Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

2217394 .. 2228202

Gene Structure 10809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG032000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGCTGGACTACCAGATTAGCAAAACCATGGAGCTCCAGAACACTGTGAAAGAAGCCCTAAACGCACTCTACCACCACCCCGACGACGGCGTTCGGATGCAAGCCGATCGCTTTCTACAGGACTTTCAGCGAACCCTAGACGCCTGGCAGGTTGCTGATAACTTGCTTCATGACGCGACCAGCAATCTAGAAACTTTGATATTTTGCTCCCAGACCCTTAGAAGCAAGGTACAACGAGATTTTGAAGAACTACCTTCTGAAGCTTTTCGCCCATTGCGCGACTCCTTAAATAACTTATTGAGAGAGTTCCATAAGGGTCCCCCTAAAGTCAGAACTCAGATTAGCATTGCTGTTGCTGCCTTAGCTGTACACGTTCCTGCTGAAGATTGGGGAGATGGTGGTATAGTGAACTGGCTTCGGGATCAGATGAATTCGCATCCAGAATATATACCTGGATTTTTAGAGTTACTAACAGTTTTGCCTGAGGAAGTATTCAACTACAAGATAGCAGCTCGCCCAGAAAGACGTCGCCAATTTGAGAAAGAGCTTACTTCTCAAATGGAGGTTGCTCTTAACATCTTGACAGCTTGTTTGAATATCAATGAGCTCAAGGAGCAGGTTCTTGAGGCATTTGCTTCTTGGCTTCGGCTGAAGCATGGGATCCCTGGATCTTTGCTTGCATCTCACCCATTGGTGCTCACCGCTCTCTCCAGCTTGAATTCTGAACTCCTTTCAGAGGCAGCTGTAAATGTTATTTCTGAGTTGATACACTATACGACATCTAGAGAATCTGGTGGTGTGCAAGTTCAAATGCCTTTAATTCAAGTCATTGTTCCCCAAGTGATGAATCTCAAGGCACAACTTAGAGATTCTTCCAAGGATGAAGAAGATGTGAAGGCTATTGCTCGATTATTTGCTGACATGGGGGATTCATACGTCGACCTGATTGCAACTGGTTCTGATGAATCAAAATTGATTGTACAAGCATTATTGGAAGTTGCTGCACACCCGGAATATTATATAGCTTCCATGACATTCAATTTTTGGCATAGTCTTCAGGTGACCTTGACAAGAAGGGATTCTTATATCTCGTTGGTTAATGAATCCACCATTGAATCTGAGAAAAATAGAAGACTGCATATATTCCGCCCTGCCTACGAGTCGCTCGTGTCCTTAGTTAGCTTCCGAATTCAATATCCTCGAGATTATCAAGACCTGTCATATGAGGACCTTAAGGAGTTCAAGCAGACTAGATATGCTGTTGCGGATGTCTTAATTGACGCAGCATCAGTTTTAGGAGGCGATGCCGCACTGAGAATTCTTTACATGAAACTTGATGAGGCCGCAGCCTGCTGTCAGAATGAAGAAAGTGAATGGCGCCCAGCAGAAGCTGCTTTATTTGGCATCCGGGCTATATCAAATTATGTATCAGTAGTTGAAGCTGAAGTAATGCCTAAGGTCATGGGCAGACTTCTAAAACTACCTCAGCATCCCCAACTACTTCAGACAGTGTGCTTAACAATAGGAGCTTATTCAAAATGGCTTGATGCGGCATCTGGTGGACTCTCCATACTGCCTTCAGTTATAGATGTCCTCATGAGTGGCCTTGCTAAATCTGAAGATTCTGCAGCAGCTGCAGCTTTGGCATTTCGGCAGATCTGTGATGATTGCCGGTTAAAGCTCTGTGGATGTTTGGAAGGCCTTTTCCATATATATCACAGGGCAGTGAATGGTGAAGGTACTTTGAAAGTTTGTGCTGAGGATTCATTGCATCTAGTCGAAGCCTTAAGCAAGGTTATTAGTGAACTTCCCCCAGACCAAGCTAAGAGGGCGCTGGAGGCCTTGTGTTTGCCAGTCGTTAGTCCTTTACAGGAAGTTCTTAGCCAAGCGCCAGAGATGCTAAATAACAGGCCTGCTCGTGATTTCACAGTTCATATTGATCGGTTTGGGTACATCTTTAGATATGTAACCCATGCAGAAGCTGTGGCAGATGCAATCCAAAGGCTTTGGCCCATTTTCAAAGCCATCTTTGATCTTCGTGCTTGGGACATGCGGACAATGGAGTCTATTTGCCGAGCTTGCAAATACGCTGTGAGAACTTCTGGAAGGTGCATGGGAACGACAATTGGAGAAATGCTAGAGAAGATTCAAGAATTGTATAAACAGCATCACCAACCATGCTTCCTTTATCTCTCTAGTGAAGTTATAAAGATATTTGGATCAGACCCGTCATGTGCTGATTATTTGAAAAATTTGATTGAATCACTCTTTCAGCACACAACACGTATTCTCACGAGCATTCAAGAATTTACTTCCAGACCAGATATAGCAGATGATTGCTTTCTGCTCGCATCGAGATGCATCCGTTATTGTGCACACTTGTTTATTCCTTCTGCAGCATTTCCAGCATTAGTAGATTGCTCATTGATTGGCATTACAGTTCAACACAGGGAGGCGTCAAATTCAATATTGACCTTCTTATCAGATATCTTTGATCATGCAAACTCTACCGAGGGGGCAAAATACTTACCCATCAGGGATGCTGTAATTATTCCTCGAGGATCCAGCATGACAAGAGTTTTGATTGCTGCATTAACAGGAGCAATTCCAAGCTCTCGCCTAGAAAATGTAGTTTGTAATCCTTACTCATATTTTCAAACCCTTTCCTATGTGCTAACATTAACCATGATAGGACATCTACAAGTTGTGTTTGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

906

Amino Acids

101.68

Weight (kDa)

5.52

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	107 - 252	3.2e-21	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	294 - 361	4.4e-15	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_3rd	PF24140	482 - 571	5.7e-08	Transportin-3/Importin-13 third TPR domain
TPR_TNPO3_IPO13_4th	PF24139	664 - 764	1.1e-18	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2207
AasI	GACNNNNNNGTC	1 cut(s)	2062
AatII	GACGTC	1 cut(s)	529
AbsI	CCTCGAGG	1 cut(s)	2556
Acc36I	ACCTGC	2 cut(s)	139, 607
AccB1I	GGYRCC	1 cut(s)	1377
AccBSI	CCGCTC	1 cut(s)	704
AccI	GTMKAC	1 cut(s)	939
AccII	CGCG	2 cut(s)	176, 279
AciI	CCGC	7 cut(s)	702, 1147, 1265, 1308, 1344, 1550, 2053
AclWI	GGATC	7 cut(s)	429, 655, 668, 676, 2227, 2556, 2569
AcsI	RAATTY	7 cut(s)	430, 718, 1188, 1317, 2251, 2306, 2461
AcuI	CTGAAG	8 cut(s)	279, 402, 671, 1040, 1464, 1487, 1563, 1638
AcyI	GRCGYC	4 cut(s)	141, 526, 1378, 2456
AfaI	GTAC	5 cut(s)	231, 369, 981, 1741, 1952
AfiI	CCNNNNNNNGG	2 cut(s)	86, 736
AflII	CTTAAG	2 cut(s)	1232, 1786
AflIII	ACRYGT	2 cut(s)	370, 2282
AjnI	CCWGG	3 cut(s)	143, 451, 664
Alw21I	GWGCWC	4 cut(s)	36, 609, 699, 2377
Alw44I	GTGCAC	1 cut(s)	2373
AlwI	GGATC	7 cut(s)	429, 655, 668, 676, 2227, 2556, 2569
AlwNI	CAGNNNCTG	3 cut(s)	1391, 1634, 1982
Ama87I	CYCGRG	2 cut(s)	1200, 2556
AoxI	GGCC	6 cut(s)	1341, 1603, 1699, 1839, 1910, 2009
ApaLI	GTGCAC	1 cut(s)	2373
ApoI	RAATTY	7 cut(s)	430, 718, 1188, 1317, 2251, 2306, 2461
ArsI	GACNNNNNNTTYG	4 cut(s)	574, 606, 2563, 2595
Asp700I	GAANNNNTTC	2 cut(s)	264, 1078
AspLEI	GCGC	4 cut(s)	279, 1380, 1834, 1891
AspS9I	GGNCC	3 cut(s)	317, 1228, 2010
AsuC2I	CCSGG	2 cut(s)	1010, 1409
AsuHPI	GGTGA	5 cut(s)	677, 691, 1072, 1745, 2162
AvaI	CYCGRG	2 cut(s)	1200, 2556
AvaII	GGWCC	2 cut(s)	317, 1228
AxyI	CCTNAGG	2 cut(s)	483, 1455
BaeGI	GKGCMC	1 cut(s)	2377
BamHI	GGATCC	2 cut(s)	660, 2561
BanI	GGYRCC	1 cut(s)	1377
BanII	GRGCYC	2 cut(s)	36, 609
BauI	CACGAG	3 cut(s)	1166, 1917, 2293
BbsI	GAAGAC	2 cut(s)	1046, 1138
Bbv12I	GWGCWC	4 cut(s)	36, 609, 699, 2377
BbvCI	CCTCAGC	2 cut(s)	1485, 1758
BccI	CCATC	3 cut(s)	389, 2033, 2540
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	89, 123, 929, 963
BciT130I	CCWGG	3 cut(s)	145, 453, 666
BclI	TGATCA	1 cut(s)	2494
BcnI	CCSGG	2 cut(s)	1010, 1409
BfaI	CTAG	8 cut(s)	137, 188, 783, 1251, 1775, 2138, 2196, 2621
BfmI	CTRYAG	4 cut(s)	116, 1626, 1635, 2394
BfoI	RGCGCY	3 cut(s)	1381, 1835, 1892
BfrI	CTTAAG	2 cut(s)	1232, 1786
BfuAI	ACCTGC	2 cut(s)	139, 607
BglII	AGATCT	1 cut(s)	1656
Bme1390I	CCNGG	5 cut(s)	145, 453, 666, 1010, 1409
Bme18I	GGWCC	2 cut(s)	317, 1228
BmeT110I	CYCGRG	2 cut(s)	1200, 2556
BmgT120I	GGNCC	3 cut(s)	317, 1228, 2010
BmiI	GGNNCC	5 cut(s)	318, 319, 662, 1379, 2563
BmrFI	CCNGG	5 cut(s)	145, 453, 666, 1010, 1409
BpiI	GAAGAC	2 cut(s)	1046, 1138
BpmI	CTGGAG	3 cut(s)	20, 694, 1856
Bpu10I	CCTNAGC	3 cut(s)	361, 1485, 1758
BpuEI	CTTGAG	3 cut(s)	593, 644, 836
BpuMI	CCSGG	2 cut(s)	1010, 1409
BsaAI	YACGTR	1 cut(s)	2285
BsaHI	GRCGYC	4 cut(s)	141, 526, 1378, 2456
BsaJI	CCNNGG	4 cut(s)	27, 664, 876, 2511
BsaXI	ACNNNNNCTCC	2 cut(s)	1829, 1859
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 736
Bse118I	RCCGGY	1 cut(s)	1671
Bse1I	ACTGG	3 cut(s)	416, 958, 1853
Bse21I	CCTNAGG	2 cut(s)	483, 1455
Bse3DI	GCAATG	3 cut(s)	272, 345, 1766
BseBI	CCWGG	3 cut(s)	145, 453, 666
BseDI	CCNNGG	4 cut(s)	27, 664, 876, 2511
BseGI	GGATG	9 cut(s)	102, 436, 886, 1273, 1404, 1489, 1694, 2361, 2545
BseLI	CCNNNNNNNGG	2 cut(s)	86, 736
BseMI	GCAATG	3 cut(s)	272, 345, 1766
BseMII	CTCAG	7 cut(s)	350, 474, 750, 1110, 1304, 1499, 1749
BseNI	ACTGG	3 cut(s)	416, 958, 1853
BseSI	GKGCMC	1 cut(s)	2377
BseYI	CCCAGC	1 cut(s)	1381
BsgI	GTGCAG	1 cut(s)	987
Bsh1236I	CGCG	2 cut(s)	176, 279
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	1343, 1605, 1701, 1841, 1912, 2011
BshNI	GGYRCC	1 cut(s)	1377
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	4 cut(s)	36, 609, 699, 2377
BsiHKCI	CYCGRG	2 cut(s)	1200, 2556
BsiSI	CCGG	3 cut(s)	1010, 1408, 1672
BslFI	GGGAC	2 cut(s)	303, 2060
BslI	CCNNNNNNNGG	2 cut(s)	86, 736
BsmFI	GGGAC	2 cut(s)	303, 2060
BsmI	GAATGC	1 cut(s)	2298
BsnI	GGCC	6 cut(s)	1343, 1605, 1701, 1841, 1912, 2011
BsoBI	CYCGRG	2 cut(s)	1200, 2556
Bsp1286I	GDGCHC	4 cut(s)	36, 609, 699, 2377
Bsp1407I	TGTACA	2 cut(s)	367, 979
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	7 cut(s)	702, 1147, 1265, 1308, 1344, 1550, 2053
BspANI	GGCC	6 cut(s)	1343, 1605, 1701, 1841, 1912, 2011
BspCNI	CTCAG	7 cut(s)	349, 475, 751, 1111, 1305, 1498, 1750
BspFNI	CGCG	2 cut(s)	176, 279
BspHI	TCATGA	2 cut(s)	169, 1596
BspLI	GGNNCC	5 cut(s)	318, 319, 662, 1379, 2563
BspMAI	CTGCAG	3 cut(s)	1630, 1639, 2398
BspMI	ACCTGC	2 cut(s)	139, 607
BspPI	GGATC	7 cut(s)	429, 655, 668, 676, 2227, 2556, 2569
BspT107I	GGYRCC	1 cut(s)	1377
BspTI	CTTAAG	2 cut(s)	1232, 1786
BsrBI	CCGCTC	1 cut(s)	704
BsrDI	GCAATG	3 cut(s)	272, 345, 1766
BsrFI	RCCGGY	1 cut(s)	1671
BsrGI	TGTACA	2 cut(s)	367, 979
BsrI	ACTGG	3 cut(s)	416, 958, 1853
BssAI	RCCGGY	1 cut(s)	1671
BssECI	CCNNGG	4 cut(s)	27, 664, 876, 2511
BssNI	GRCGYC	4 cut(s)	141, 526, 1378, 2456
BssSI	CACGAG	3 cut(s)	1166, 1917, 2293
BssT1I	CCWWGG	2 cut(s)	27, 876
Bst2BI	CACGAG	3 cut(s)	1166, 1917, 2293
Bst2UI	CCWGG	3 cut(s)	145, 453, 666
Bst4CI	ACNGT	5 cut(s)	46, 475, 1510, 1930, 2440
BstACI	GRCGYC	4 cut(s)	141, 526, 1378, 2456
BstAFI	CTTAAG	2 cut(s)	1232, 1786
BstAPI	GCANNNNNTGC	2 cut(s)	1391, 1634
BstAUI	TGTACA	2 cut(s)	367, 979
BstBAI	YACGTR	1 cut(s)	2285
BstC8I	GCNNGC	7 cut(s)	102, 514, 678, 1351, 1914, 2080, 2349
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	1060
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	9 cut(s)	102, 436, 886, 1273, 1404, 1489, 1694, 2361, 2545
BstFNI	CGCG	2 cut(s)	176, 279
BstH2I	RGCGCY	3 cut(s)	1381, 1835, 1892
BstHHI	GCGC	4 cut(s)	279, 1380, 1834, 1891
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	3 cut(s)	145, 453, 666
BstNSI	RCATGY	1 cut(s)	2053
BstPI	GGTNACC	1 cut(s)	1060
BstSCI	CCNGG	5 cut(s)	143, 451, 664, 1008, 1407
BstSFI	CTRYAG	4 cut(s)	116, 1626, 1635, 2394
BstSLI	GKGCMC	1 cut(s)	2377
BstUI	CGCG	2 cut(s)	176, 279
BstV2I	GAAGAC	2 cut(s)	1046, 1138
BstX2I	RGATCY	4 cut(s)	660, 668, 1656, 2561
BstYI	RGATCY	4 cut(s)	660, 668, 1656, 2561
Bsu36I	CCTNAGG	2 cut(s)	483, 1455
BsuRI	GGCC	6 cut(s)	1343, 1605, 1701, 1841, 1912, 2011
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	1317
BtsCI	GGATG	9 cut(s)	102, 436, 886, 1273, 1404, 1489, 1694, 2361, 2545
BtsI	GCAGTG	1 cut(s)	1731
BtsIMutI	CAGTG	4 cut(s)	42, 1310, 1515, 1731
BveI	ACCTGC	2 cut(s)	139, 607
Cac8I	GCNNGC	7 cut(s)	102, 514, 678, 1351, 1914, 2080, 2349
CaiI	CAGNNNCTG	3 cut(s)	1391, 1634, 1982
CciI	TCATGA	2 cut(s)	169, 1596
CfoI	GCGC	4 cut(s)	279, 1380, 1834, 1891
Cfr10I	RCCGGY	1 cut(s)	1671
Cfr13I	GGNCC	3 cut(s)	317, 1228, 2010
CseI	GACGC	4 cut(s)	149, 182, 1289, 2445
Csp6I	GTAC	5 cut(s)	230, 368, 980, 1740, 1951
CviQI	GTAC	5 cut(s)	230, 368, 980, 1740, 1951
DinI	GGCGCC	1 cut(s)	1379
DrdI	GACNNNNNNGTC	1 cut(s)	2062
DseDI	GACNNNNNNGTC	1 cut(s)	2062
EciI	GGCGGA	1 cut(s)	1136
Ecl136II	GAGCTC	2 cut(s)	34, 607
Eco130I	CCWWGG	2 cut(s)	27, 876
Eco147I	AGGCCT	3 cut(s)	1701, 1841, 1912
Eco24I	GRGCYC	2 cut(s)	36, 609
Eco32I	GATATC	1 cut(s)	2488
Eco47I	GGWCC	2 cut(s)	317, 1228
Eco53kI	GAGCTC	2 cut(s)	34, 607
Eco57I	CTGAAG	8 cut(s)	279, 402, 671, 1040, 1464, 1487, 1563, 1638
Eco81I	CCTNAGG	2 cut(s)	483, 1455
Eco88I	CYCGRG	2 cut(s)	1200, 2556
Eco91I	GGTNACC	1 cut(s)	1060
EcoICRI	GAGCTC	2 cut(s)	34, 607
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	2 cut(s)	317, 1228
EcoO65I	GGTNACC	1 cut(s)	1060
EcoRI	GAATTC	4 cut(s)	430, 718, 1188, 1317
EcoRII	CCWGG	3 cut(s)	143, 451, 664
EcoRV	GATATC	1 cut(s)	2488
EcoT14I	CCWWGG	2 cut(s)	27, 876
EcoT22I	ATGCAT	1 cut(s)	2363
EcoT38I	GRGCYC	2 cut(s)	36, 609
EgeI	GGCGCC	1 cut(s)	1379
EheI	GGCGCC	1 cut(s)	1379
ErhI	CCWWGG	2 cut(s)	27, 876
FalI	AAGNNNNNCTT	2 cut(s)	1066, 1098
FaqI	GGGAC	2 cut(s)	303, 2060
FauNDI	CATATG	1 cut(s)	1222
FbaI	TGATCA	1 cut(s)	2494
FblI	GTMKAC	1 cut(s)	939
FokI	GGATG	9 cut(s)	109, 423, 893, 1280, 1391, 1476, 1701, 2348, 2552
FriOI	GRGCYC	2 cut(s)	36, 609
FspBI	CTAG	8 cut(s)	137, 188, 783, 1251, 1775, 2138, 2196, 2621
GlaI	GCGC	4 cut(s)	278, 1379, 1833, 1890
GsaI	CCCAGC	1 cut(s)	1385
GsuI	CTGGAG	3 cut(s)	20, 694, 1856
HaeII	RGCGCY	3 cut(s)	1381, 1835, 1892
HaeIII	GGCC	6 cut(s)	1343, 1605, 1701, 1841, 1912, 2011
HapII	CCGG	3 cut(s)	1010, 1408, 1672
HgaI	GACGC	4 cut(s)	149, 182, 1289, 2445
HhaI	GCGC	4 cut(s)	279, 1380, 1834, 1891
Hin1I	GRCGYC	4 cut(s)	141, 526, 1378, 2456
Hin6I	GCGC	4 cut(s)	277, 1378, 1832, 1889
HinP1I	GCGC	4 cut(s)	277, 1378, 1832, 1889
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	1 cut(s)	261
HpaII	CCGG	3 cut(s)	1010, 1408, 1672
HphI	GGTGA	5 cut(s)	677, 691, 1072, 1745, 2162
Hpy166II	GTNNAC	6 cut(s)	370, 409, 940, 1562, 1805, 2375
Hpy8I	GTNNAC	6 cut(s)	370, 409, 940, 1562, 1805, 2375
Hpy99I	CGWCG	4 cut(s)	86, 89, 531, 941
HpyAV	CCTTC	9 cut(s)	264, 889, 1068, 1587, 1691, 1730, 2100, 2400, 2485
HpyCH4III	ACNGT	5 cut(s)	46, 475, 1510, 1930, 2440
HpyCH4IV	ACGT	4 cut(s)	372, 526, 936, 2284
HpySE526I	ACGT	4 cut(s)	372, 526, 936, 2284
Hsp92I	GRCGYC	4 cut(s)	141, 526, 1378, 2456
HspAI	GCGC	4 cut(s)	277, 1378, 1832, 1889
KasI	GGCGCC	1 cut(s)	1377
KflI	GGGWCCC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	2494
LmnI	GCTCC	6 cut(s)	31, 39, 212, 613, 1526, 2600
MaeI	CTAG	8 cut(s)	137, 188, 783, 1251, 1775, 2138, 2196, 2621
MaeII	ACGT	4 cut(s)	372, 526, 936, 2284
MaeIII	GTNAC	3 cut(s)	465, 1060, 1966
MbiI	CCGCTC	1 cut(s)	704
MfeI	CAATTG	1 cut(s)	2124
MflI	RGATCY	4 cut(s)	660, 668, 1656, 2561
MhlI	GDGCHC	4 cut(s)	36, 609, 699, 2377
Mly113I	GGCGCC	1 cut(s)	1378
MlyI	GAGTC	4 cut(s)	275, 1169, 1557, 2072
Mph1103I	ATGCAT	1 cut(s)	2363
MroXI	GAANNNNTTC	2 cut(s)	264, 1078
MslI	CAYNNNNRTG	1 cut(s)	2356
MspA1I	CMGCKG	2 cut(s)	743, 1634
MspCI	CTTAAG	2 cut(s)	1232, 1786
MspI	CCGG	3 cut(s)	1010, 1408, 1672
MspR9I	CCNGG	5 cut(s)	145, 453, 666, 1010, 1409
MunI	CAATTG	1 cut(s)	2124
Mva1269I	GAATGC	1 cut(s)	2298
MvaI	CCWGG	3 cut(s)	145, 453, 666
MvnI	CGCG	2 cut(s)	176, 279
NarI	GGCGCC	1 cut(s)	1378
NciI	CCSGG	2 cut(s)	1010, 1409
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	1222
NlaIV	GGNNCC	5 cut(s)	318, 319, 662, 1379, 2563
NmeAIII	GCCGAG	1 cut(s)	2099
NmuCI	GTSAC	1 cut(s)	1060
NsiI	ATGCAT	1 cut(s)	2363
NspI	RCATGY	1 cut(s)	2053
PaeR7I	CTCGAG	2 cut(s)	1200, 2556
PagI	TCATGA	2 cut(s)	169, 1596
PceI	AGGCCT	3 cut(s)	1701, 1841, 1912
PcsI	WCGNNNNNNNCGW	1 cut(s)	1164
PctI	GAATGC	1 cut(s)	2298
PdmI	GAANNNNTTC	2 cut(s)	264, 1078
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	4 cut(s)	275, 1168, 1557, 2071
PluTI	GGCGCC	1 cut(s)	1381
PpsI	GAGTC	4 cut(s)	275, 1168, 1557, 2071
Ppu21I	YACGTR	1 cut(s)	2285
PpuMI	RGGWCCY	2 cut(s)	317, 1228
PsiI	TTATAA	1 cut(s)	2207
Psp124BI	GAGCTC	2 cut(s)	36, 609
Psp5II	RGGWCCY	2 cut(s)	317, 1228
Psp6I	CCWGG	3 cut(s)	143, 451, 664
PspEI	GGTNACC	1 cut(s)	1060
PspFI	CCCAGC	1 cut(s)	1381
PspGI	CCWGG	3 cut(s)	143, 451, 664
PspN4I	GGNNCC	5 cut(s)	318, 319, 662, 1379, 2563
PspPI	GGNCC	3 cut(s)	317, 1228, 2010
PspPPI	RGGWCCY	2 cut(s)	317, 1228
PspXI	VCTCGAGB	1 cut(s)	2556
PstI	CTGCAG	3 cut(s)	1630, 1639, 2398
PstNI	CAGNNNCTG	3 cut(s)	1391, 1634, 1982
PsuI	RGATCY	4 cut(s)	660, 668, 1656, 2561
PvuI	CGATCG	1 cut(s)	109
PvuII	CAGCTG	2 cut(s)	743, 1634
RsaI	GTAC	5 cut(s)	231, 369, 981, 1741, 1952
RsaNI	GTAC	5 cut(s)	230, 368, 980, 1740, 1951
RseI	CAYNNNNRTG	1 cut(s)	2356
SacI	GAGCTC	2 cut(s)	36, 609
SalI	GTCGAC	1 cut(s)	938
Sau96I	GGNCC	3 cut(s)	317, 1228, 2010
SchI	GAGTC	4 cut(s)	275, 1169, 1557, 2072
ScrFI	CCNGG	5 cut(s)	145, 453, 666, 1010, 1409
SduI	GDGCHC	4 cut(s)	36, 609, 699, 2377
SfcI	CTRYAG	4 cut(s)	116, 1626, 1635, 2394
SfoI	GGCGCC	1 cut(s)	1379
Sfr274I	CTCGAG	2 cut(s)	1200, 2556
SinI	GGWCC	2 cut(s)	317, 1228
SlaI	CTCGAG	2 cut(s)	1200, 2556
SmiMI	CAYNNNNRTG	1 cut(s)	2356
SmlI	CTYRAG	7 cut(s)	608, 623, 851, 1200, 1232, 1786, 2556
SmoI	CTYRAG	7 cut(s)	608, 623, 851, 1200, 1232, 1786, 2556
SseBI	AGGCCT	3 cut(s)	1701, 1841, 1912
SsiI	CCGC	7 cut(s)	702, 1147, 1265, 1308, 1344, 1550, 2053
SspDI	GGCGCC	1 cut(s)	1377
SspI	AATATT	2 cut(s)	1016, 2469
SspMI	CTAG	8 cut(s)	137, 188, 783, 1251, 1775, 2138, 2196, 2621
SstI	GAGCTC	2 cut(s)	36, 609
StuI	AGGCCT	3 cut(s)	1701, 1841, 1912
StyD4I	CCNGG	5 cut(s)	143, 451, 664, 1008, 1407
StyI	CCWWGG	2 cut(s)	27, 876
TaaI	ACNGT	5 cut(s)	46, 475, 1510, 1930, 2440
TaiI	ACGT	4 cut(s)	375, 529, 939, 2287
TaqI	TCGA	6 cut(s)	907, 939, 1201, 1779, 2354, 2557
TatI	WGTACW	2 cut(s)	367, 979
TauI	GCSGC	3 cut(s)	1310, 1346, 1553
TscAI	CASTG	4 cut(s)	49, 1317, 1515, 1731
TseFI	GTSAC	1 cut(s)	1060
Tsp45I	GTSAC	1 cut(s)	1060
TspGWI	ACGGA	1 cut(s)	2354
TspRI	CASTG	4 cut(s)	49, 1317, 1515, 1731
Vha464I	CTTAAG	2 cut(s)	1232, 1786
VneI	GTGCAC	1 cut(s)	2373
VpaK11BI	GGWCC	2 cut(s)	317, 1228
XagI	CCTNNNNNAGG	1 cut(s)	734
XapI	RAATTY	7 cut(s)	430, 718, 1188, 1317, 2251, 2306, 2461
XbaI	TCTAGA	2 cut(s)	187, 782
XceI	RCATGY	1 cut(s)	2053
XhoI	CTCGAG	2 cut(s)	1200, 2556
XmiI	GTMKAC	1 cut(s)	939
XmnI	GAANNNNTTC	2 cut(s)	264, 1078
XspI	CTAG	8 cut(s)	137, 188, 783, 1251, 1775, 2138, 2196, 2621
ZraI	GACGTC	1 cut(s)	527
Zsp2I	ATGCAT	1 cut(s)	2363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.