Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Forward (+)

66593943 .. 66604279

Gene Structure 10337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGCTGGACTACCAGATTAGCAAAACCATGGAGCTCCAGAACACTGTGAAAGAAGCCCTAAACGCACTCTACCACCACCCCGACGACGGCGTTCGGATGCAAGCCGATCGCTTTCTACAGGACTTTCAGCGAACCCTAGACGCCTGGCAGGTACAACGAGATTTTGAAGAACTACCTTCTGAAGCTTTTCGCCCATTGCGCGATTCCTTAAATAACTTACTGAGAGAGTTCCATAAGGGTCCCCCTAAAGTCAGAACTCAGATTAGCATTGCTGTTGCTGCTTTAGCTGTACACGTTCCTGCTGAAGATTGGGGGGATGGTGGTATAGTGAACTGGCTTCGGGATGAGATGAATTCGCATCCAGAATATATACCTGGATTTTTAGAGTTACTAACAGTTTTGCCTGAGGAAGTATTCAACTACAAGATAGCAGCTCGCCCAGAAAGACGTCGCCAATTTGAGAAAGAGCTTACTTCTCAAATGGAGGTTGCTCTTAACATCTTGACAGCCTGTTTGAATATCAATGAGCTCAAGGAGCAGGTTCTTGAGGCATTTGCTTCTTGGCTTCGGCTGAAGCATGGGATCCCTGGATCTTTGCTTGCATCTCACCCATTGGTGCTCACAGCTCTCTCCAGCTTGAATTCTGAACTCCTTTCAGAGGCAGCTGTAAATGTTATTTCTGAGTTGATACACTATACGACATCTAGAGAATCTGGTGGTGTGCAAGTTCAAATGCCTTTAATTCAAGTCATAGTTCCCCAAGTGATGAATCTCAAGGCACAGCTTAGAGACTCTTCCAAGGATGAAGAAGATGTGAAGGCTATTGCTCGATTATTTGCTGACATGGGGGATTCATACGTCGACCTGATTGCAACTGGTTCTGATGAATCAAAGTTGATTGTACAAGCATTATTGGAAGTTGCTGCACACCCGGAATATTATATAGCTTCCATGACATTCAATTTTTGGCATAGTCTTCAGGTGACTTTGACAAGAAGGGATTCTTATATTTCGTTGGTTAATGAATCCACCATTGAATCTGAGAAAAATAGAAGACTGCATATATTCCGCCCTGCTTACGAGTCGCTCGTGTCCTTAGTTAGCTTCCGAATTCAATATCCTCGAGATTATCAAGACCTGTCATATGAGGACCTTAAGGAGTTCAAGCAGACTAGATATGCTGTTGCGGATGTCTTAATTGACGCAGCATCAGTTTTAGGAGGCGATGCCGCACTGAGAATTCTTTACATGAAACTTGATGAGGCCGCAGCCTGCTGTCAGAATGAAGAAAGTGAATGGCGCCCAGCAGAAGCTGCTTTATTTGGCATCCGGGCTATATCAAATTATGTATCAGTAGTTGAAGCTGAAGTAATGCCTAAGGTCATGGGAAGACTTCTAAAACTACCTCAGCATCCCCAACTACTTCAGACAGTGTGCTTAACAATAGGAGCTTATTCAAAATGGCTTGATGCGGCATCTGTTGGACTCTCCATACTGCCTTCAGTTATAGATGTCCTCATGAGTGGCCTTGCTAAATCTGAAGATTCTGCAGCAGCTGCAGCTTTGGCATTTCGGCAGATCTGTGATGATTGCCGGTTAAAGCTCTGTGGATGTTTGGAAGGCCTTTTCCATATATATCACAGGGCAGTGAATGGTGAAGGTACTTTGAAAGTTTGTGCTGAGGATTCATTGCATCTAGTCGAAGCCTTAAGCAAGGTTATTAGTGAACTTCCCCCAGACCAAGCTAAGAGGGCGCTGGAGGCCTTGTGTTTGCCAGTCGTTAGTCCTTTACAGGAAGTTCTTAGCCAAGCGCCAGAGATGCTAAATAACAGGCCTGCTCGTGATTTCACAGTTCATATTGATCGGTTTGGGTACATATTTAGATATGTAACCCATGCAGAAGCTGTGGCAGATGCAATCCAGAGGCTTTGGCCCATTTTCAAAGCCATCTTTGATCTTCGTGCTTGGGACATGCGGACAATGGAGTCTATTTGCCGAGCTTGCAAATACGCTGTGAGAACTTCTGGAAGGTGCATGGGAACGACAATTGGAGAAATGCTAGAGAAGATTCAAGAATTATATAAACAGCATCACCAACCATGCTTCCTTTATCTCTCTAGTGAAGTTATAAAGATATTTGGCTCAGACCCGTCGTGTGCTGATTATTTGAAAAATTTGATTGAATCACTCTTTCAGCACACAACACATATTCTCACGAGCATTCAAGATTTTACTTCCAGACCAGATATAGCAGATGATTGCTTTCTGCTCGCATCGAGATGCATCCGTTATTGTGCACACTTGTTTATTCCTTCTGCAGCATTTCCAGCATTAGTAGATTGCTCATTGATTGGCATTACAGTTCAACACAGGGAGGCGTCAAATTCCATATTGACCTTCTTATCAGATATCTTTGATCATGCAAACTCTACTGAGGGGGCAAAATACTTACCCATCAGGGATGCTGTAATTATTCCTCGAGGATCCAGCATGACAAGAGTTTTGATTGCTGCATTGACAGGAGCAATTCCAAGCTCTCGCCTAGAAAATGTAACTTACACACTGCTATCACTATCTCGAACATACGGAGCACAGTCGGTGGAGTGGGCCAGGGAGAGTGTTTCATTAATTCCTTTGACGGCTGTGAGAGAGGTTGAGCGTGCAAGATTCTTGCAAGCATTGTCAGATGCTGCAGCTGGGGTTAATGTCAATGCCCTTTCAGTTCCACTCGAGGAGCTATCAGATGTTTGCCGGCGTAACCGTACAGTCATGGAGATCGTTCAAGGAGCTTTGAGGCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

935

Amino Acids

104.55

Weight (kDa)

5.47

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	81 - 226	3.2e-21	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	268 - 335	4.6e-15	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_3rd	PF24140	456 - 545	6.1e-08	Transportin-3/Importin-13 third TPR domain
TPR_TNPO3_IPO13_4th	PF24139	638 - 738	1.1e-18	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2129
AasI	GACNNNNNNGTC	1 cut(s)	1984
AatII	GACGTC	1 cut(s)	451
AbsI	CCTCGAGG	1 cut(s)	2478
Acc36I	ACCTGC	2 cut(s)	139, 529
AccB1I	GGYRCC	1 cut(s)	1299
AccI	GTMKAC	1 cut(s)	861
AccII	CGCG	1 cut(s)	201
AciI	CCGC	6 cut(s)	1069, 1187, 1230, 1266, 1472, 1975
AclWI	GGATC	5 cut(s)	577, 590, 598, 2478, 2491
AcsI	RAATTY	6 cut(s)	352, 640, 1110, 1239, 2173, 2383
AcuI	CTGAAG	8 cut(s)	201, 324, 593, 962, 1386, 1409, 1485, 1560
AcyI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
AfaI	GTAC	6 cut(s)	153, 291, 903, 1663, 1874, 2764
AfiI	CCNNNNNNNGG	2 cut(s)	86, 658
AflII	CTTAAG	2 cut(s)	1154, 1708
AflIII	ACRYGT	1 cut(s)	292
AjnI	CCWGG	4 cut(s)	143, 373, 586, 2609
Alw21I	GWGCWC	5 cut(s)	36, 531, 621, 2299, 2593
Alw26I	GTCTC	1 cut(s)	783
Alw44I	GTGCAC	1 cut(s)	2295
AlwI	GGATC	5 cut(s)	577, 590, 598, 2478, 2491
AlwNI	CAGNNNCTG	4 cut(s)	1313, 1556, 1904, 2690
Ama87I	CYCGRG	3 cut(s)	1122, 2478, 2729
AoxI	GGCC	8 cut(s)	1263, 1525, 1621, 1761, 1832, 1931, 2607, 2795
ApaLI	GTGCAC	1 cut(s)	2295
ApoI	RAATTY	6 cut(s)	352, 640, 1110, 1239, 2173, 2383
ArsI	GACNNNNNNTTYG	4 cut(s)	496, 528, 2485, 2517
AseI	ATTAAT	1 cut(s)	2627
Asp700I	GAANNNNTTC	2 cut(s)	186, 1000
AspLEI	GCGC	4 cut(s)	201, 1302, 1756, 1813
AspS9I	GGNCC	4 cut(s)	239, 1150, 1932, 2607
AsuC2I	CCSGG	2 cut(s)	932, 1331
AsuHPI	GGTGA	4 cut(s)	599, 994, 1667, 2084
AvaI	CYCGRG	3 cut(s)	1122, 2478, 2729
AvaII	GGWCC	2 cut(s)	239, 1150
AxyI	CCTNAGG	2 cut(s)	405, 1377
BaeGI	GKGCMC	1 cut(s)	2299
BamHI	GGATCC	2 cut(s)	582, 2483
BanI	GGYRCC	1 cut(s)	1299
BanII	GRGCYC	2 cut(s)	36, 531
BauI	CACGAG	3 cut(s)	1088, 1839, 2215
BbsI	GAAGAC	3 cut(s)	968, 1060, 1396
Bbv12I	GWGCWC	5 cut(s)	36, 531, 621, 2299, 2593
BbvCI	CCTCAGC	2 cut(s)	1407, 1680
BccI	CCATC	3 cut(s)	311, 1955, 2462
BceAI	ACGGC	2 cut(s)	103, 2655
BcgI	CGANNNNNNTGC	4 cut(s)	89, 123, 851, 885
BciT130I	CCWGG	4 cut(s)	145, 375, 588, 2611
BclI	TGATCA	1 cut(s)	2416
BcnI	CCSGG	2 cut(s)	932, 1331
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
BfmI	CTRYAG	5 cut(s)	116, 1548, 1557, 2316, 2691
BfoI	RGCGCY	3 cut(s)	1303, 1757, 1814
BfrI	CTTAAG	2 cut(s)	1154, 1708
BfuAI	ACCTGC	2 cut(s)	139, 529
BglII	AGATCT	1 cut(s)	1578
Bme1390I	CCNGG	6 cut(s)	145, 375, 588, 932, 1331, 2611
Bme18I	GGWCC	2 cut(s)	239, 1150
BmeT110I	CYCGRG	3 cut(s)	1122, 2478, 2729
BmgT120I	GGNCC	4 cut(s)	239, 1150, 1932, 2607
BmiI	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
BmrFI	CCNGG	6 cut(s)	145, 375, 588, 932, 1331, 2611
BpiI	GAAGAC	3 cut(s)	968, 1060, 1396
BpmI	CTGGAG	3 cut(s)	20, 616, 1778
Bpu10I	CCTNAGC	2 cut(s)	1407, 1680
BpuEI	CTTGAG	3 cut(s)	515, 566, 758
BpuMI	CCSGG	2 cut(s)	932, 1331
BsaHI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
BsaJI	CCNNGG	4 cut(s)	27, 586, 798, 2610
BsaXI	ACNNNNNCTCC	2 cut(s)	1751, 1781
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 658
Bse118I	RCCGGY	2 cut(s)	1593, 2751
Bse1I	ACTGG	3 cut(s)	338, 880, 1775
Bse21I	CCTNAGG	2 cut(s)	405, 1377
Bse3DI	GCAATG	3 cut(s)	194, 267, 1688
BseBI	CCWGG	4 cut(s)	145, 375, 588, 2611
BseDI	CCNNGG	4 cut(s)	27, 586, 798, 2610
BseLI	CCNNNNNNNGG	2 cut(s)	86, 658
BseMI	GCAATG	3 cut(s)	194, 267, 1688
BseNI	ACTGG	3 cut(s)	338, 880, 1775
BseRI	GAGGAG	1 cut(s)	2747
BseSI	GKGCMC	1 cut(s)	2299
BseYI	CCCAGC	2 cut(s)	1303, 2696
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	8 cut(s)	1265, 1527, 1623, 1763, 1834, 1933, 2609, 2797
BshNI	GGYRCC	1 cut(s)	1299
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	5 cut(s)	36, 531, 621, 2299, 2593
BsiHKCI	CYCGRG	3 cut(s)	1122, 2478, 2729
BsiSI	CCGG	4 cut(s)	932, 1330, 1594, 2752
BslFI	GGGAC	2 cut(s)	225, 1982
BslI	CCNNNNNNNGG	2 cut(s)	86, 658
BsmAI	GTCTC	1 cut(s)	783
BsmFI	GGGAC	2 cut(s)	225, 1982
BsmI	GAATGC	1 cut(s)	2220
BsnI	GGCC	8 cut(s)	1265, 1527, 1623, 1763, 1834, 1933, 2609, 2797
BsoBI	CYCGRG	3 cut(s)	1122, 2478, 2729
Bsp1286I	GDGCHC	5 cut(s)	36, 531, 621, 2299, 2593
Bsp1407I	TGTACA	2 cut(s)	289, 901
Bsp143I	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	6 cut(s)	1069, 1187, 1230, 1266, 1472, 1975
BspANI	GGCC	8 cut(s)	1265, 1527, 1623, 1763, 1834, 1933, 2609, 2797
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	1518
BspLI	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
BspMAI	CTGCAG	4 cut(s)	1552, 1561, 2320, 2695
BspMI	ACCTGC	2 cut(s)	139, 529
BspPI	GGATC	5 cut(s)	577, 590, 598, 2478, 2491
BspT107I	GGYRCC	1 cut(s)	1299
BspTI	CTTAAG	2 cut(s)	1154, 1708
BsrDI	GCAATG	3 cut(s)	194, 267, 1688
BsrFI	RCCGGY	2 cut(s)	1593, 2751
BsrGI	TGTACA	2 cut(s)	289, 901
BsrI	ACTGG	3 cut(s)	338, 880, 1775
BssAI	RCCGGY	2 cut(s)	1593, 2751
BssECI	CCNNGG	4 cut(s)	27, 586, 798, 2610
BssMI	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
BssNI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
BssSI	CACGAG	3 cut(s)	1088, 1839, 2215
BssT1I	CCWWGG	2 cut(s)	27, 798
Bst2BI	CACGAG	3 cut(s)	1088, 1839, 2215
Bst2UI	CCWGG	4 cut(s)	145, 375, 588, 2611
Bst4CI	ACNGT	8 cut(s)	46, 397, 1432, 1852, 2362, 2595, 2762, 2767
Bst6I	CTCTTC	1 cut(s)	799
BstACI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
BstAFI	CTTAAG	2 cut(s)	1154, 1708
BstAPI	GCANNNNNTGC	2 cut(s)	1313, 1556
BstAUI	TGTACA	2 cut(s)	289, 901
BstDSI	CCRYGG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	3 cut(s)	1303, 1757, 1814
BstHHI	GCGC	4 cut(s)	201, 1302, 1756, 1813
BstKTI	GATC	9 cut(s)	109, 585, 593, 1581, 1864, 1957, 2419, 2486, 2778
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	4 cut(s)	145, 375, 588, 2611
BstNSI	RCATGY	1 cut(s)	1975
BstSCI	CCNGG	6 cut(s)	143, 373, 586, 930, 1329, 2609
BstSFI	CTRYAG	5 cut(s)	116, 1548, 1557, 2316, 2691
BstSLI	GKGCMC	1 cut(s)	2299
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	3 cut(s)	968, 1060, 1396
BstX2I	RGATCY	4 cut(s)	582, 590, 1578, 2483
BstYI	RGATCY	4 cut(s)	582, 590, 1578, 2483
Bsu36I	CCTNAGG	2 cut(s)	405, 1377
BsuRI	GGCC	8 cut(s)	1265, 1527, 1623, 1763, 1834, 1933, 2609, 2797
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	1239
BtsI	GCAGTG	2 cut(s)	1653, 2561
BtsIMutI	CAGTG	5 cut(s)	42, 1232, 1437, 1653, 2561
BveI	ACCTGC	2 cut(s)	139, 529
CaiI	CAGNNNCTG	4 cut(s)	1313, 1556, 1904, 2690
CciI	TCATGA	1 cut(s)	1518
CfoI	GCGC	4 cut(s)	201, 1302, 1756, 1813
Cfr10I	RCCGGY	2 cut(s)	1593, 2751
Cfr13I	GGNCC	4 cut(s)	239, 1150, 1932, 2607
CseI	GACGC	3 cut(s)	149, 1211, 2367
Csp6I	GTAC	6 cut(s)	152, 290, 902, 1662, 1873, 2763
CviQI	GTAC	6 cut(s)	152, 290, 902, 1662, 1873, 2763
DinI	GGCGCC	1 cut(s)	1301
DpnI	GATC	9 cut(s)	108, 584, 592, 1580, 1863, 1956, 2418, 2485, 2777
DpnII	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
DrdI	GACNNNNNNGTC	1 cut(s)	1984
DseDI	GACNNNNNNGTC	1 cut(s)	1984
Eam1104I	CTCTTC	1 cut(s)	799
EarI	CTCTTC	1 cut(s)	799
EciI	GGCGGA	1 cut(s)	1058
Ecl136II	GAGCTC	2 cut(s)	34, 529
Eco130I	CCWWGG	2 cut(s)	27, 798
Eco147I	AGGCCT	4 cut(s)	1623, 1763, 1834, 2797
Eco24I	GRGCYC	2 cut(s)	36, 531
Eco32I	GATATC	1 cut(s)	2410
Eco47I	GGWCC	2 cut(s)	239, 1150
Eco53kI	GAGCTC	2 cut(s)	34, 529
Eco57I	CTGAAG	8 cut(s)	201, 324, 593, 962, 1386, 1409, 1485, 1560
Eco81I	CCTNAGG	2 cut(s)	405, 1377
Eco88I	CYCGRG	3 cut(s)	1122, 2478, 2729
EcoICRI	GAGCTC	2 cut(s)	34, 529
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoO109I	RGGNCCY	2 cut(s)	239, 1150
EcoRI	GAATTC	4 cut(s)	352, 640, 1110, 1239
EcoRII	CCWGG	4 cut(s)	143, 373, 586, 2609
EcoRV	GATATC	1 cut(s)	2410
EcoT14I	CCWWGG	2 cut(s)	27, 798
EcoT22I	ATGCAT	1 cut(s)	2285
EcoT38I	GRGCYC	2 cut(s)	36, 531
EgeI	GGCGCC	1 cut(s)	1301
EheI	GGCGCC	1 cut(s)	1301
ErhI	CCWWGG	2 cut(s)	27, 798
FalI	AAGNNNNNCTT	2 cut(s)	988, 1020
FaqI	GGGAC	2 cut(s)	225, 1982
FauNDI	CATATG	1 cut(s)	1144
FbaI	TGATCA	1 cut(s)	2416
FblI	GTMKAC	1 cut(s)	861
FriOI	GRGCYC	2 cut(s)	36, 531
FspBI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
GlaI	GCGC	4 cut(s)	200, 1301, 1755, 1812
GsaI	CCCAGC	2 cut(s)	1307, 2700
GsuI	CTGGAG	3 cut(s)	20, 616, 1778
HaeII	RGCGCY	3 cut(s)	1303, 1757, 1814
HaeIII	GGCC	8 cut(s)	1265, 1527, 1623, 1763, 1834, 1933, 2609, 2797
HapII	CCGG	4 cut(s)	932, 1330, 1594, 2752
HgaI	GACGC	3 cut(s)	149, 1211, 2367
HhaI	GCGC	4 cut(s)	201, 1302, 1756, 1813
Hin1I	GRCGYC	4 cut(s)	141, 448, 1300, 2378
Hin6I	GCGC	4 cut(s)	199, 1300, 1754, 1811
HinP1I	GCGC	4 cut(s)	199, 1300, 1754, 1811
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	183
HpaII	CCGG	4 cut(s)	932, 1330, 1594, 2752
HphI	GGTGA	4 cut(s)	599, 994, 1667, 2084
Hpy166II	GTNNAC	5 cut(s)	292, 331, 862, 1727, 2297
Hpy8I	GTNNAC	5 cut(s)	292, 331, 862, 1727, 2297
Hpy99I	CGWCG	5 cut(s)	86, 89, 453, 863, 2155
HpyAV	CCTTC	9 cut(s)	186, 811, 990, 1509, 1613, 1652, 2022, 2322, 2407
HpyCH4III	ACNGT	8 cut(s)	46, 397, 1432, 1852, 2362, 2595, 2762, 2767
HpyCH4IV	ACGT	3 cut(s)	294, 448, 858
HpySE526I	ACGT	3 cut(s)	294, 448, 858
Hsp92I	GRCGYC	4 cut(s)	141, 448, 1300, 2378
HspAI	GCGC	4 cut(s)	199, 1300, 1754, 1811
KasI	GGCGCC	1 cut(s)	1299
KflI	GGGWCCC	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	2751
KroNI	GCCGGC	1 cut(s)	2753
Ksp22I	TGATCA	1 cut(s)	2416
Kzo9I	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
LmnI	GCTCC	8 cut(s)	31, 39, 535, 1448, 2522, 2588, 2734, 2786
MaeI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
MaeII	ACGT	3 cut(s)	294, 448, 858
MaeIII	GTNAC	5 cut(s)	387, 982, 1888, 2551, 2756
MalI	GATC	9 cut(s)	108, 584, 592, 1580, 1863, 1956, 2418, 2485, 2777
MboI	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
MfeI	CAATTG	1 cut(s)	2046
MflI	RGATCY	4 cut(s)	582, 590, 1578, 2483
MhlI	GDGCHC	5 cut(s)	36, 531, 621, 2299, 2593
Mly113I	GGCGCC	1 cut(s)	1300
MlyI	GAGTC	4 cut(s)	785, 1091, 1479, 1994
MmeI	TCCRAC	1 cut(s)	1462
Mph1103I	ATGCAT	1 cut(s)	2285
MroNI	GCCGGC	1 cut(s)	2751
MroXI	GAANNNNTTC	2 cut(s)	186, 1000
MslI	CAYNNNNRTG	1 cut(s)	2278
MspA1I	CMGCKG	3 cut(s)	665, 1556, 2696
MspCI	CTTAAG	2 cut(s)	1154, 1708
MspI	CCGG	4 cut(s)	932, 1330, 1594, 2752
MspR9I	CCNGG	6 cut(s)	145, 375, 588, 932, 1331, 2611
MunI	CAATTG	1 cut(s)	2046
Mva1269I	GAATGC	1 cut(s)	2220
MvaI	CCWGG	4 cut(s)	145, 375, 588, 2611
MvnI	CGCG	1 cut(s)	201
NaeI	GCCGGC	1 cut(s)	2753
NarI	GGCGCC	1 cut(s)	1300
NciI	CCSGG	2 cut(s)	932, 1331
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
NgoMIV	GCCGGC	1 cut(s)	2751
NlaIV	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
NmeAIII	GCCGAG	1 cut(s)	2021
NmuCI	GTSAC	1 cut(s)	982
NsiI	ATGCAT	1 cut(s)	2285
NspI	RCATGY	1 cut(s)	1975
PaeR7I	CTCGAG	3 cut(s)	1122, 2478, 2729
PagI	TCATGA	1 cut(s)	1518
PceI	AGGCCT	4 cut(s)	1623, 1763, 1834, 2797
PcsI	WCGNNNNNNNCGW	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	2220
PdiI	GCCGGC	1 cut(s)	2753
PdmI	GAANNNNTTC	2 cut(s)	186, 1000
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	4 cut(s)	785, 1090, 1479, 1993
PluTI	GGCGCC	1 cut(s)	1303
PpsI	GAGTC	4 cut(s)	785, 1090, 1479, 1993
PpuMI	RGGWCCY	2 cut(s)	239, 1150
PshBI	ATTAAT	1 cut(s)	2627
PsiI	TTATAA	1 cut(s)	2129
Psp124BI	GAGCTC	2 cut(s)	36, 531
Psp5II	RGGWCCY	2 cut(s)	239, 1150
Psp6I	CCWGG	4 cut(s)	143, 373, 586, 2609
PspFI	CCCAGC	2 cut(s)	1303, 2696
PspGI	CCWGG	4 cut(s)	143, 373, 586, 2609
PspN4I	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
PspPI	GGNCC	4 cut(s)	239, 1150, 1932, 2607
PspPPI	RGGWCCY	2 cut(s)	239, 1150
PspXI	VCTCGAGB	2 cut(s)	2478, 2729
PstI	CTGCAG	4 cut(s)	1552, 1561, 2320, 2695
PstNI	CAGNNNCTG	4 cut(s)	1313, 1556, 1904, 2690
PsuI	RGATCY	4 cut(s)	582, 590, 1578, 2483
PvuI	CGATCG	1 cut(s)	109
PvuII	CAGCTG	3 cut(s)	665, 1556, 2696
RsaI	GTAC	6 cut(s)	153, 291, 903, 1663, 1874, 2764
RsaNI	GTAC	6 cut(s)	152, 290, 902, 1662, 1873, 2763
RseI	CAYNNNNRTG	1 cut(s)	2278
SacI	GAGCTC	2 cut(s)	36, 531
SalI	GTCGAC	1 cut(s)	860
Sau3AI	GATC	9 cut(s)	106, 582, 590, 1578, 1861, 1954, 2416, 2483, 2775
Sau96I	GGNCC	4 cut(s)	239, 1150, 1932, 2607
SchI	GAGTC	4 cut(s)	785, 1091, 1479, 1994
ScrFI	CCNGG	6 cut(s)	145, 375, 588, 932, 1331, 2611
SduI	GDGCHC	5 cut(s)	36, 531, 621, 2299, 2593
SfcI	CTRYAG	5 cut(s)	116, 1548, 1557, 2316, 2691
SfoI	GGCGCC	1 cut(s)	1301
Sfr274I	CTCGAG	3 cut(s)	1122, 2478, 2729
SinI	GGWCC	2 cut(s)	239, 1150
SlaI	CTCGAG	3 cut(s)	1122, 2478, 2729
SmiMI	CAYNNNNRTG	1 cut(s)	2278
SmlI	CTYRAG	8 cut(s)	530, 545, 773, 1122, 1154, 1708, 2478, 2729
SmoI	CTYRAG	8 cut(s)	530, 545, 773, 1122, 1154, 1708, 2478, 2729
SseBI	AGGCCT	4 cut(s)	1623, 1763, 1834, 2797
SsiI	CCGC	6 cut(s)	1069, 1187, 1230, 1266, 1472, 1975
SspDI	GGCGCC	1 cut(s)	1299
SspI	AATATT	1 cut(s)	938
SspMI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
SstI	GAGCTC	2 cut(s)	36, 531
StuI	AGGCCT	4 cut(s)	1623, 1763, 1834, 2797
StyD4I	CCNGG	6 cut(s)	143, 373, 586, 930, 1329, 2609
StyI	CCWWGG	2 cut(s)	27, 798
TaaI	ACNGT	8 cut(s)	46, 397, 1432, 1852, 2362, 2595, 2762, 2767
TaiI	ACGT	3 cut(s)	297, 451, 861
TaqI	TCGA	8 cut(s)	829, 861, 1123, 1701, 2276, 2479, 2578, 2730
TatI	WGTACW	2 cut(s)	289, 901
TauI	GCSGC	3 cut(s)	1232, 1268, 1475
TscAI	CASTG	5 cut(s)	49, 1239, 1437, 1653, 2568
TseFI	GTSAC	1 cut(s)	982
Tsp45I	GTSAC	1 cut(s)	982
TspGWI	ACGGA	2 cut(s)	2276, 2601
TspRI	CASTG	5 cut(s)	49, 1239, 1437, 1653, 2568
Vha464I	CTTAAG	2 cut(s)	1154, 1708
VneI	GTGCAC	1 cut(s)	2295
VpaK11BI	GGWCC	2 cut(s)	239, 1150
VspI	ATTAAT	1 cut(s)	2627
XagI	CCTNNNNNAGG	1 cut(s)	656
XapI	RAATTY	6 cut(s)	352, 640, 1110, 1239, 2173, 2383
XbaI	TCTAGA	1 cut(s)	704
XceI	RCATGY	1 cut(s)	1975
XhoI	CTCGAG	3 cut(s)	1122, 2478, 2729
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	2 cut(s)	186, 1000
XspI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
ZraI	GACGTC	1 cut(s)	449
Zsp2I	ATGCAT	1 cut(s)	2285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.