	8 cut(s)	153, 161, 1227, 1562, 1751, 2114, 2172, 2699
GlaI	GCGC	2 cut(s)	352, 1355
GsaI	CCCAGC	1 cut(s)	1361
GsuI	CTGGAG	1 cut(s)	1773
HaeII	RGCGCY	1 cut(s)	1357
HapII	CCGG	4 cut(s)	491, 1384, 2589, 2975
HgaI	GACGC	5 cut(s)	52, 115, 122, 507, 2838
HhaI	GCGC	2 cut(s)	353, 1356
Hin1I	GRCGYC	4 cut(s)	63, 114, 499, 1354
Hin6I	GCGC	2 cut(s)	351, 1354
HinP1I	GCGC	2 cut(s)	351, 1354
HindIII	AAGCTT	3 cut(s)	234, 685, 1307
HpaII	CCGG	4 cut(s)	491, 1384, 2589, 2975
HphI	GGTGA	4 cut(s)	911, 1045, 1721, 2138
Hpy166II	GTNNAC	2 cut(s)	1036, 1909
Hpy8I	GTNNAC	2 cut(s)	1036, 1909
Hpy99I	CGWCG	3 cut(s)	59, 62, 116
HpyAV	CCTTC	8 cut(s)	237, 862, 1041, 1101, 1563, 1706, 2076, 2824
HpyCH4IV	ACGT	3 cut(s)	250, 2552, 2862
HpySE526I	ACGT	3 cut(s)	250, 2552, 2862
Hsp92I	GRCGYC	4 cut(s)	63, 114, 499, 1354
HspAI	GCGC	2 cut(s)	351, 1354
KasI	GGCGCC	1 cut(s)	1353
LmnI	GCTCC	7 cut(s)	4, 12, 517, 586, 1502, 2105, 2678
MaeI	CTAG	8 cut(s)	153, 161, 1227, 1562, 1751, 2114, 2172, 2699
MaeII	ACGT	3 cut(s)	250, 2552, 2862
MaeIII	GTNAC	9 cut(s)	246, 251, 438, 1137, 1331, 1637, 1834, 2707, 2800
MfeI	CAATTG	2 cut(s)	2100, 2883
MflI	RGATCY	3 cut(s)	633, 641, 1204
MhlI	GDGCHC	4 cut(s)	9, 293, 672, 2683
MlsI	TGGCCA	1 cut(s)	1987
MluNI	TGGCCA	1 cut(s)	1987
Mly113I	GGCGCC	1 cut(s)	1354
MlyI	GAGTC	4 cut(s)	248, 1145, 1671, 2048
Mox20I	TGGCCA	1 cut(s)	1987
Mph1103I	ATGCAT	1 cut(s)	2441
MroXI	GAANNNNTTC	2 cut(s)	237, 2121
MscI	TGGCCA	1 cut(s)	1987
MslI	CAYNNNNRTG	2 cut(s)	323, 2434
Msp20I	TGGCCA	1 cut(s)	1987
MspA1I	CMGCKG	5 cut(s)	103, 755, 1361, 1610, 2474
MspCI	CTTAAG	4 cut(s)	581, 824, 1208, 1762
MspI	CCGG	4 cut(s)	491, 1384, 2589, 2975
MspR9I	CCNGG	7 cut(s)	118, 426, 491, 639, 1385, 2590, 2976
MunI	CAATTG	2 cut(s)	2100, 2883
Mva1269I	GAATGC	2 cut(s)	2376, 2439
MvaI	CCWGG	3 cut(s)	118, 426, 639
MvnI	CGCG	1 cut(s)	351
NarI	GGCGCC	1 cut(s)	1354
NciI	CCSGG	4 cut(s)	491, 1385, 2590, 2976
NdeI	CATATG	1 cut(s)	907
NlaIV	GGNNCC	5 cut(s)	291, 292, 635, 1355, 2641
NmeAIII	GCCGAG	1 cut(s)	2075
NmuCI	GTSAC	5 cut(s)	251, 1137, 1331, 1637, 2800
NsiI	ATGCAT	1 cut(s)	2441
NspI	RCATGY	3 cut(s)	347, 959, 2029
PaeR7I	CTCGAG	2 cut(s)	2634, 2733
PagI	TCATGA	2 cut(s)	142, 1572
PceI	AGGCCT	1 cut(s)	1817
PciI	ACATGT	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	2 cut(s)	247, 1061
PctI	GAATGC	2 cut(s)	2376, 2439
PdmI	GAANNNNTTC	2 cut(s)	237, 2121
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	664
Ple19I	CGATCG	2 cut(s)	82, 1918
PleI	GAGTC	4 cut(s)	248, 1144, 1671, 2047
PluTI	GGCGCC	1 cut(s)	1357
PpsI	GAGTC	4 cut(s)	248, 1144, 1671, 2047
Ppu21I	YACGTR	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	2890
PscI	ACATGT	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	573
PsiI	TTATAA	1 cut(s)	2183
Psp124BI	GAGCTC	1 cut(s)	9
Psp1406I	AACGTT	2 cut(s)	2552, 2862
Psp5II	RGGWCCY	1 cut(s)	2890
Psp6I	CCWGG	3 cut(s)	116, 424, 637
PspEI	GGTNACC	1 cut(s)	2707
PspFI	CCCAGC	1 cut(s)	1357
PspGI	CCWGG	3 cut(s)	116, 424, 637
PspN4I	GGNNCC	5 cut(s)	291, 292, 635, 1355, 2641
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	7 cut(s)	289, 290, 1865, 2640, 2744, 2763, 2890
PspPPI	RGGWCCY	1 cut(s)	2890
PspXI	VCTCGAGB	1 cut(s)	2634
PsrI	GAACNNNNNNTAC	2 cut(s)	2589, 2621
PstI	CTGCAG	4 cut(s)	75, 93, 1324, 2289
PstNI	CAGNNNCTG	4 cut(s)	755, 1610, 1958, 2846
PsuI	RGATCY	3 cut(s)	633, 641, 1204
PsyI	GACNNNGTC	1 cut(s)	62
PvuI	CGATCG	2 cut(s)	82, 1918
PvuII	CAGCTG	3 cut(s)	755, 1610, 2474
RsaI	GTAC	5 cut(s)	204, 342, 419, 954, 989
RsaNI	GTAC	5 cut(s)	203, 341, 418, 953, 988
RseI	CAYNNNNRTG	2 cut(s)	323, 2434
SacI	GAGCTC	1 cut(s)	9
Sau96I	GGNCC	7 cut(s)	289, 290, 1865, 2640, 2744, 2763, 2890
SbfI	CCTGCAGG	1 cut(s)	75
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	4 cut(s)	248, 1145, 1671, 2048
ScrFI	CCNGG	7 cut(s)	118, 426, 491, 639, 1385, 2590, 2976
SdaI	CCTGCAGG	1 cut(s)	75
SduI	GDGCHC	4 cut(s)	9, 293, 672, 2683
SfcI	CTRYAG	5 cut(s)	71, 89, 1320, 1844, 2285
SfoI	GGCGCC	1 cut(s)	1355
Sfr274I	CTCGAG	2 cut(s)	2634, 2733
SinI	GGWCC	2 cut(s)	2640, 2890
SlaI	CTCGAG	2 cut(s)	2634, 2733
SmiMI	CAYNNNNRTG	2 cut(s)	323, 2434
Sse8387I	CCTGCAGG	1 cut(s)	75
SseBI	AGGCCT	1 cut(s)	1817
SspDI	GGCGCC	1 cut(s)	1353
SspI	AATATT	2 cut(s)	571, 2547
SspMI	CTAG	8 cut(s)	153, 161, 1227, 1562, 1751, 2114, 2172, 2699
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	1817
StyD4I	CCNGG	7 cut(s)	116, 424, 489, 637, 1383, 2588, 2974
StyI	CCWWGG	3 cut(s)	1431, 1861, 2766
TaiI	ACGT	3 cut(s)	253, 2555, 2865
TaqI	TCGA	8 cut(s)	111, 619, 1914, 1918, 2635, 2734, 2819, 2917
TatI	WGTACW	3 cut(s)	340, 417, 987
TauI	GCSGC	4 cut(s)	504, 716, 1616, 2910
TscAI	CASTG	4 cut(s)	24, 1707, 2523, 2760
TseFI	GTSAC	5 cut(s)	251, 1137, 1331, 1637, 2800
Tsp45I	GTSAC	5 cut(s)	251, 1137, 1331, 1637, 2800
TspDTI	ATGAA	9 cut(s)	131, 416, 833, 894, 951, 1089, 1319, 1353, 1731
TspRI	CASTG	4 cut(s)	24, 1707, 2523, 2760
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	664
Vha464I	CTTAAG	4 cut(s)	581, 824, 1208, 1762
VpaK11BI	GGWCC	2 cut(s)	2640, 2890
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	9 cut(s)	278, 403, 691, 1293, 2216, 2252, 2384, 2539, 2655
XbaI	TCTAGA	2 cut(s)	160, 1561
XceI	RCATGY	3 cut(s)	347, 959, 2029
XhoI	CTCGAG	2 cut(s)	2634, 2733
XmnI	GAANNNNTTC	2 cut(s)	237, 2121
XspI	CTAG	8 cut(s)	153, 161, 1227, 1562, 1751, 2114, 2172, 2699
ZrmI	AGTACT	1 cut(s)	989
Zsp2I	ATGCAT	1 cut(s)	2441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.