Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

2285022 .. 2295464

Gene Structure 10443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG031000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGCTGGACTACCAGATTAGCAAAACCATGGAGCTCCAGAACACTGTGAAAGAAGCCCTAAACGCACTCTACCACCACCCCGACGACGGCGTTCGGATGCAAGCCGATCGCTTTCTACAGGACTTTCAGCGAACCCTAGACGCCTGGCAGGTACAACGAGATTTTGAAGAACTACCTTCTGAAGCTTTTCGCCCATTGCGCGATTCCTTAAATAACTTATTGAGAGAGTTCCATAAGGGTCCCCCTAAAGTCAGAACTCAGATTAGCATTGCTGTTGCTGCTTTAGCTGTACACGTTCCTGCTGAAGATTGGGGAGATGGTGGTATAGTGAACTGGCTTCGGGATCAGATGAATTCGCATCCAGAATATATACCTGGATTTTTAGAGTTACTAACAGTTTTGCCTGAGGAAGTATTCAACTACAAGATAGCAGCTCGCCCAGAAAGACGTCGCCAATTTGAGAAAGAGCTTACTTCTCAAATGGAGGTTGCTCTTAACATCTTGACAGCTTGTTTGAATATCAATGAGCTCAAGGAGCAGGTTCTTGAGGCATTTGCTTCTTGGCTTCGGCTGAAGCATGGGATCCCTGGATCTTTGCTTGCATCTCACCCATTGGTGCTCACAGCTCTCTCGAGCTTGAATTCTGAACTCCTTTCAGAGGCAGCTGTAAATGTTATTTCTGAGTTGATACACTATACGACATCTAGAGAATCTGGTGGTGTGCAAGTTCAAATGCCTTTAATTCAAGTCATTGTTCCCCAAGTGATGAATCTCAAGGCACAACTTAGAGATTCTTCCAAGGATGAAGAAGATGTGAAGGCTATTGCTCGATTATTTGCTGACATGGGGGATTCATACGTCGACCTGATTGCAACTGGTTCTGATGAATCAAAATTGATTGTACAAGCATTATTGGAAGTTGCTGCACACCCGGAATATTATATAGCTTCCATGACATTCAATTTTTGGCATAGTCTTCAGGTGACCTTGACAAGAAGGGATTCTTATATCTCGTTGGTTAATGAATCCACCATTGAATCTGAGAAAAATAGAAGGCTGCATATATTCCGCCCTGCTTACGAGTCGCTCGTGTCCTTAGTTAGCTTCCGAATTCAATATCCTCGAGATTATCAAGACCTGTCATATGAGGACCTTAAGGAGTTCAAGCAGACTAGATATGCTGTTGCGGATGTCTTAATTGACGCAGCATCAGTTTTAGGAGGCGATGCCGCACTGAGAATTCTTTACATGAAACTTGATGAGGCCGCAGCCTGCTGTCAGAATGAAGAAAGTGAATGGCGCCCAGCAGAAGCTGCTTTATTTGGCATCCGGGCTATATCAAATTATGTATCAGTAGTTGAAGCTGAAGTAATGCCTAAGGTCATGGGCAGACTTCTAAAACTACCTCAGCATCCCCAACTACTTCAGACAGTGTGCTTAACAATAGGAGCTTATTCAAAATGGCTTGATGCGGCATCTGGTGGACTCTCCATACTGCCTTCAGTTATAGATGTTCTCATGAGTGGCCTTGCTAAATCTGAAGACTCTGCAGCAGCTGCAGCTTTGGCATTTCGGCAGATCTGTGATGATTGCCGGTTAAAGCTCTGTGGATGTTTGGAAGGCCTTTTCCATATATATCACAGGGCAGTGAATGGTGAAGGTACTTTGAAAGTTTGTGCTGAGGATTCATTGCATCTAGTCGAAGCCTTAAGCAAGGTTATTAGTGAACTTCCCCCAGACCAAGCTAAGAGGGCGCTGGAGGCCTTGTGTTTGCCAGTCGTTAGTCCTTTACAGGAAGTTCTTAGCCAAGCGCCAGAGATGCTAAATAACAGGCCTGCTCGTGATTTCACAGTTCATATTGATCGGTTTGGGTACATCTTTAGATATGTAACCCATGCAGAAGCTGTGGCAGATGCAATCCAGAGGCTTTGGCCCATTTTCAAAGCCATCTTTGATCTTCGTGCTTGGGACATGCGGACAATGGAGTCTATTTGCCGAGCTTGCAAATACGCTGTGAGAACTTCTGGAAGGTGCATGGGAACGACAATTGGAGAAATGCTAGAGAAGATTCAAGAATTATATAAACAGCATCACCAACCATGCTTCCTTTATCTCTCTAGTGAAGTTATAAAGATATTTGGCTCAGACCCGTCATGTGCTGATTATTTGAAAAATTTGATTGAATCACTCTTTCAGCACACAACACGTATTCTCACGAGCATTCAAGAATTTACTTCCAGACCAGATATAGCAGATGATTGCTTTCTGCTCGCATCGAGATGCATCCGTTATTGTGCACACTTGTTTATTCCTTCTGCAGCATTTCCAGCATTAGTAGATTGCTCATTGATTGGCATTACAGTTCAACACAGGGAGGCGTCAAATTCAATATTGACCTTCTTATCAGATATCTTTGATCATGCAAACTCTACCGAGGGGGCAAAATACTTACCCATCAGGGATGCTGTAATTATTCCTCGAGGATCCCGCATGACAAGAGTTTTGATTGCTGCATTAACAGGAGCAATTCCAAGCTCTCGCCTAGAAAATGTAGTTTGTAATCCTTACTCATATTTTCAAACCCTTTCCTATGTGCTAACATTAACCATCATGGACATCTACGAGTTGTGTTTGGAATTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

881

Amino Acids

99.12

Weight (kDa)

5.39

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	81 - 226	3e-21	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	268 - 335	4.3e-15	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_3rd	PF24140	456 - 545	5.5e-08	Transportin-3/Importin-13 third TPR domain
TPR_TNPO3_IPO13_4th	PF24139	638 - 738	1e-18	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2129
AasI	GACNNNNNNGTC	1 cut(s)	1984
AatII	GACGTC	1 cut(s)	451
AbsI	CCTCGAGG	1 cut(s)	2478
Acc36I	ACCTGC	2 cut(s)	139, 529
AccB1I	GGYRCC	1 cut(s)	1299
AccI	GTMKAC	1 cut(s)	861
AccII	CGCG	1 cut(s)	201
AciI	CCGC	7 cut(s)	1069, 1187, 1230, 1266, 1472, 1975, 2488
AclWI	GGATC	6 cut(s)	351, 577, 590, 598, 2478, 2491
AcsI	RAATTY	8 cut(s)	352, 640, 1110, 1239, 2173, 2228, 2383, 2636
AcuI	CTGAAG	8 cut(s)	201, 324, 593, 962, 1386, 1409, 1485, 1560
AcyI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
AfaI	GTAC	5 cut(s)	153, 291, 903, 1663, 1874
AfiI	CCNNNNNNNGG	2 cut(s)	86, 658
AflII	CTTAAG	2 cut(s)	1154, 1708
AflIII	ACRYGT	2 cut(s)	292, 2204
AjnI	CCWGG	3 cut(s)	143, 373, 586
Alw21I	GWGCWC	4 cut(s)	36, 531, 621, 2299
Alw44I	GTGCAC	1 cut(s)	2295
AlwI	GGATC	6 cut(s)	351, 577, 590, 598, 2478, 2491
AlwNI	CAGNNNCTG	3 cut(s)	1313, 1556, 1904
Ama87I	CYCGRG	3 cut(s)	631, 1122, 2478
AoxI	GGCC	6 cut(s)	1263, 1525, 1621, 1761, 1832, 1931
ApaLI	GTGCAC	1 cut(s)	2295
ApoI	RAATTY	8 cut(s)	352, 640, 1110, 1239, 2173, 2228, 2383, 2636
ArsI	GACNNNNNNTTYG	4 cut(s)	496, 528, 2485, 2517
Asp700I	GAANNNNTTC	2 cut(s)	186, 1000
AspLEI	GCGC	4 cut(s)	201, 1302, 1756, 1813
AspS9I	GGNCC	3 cut(s)	239, 1150, 1932
AsuC2I	CCSGG	2 cut(s)	932, 1331
AsuHPI	GGTGA	4 cut(s)	599, 994, 1667, 2084
AvaI	CYCGRG	3 cut(s)	631, 1122, 2478
AvaII	GGWCC	2 cut(s)	239, 1150
AxyI	CCTNAGG	2 cut(s)	405, 1377
BaeGI	GKGCMC	1 cut(s)	2299
BamHI	GGATCC	2 cut(s)	582, 2483
BanI	GGYRCC	1 cut(s)	1299
BanII	GRGCYC	2 cut(s)	36, 531
BauI	CACGAG	3 cut(s)	1088, 1839, 2215
BbsI	GAAGAC	2 cut(s)	968, 1548
Bbv12I	GWGCWC	4 cut(s)	36, 531, 621, 2299
BbvCI	CCTCAGC	2 cut(s)	1407, 1680
BccI	CCATC	4 cut(s)	311, 1955, 2462, 2615
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	89, 123, 851, 885
BciT130I	CCWGG	3 cut(s)	145, 375, 588
BclI	TGATCA	1 cut(s)	2416
BcnI	CCSGG	2 cut(s)	932, 1331
BfaI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
BfmI	CTRYAG	4 cut(s)	116, 1548, 1557, 2316
BfoI	RGCGCY	3 cut(s)	1303, 1757, 1814
BfrI	CTTAAG	2 cut(s)	1154, 1708
BfuAI	ACCTGC	2 cut(s)	139, 529
BglII	AGATCT	1 cut(s)	1578
Bme1390I	CCNGG	5 cut(s)	145, 375, 588, 932, 1331
Bme18I	GGWCC	2 cut(s)	239, 1150
BmeT110I	CYCGRG	3 cut(s)	631, 1122, 2478
BmgT120I	GGNCC	3 cut(s)	239, 1150, 1932
BmiI	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
BmrFI	CCNGG	5 cut(s)	145, 375, 588, 932, 1331
BpiI	GAAGAC	2 cut(s)	968, 1548
BpmI	CTGGAG	2 cut(s)	20, 1778
Bpu10I	CCTNAGC	2 cut(s)	1407, 1680
BpuEI	CTTGAG	3 cut(s)	515, 566, 758
BpuMI	CCSGG	2 cut(s)	932, 1331
BsaAI	YACGTR	1 cut(s)	2207
BsaHI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
BsaJI	CCNNGG	4 cut(s)	27, 586, 798, 2433
BsaXI	ACNNNNNCTCC	2 cut(s)	1751, 1781
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 658
Bse118I	RCCGGY	1 cut(s)	1593
Bse1I	ACTGG	3 cut(s)	338, 880, 1775
Bse21I	CCTNAGG	2 cut(s)	405, 1377
Bse3DI	GCAATG	3 cut(s)	194, 267, 1688
BseBI	CCWGG	3 cut(s)	145, 375, 588
BseDI	CCNNGG	4 cut(s)	27, 586, 798, 2433
BseGI	GGATG	9 cut(s)	102, 358, 808, 1195, 1326, 1411, 1616, 2283, 2467
BseLI	CCNNNNNNNGG	2 cut(s)	86, 658
BseMI	GCAATG	3 cut(s)	194, 267, 1688
BseMII	CTCAG	8 cut(s)	272, 396, 672, 1032, 1226, 1421, 1671, 2157
BseNI	ACTGG	3 cut(s)	338, 880, 1775
BseSI	GKGCMC	1 cut(s)	2299
BseYI	CCCAGC	1 cut(s)	1303
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	1265, 1527, 1623, 1763, 1834, 1933
BshNI	GGYRCC	1 cut(s)	1299
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	4 cut(s)	36, 531, 621, 2299
BsiHKCI	CYCGRG	3 cut(s)	631, 1122, 2478
BsiSI	CCGG	3 cut(s)	932, 1330, 1594
BslFI	GGGAC	2 cut(s)	225, 1982
BslI	CCNNNNNNNGG	2 cut(s)	86, 658
BsmFI	GGGAC	2 cut(s)	225, 1982
BsmI	GAATGC	1 cut(s)	2220
BsnI	GGCC	6 cut(s)	1265, 1527, 1623, 1763, 1834, 1933
BsoBI	CYCGRG	3 cut(s)	631, 1122, 2478
Bsp1286I	GDGCHC	4 cut(s)	36, 531, 621, 2299
Bsp1407I	TGTACA	2 cut(s)	289, 901
Bsp143I	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	7 cut(s)	1069, 1187, 1230, 1266, 1472, 1975, 2488
BspANI	GGCC	6 cut(s)	1265, 1527, 1623, 1763, 1834, 1933
BspCNI	CTCAG	8 cut(s)	271, 397, 673, 1033, 1227, 1420, 1672, 2156
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	1518
BspLI	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
BspMAI	CTGCAG	3 cut(s)	1552, 1561, 2320
BspMI	ACCTGC	2 cut(s)	139, 529
BspPI	GGATC	6 cut(s)	351, 577, 590, 598, 2478, 2491
BspT107I	GGYRCC	1 cut(s)	1299
BspTI	CTTAAG	2 cut(s)	1154, 1708
BsrDI	GCAATG	3 cut(s)	194, 267, 1688
BsrFI	RCCGGY	1 cut(s)	1593
BsrGI	TGTACA	2 cut(s)	289, 901
BsrI	ACTGG	3 cut(s)	338, 880, 1775
BssAI	RCCGGY	1 cut(s)	1593
BssECI	CCNNGG	4 cut(s)	27, 586, 798, 2433
BssMI	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
BssNI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
BssSI	CACGAG	3 cut(s)	1088, 1839, 2215
BssT1I	CCWWGG	2 cut(s)	27, 798
Bst2BI	CACGAG	3 cut(s)	1088, 1839, 2215
Bst2UI	CCWGG	3 cut(s)	145, 375, 588
Bst4CI	ACNGT	5 cut(s)	46, 397, 1432, 1852, 2362
BstACI	GRCGYC	4 cut(s)	141, 448, 1300, 2378
BstAFI	CTTAAG	2 cut(s)	1154, 1708
BstAPI	GCANNNNNTGC	2 cut(s)	1313, 1556
BstAUI	TGTACA	2 cut(s)	289, 901
BstBAI	YACGTR	1 cut(s)	2207
BstC8I	GCNNGC	7 cut(s)	102, 436, 600, 1273, 1836, 2002, 2271
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	982
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	9 cut(s)	102, 358, 808, 1195, 1326, 1411, 1616, 2283, 2467
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	3 cut(s)	1303, 1757, 1814
BstHHI	GCGC	4 cut(s)	201, 1302, 1756, 1813
BstKTI	GATC	9 cut(s)	109, 346, 585, 593, 1581, 1864, 1957, 2419, 2486
BstMBI	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	3 cut(s)	145, 375, 588
BstNSI	RCATGY	1 cut(s)	1975
BstPI	GGTNACC	1 cut(s)	982
BstSCI	CCNGG	5 cut(s)	143, 373, 586, 930, 1329
BstSFI	CTRYAG	4 cut(s)	116, 1548, 1557, 2316
BstSLI	GKGCMC	1 cut(s)	2299
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	968, 1548
BstX2I	RGATCY	4 cut(s)	582, 590, 1578, 2483
BstYI	RGATCY	4 cut(s)	582, 590, 1578, 2483
Bsu36I	CCTNAGG	2 cut(s)	405, 1377
BsuRI	GGCC	6 cut(s)	1265, 1527, 1623, 1763, 1834, 1933
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	1239
BtsCI	GGATG	9 cut(s)	102, 358, 808, 1195, 1326, 1411, 1616, 2283, 2467
BtsI	GCAGTG	1 cut(s)	1653
BtsIMutI	CAGTG	4 cut(s)	42, 1232, 1437, 1653
BveI	ACCTGC	2 cut(s)	139, 529
Cac8I	GCNNGC	7 cut(s)	102, 436, 600, 1273, 1836, 2002, 2271
CaiI	CAGNNNCTG	3 cut(s)	1313, 1556, 1904
CciI	TCATGA	1 cut(s)	1518
CfoI	GCGC	4 cut(s)	201, 1302, 1756, 1813
Cfr10I	RCCGGY	1 cut(s)	1593
Cfr13I	GGNCC	3 cut(s)	239, 1150, 1932
CseI	GACGC	3 cut(s)	149, 1211, 2367
Csp6I	GTAC	5 cut(s)	152, 290, 902, 1662, 1873
CviQI	GTAC	5 cut(s)	152, 290, 902, 1662, 1873
DinI	GGCGCC	1 cut(s)	1301
DpnI	GATC	9 cut(s)	108, 345, 584, 592, 1580, 1863, 1956, 2418, 2485
DpnII	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
DrdI	GACNNNNNNGTC	1 cut(s)	1984
DseDI	GACNNNNNNGTC	1 cut(s)	1984
EciI	GGCGGA	1 cut(s)	1058
Ecl136II	GAGCTC	2 cut(s)	34, 529
Eco130I	CCWWGG	2 cut(s)	27, 798
Eco147I	AGGCCT	3 cut(s)	1623, 1763, 1834
Eco24I	GRGCYC	2 cut(s)	36, 531
Eco32I	GATATC	1 cut(s)	2410
Eco47I	GGWCC	2 cut(s)	239, 1150
Eco53kI	GAGCTC	2 cut(s)	34, 529
Eco57I	CTGAAG	8 cut(s)	201, 324, 593, 962, 1386, 1409, 1485, 1560
Eco81I	CCTNAGG	2 cut(s)	405, 1377
Eco88I	CYCGRG	3 cut(s)	631, 1122, 2478
Eco91I	GGTNACC	1 cut(s)	982
EcoICRI	GAGCTC	2 cut(s)	34, 529
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoO109I	RGGNCCY	2 cut(s)	239, 1150
EcoO65I	GGTNACC	1 cut(s)	982
EcoRI	GAATTC	4 cut(s)	352, 640, 1110, 1239
EcoRII	CCWGG	3 cut(s)	143, 373, 586
EcoRV	GATATC	1 cut(s)	2410
EcoT14I	CCWWGG	2 cut(s)	27, 798
EcoT22I	ATGCAT	1 cut(s)	2285
EcoT38I	GRGCYC	2 cut(s)	36, 531
EgeI	GGCGCC	1 cut(s)	1301
EheI	GGCGCC	1 cut(s)	1301
ErhI	CCWWGG	2 cut(s)	27, 798
FalI	AAGNNNNNCTT	2 cut(s)	988, 1020
FaqI	GGGAC	2 cut(s)	225, 1982
FauI	CCCGC	1 cut(s)	2495
FauNDI	CATATG	1 cut(s)	1144
FbaI	TGATCA	1 cut(s)	2416
FblI	GTMKAC	1 cut(s)	861
FokI	GGATG	9 cut(s)	109, 345, 815, 1202, 1313, 1398, 1623, 2270, 2474
FriOI	GRGCYC	2 cut(s)	36, 531
FspBI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
GlaI	GCGC	4 cut(s)	200, 1301, 1755, 1812
GsaI	CCCAGC	1 cut(s)	1307
GsuI	CTGGAG	2 cut(s)	20, 1778
HaeII	RGCGCY	3 cut(s)	1303, 1757, 1814
HaeIII	GGCC	6 cut(s)	1265, 1527, 1623, 1763, 1834, 1933
HapII	CCGG	3 cut(s)	932, 1330, 1594
HgaI	GACGC	3 cut(s)	149, 1211, 2367
HhaI	GCGC	4 cut(s)	201, 1302, 1756, 1813
Hin1I	GRCGYC	4 cut(s)	141, 448, 1300, 2378
Hin6I	GCGC	4 cut(s)	199, 1300, 1754, 1811
HinP1I	GCGC	4 cut(s)	199, 1300, 1754, 1811
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	183
HpaII	CCGG	3 cut(s)	932, 1330, 1594
HphI	GGTGA	4 cut(s)	599, 994, 1667, 2084
Hpy166II	GTNNAC	6 cut(s)	292, 331, 862, 1484, 1727, 2297
Hpy8I	GTNNAC	6 cut(s)	292, 331, 862, 1484, 1727, 2297
Hpy99I	CGWCG	4 cut(s)	86, 89, 453, 863
HpyCH4III	ACNGT	5 cut(s)	46, 397, 1432, 1852, 2362
HpyCH4IV	ACGT	4 cut(s)	294, 448, 858, 2206
HpySE526I	ACGT	4 cut(s)	294, 448, 858, 2206
Hsp92I	GRCGYC	4 cut(s)	141, 448, 1300, 2378
HspAI	GCGC	4 cut(s)	199, 1300, 1754, 1811
KasI	GGCGCC	1 cut(s)	1299
KflI	GGGWCCC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	2416
Kzo9I	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
LmnI	GCTCC	5 cut(s)	31, 39, 535, 1448, 2522
MaeI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
MaeII	ACGT	4 cut(s)	294, 448, 858, 2206
MaeIII	GTNAC	3 cut(s)	387, 982, 1888
MalI	GATC	9 cut(s)	108, 345, 584, 592, 1580, 1863, 1956, 2418, 2485
MboI	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
MfeI	CAATTG	1 cut(s)	2046
MflI	RGATCY	4 cut(s)	582, 590, 1578, 2483
MhlI	GDGCHC	4 cut(s)	36, 531, 621, 2299
Mly113I	GGCGCC	1 cut(s)	1300
MlyI	GAGTC	4 cut(s)	1091, 1479, 1538, 1994
Mph1103I	ATGCAT	1 cut(s)	2285
MroXI	GAANNNNTTC	2 cut(s)	186, 1000
MslI	CAYNNNNRTG	1 cut(s)	2278
MspA1I	CMGCKG	2 cut(s)	665, 1556
MspCI	CTTAAG	2 cut(s)	1154, 1708
MspI	CCGG	3 cut(s)	932, 1330, 1594
MspR9I	CCNGG	5 cut(s)	145, 375, 588, 932, 1331
MunI	CAATTG	1 cut(s)	2046
Mva1269I	GAATGC	1 cut(s)	2220
MvaI	CCWGG	3 cut(s)	145, 375, 588
MvnI	CGCG	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	1300
NciI	CCSGG	2 cut(s)	932, 1331
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
NlaIV	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
NmeAIII	GCCGAG	1 cut(s)	2021
NmuCI	GTSAC	1 cut(s)	982
NsiI	ATGCAT	1 cut(s)	2285
NspI	RCATGY	1 cut(s)	1975
PaeR7I	CTCGAG	3 cut(s)	631, 1122, 2478
PagI	TCATGA	1 cut(s)	1518
PceI	AGGCCT	3 cut(s)	1623, 1763, 1834
PcsI	WCGNNNNNNNCGW	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	2220
PdmI	GAANNNNTTC	2 cut(s)	186, 1000
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	4 cut(s)	1090, 1479, 1538, 1993
PluTI	GGCGCC	1 cut(s)	1303
PpsI	GAGTC	4 cut(s)	1090, 1479, 1538, 1993
Ppu21I	YACGTR	1 cut(s)	2207
PpuMI	RGGWCCY	2 cut(s)	239, 1150
PsiI	TTATAA	1 cut(s)	2129
Psp124BI	GAGCTC	2 cut(s)	36, 531
Psp5II	RGGWCCY	2 cut(s)	239, 1150
Psp6I	CCWGG	3 cut(s)	143, 373, 586
PspEI	GGTNACC	1 cut(s)	982
PspFI	CCCAGC	1 cut(s)	1303
PspGI	CCWGG	3 cut(s)	143, 373, 586
PspN4I	GGNNCC	5 cut(s)	240, 241, 584, 1301, 2485
PspPI	GGNCC	3 cut(s)	239, 1150, 1932
PspPPI	RGGWCCY	2 cut(s)	239, 1150
PspXI	VCTCGAGB	1 cut(s)	2478
PstI	CTGCAG	3 cut(s)	1552, 1561, 2320
PstNI	CAGNNNCTG	3 cut(s)	1313, 1556, 1904
PsuI	RGATCY	4 cut(s)	582, 590, 1578, 2483
PvuI	CGATCG	1 cut(s)	109
PvuII	CAGCTG	2 cut(s)	665, 1556
RsaI	GTAC	5 cut(s)	153, 291, 903, 1663, 1874
RsaNI	GTAC	5 cut(s)	152, 290, 902, 1662, 1873
RseI	CAYNNNNRTG	1 cut(s)	2278
SacI	GAGCTC	2 cut(s)	36, 531
SalI	GTCGAC	1 cut(s)	860
Sau3AI	GATC	9 cut(s)	106, 343, 582, 590, 1578, 1861, 1954, 2416, 2483
Sau96I	GGNCC	3 cut(s)	239, 1150, 1932
SchI	GAGTC	4 cut(s)	1091, 1479, 1538, 1994
ScrFI	CCNGG	5 cut(s)	145, 375, 588, 932, 1331
SduI	GDGCHC	4 cut(s)	36, 531, 621, 2299
SfcI	CTRYAG	4 cut(s)	116, 1548, 1557, 2316
SfoI	GGCGCC	1 cut(s)	1301
Sfr274I	CTCGAG	3 cut(s)	631, 1122, 2478
SinI	GGWCC	2 cut(s)	239, 1150
SlaI	CTCGAG	3 cut(s)	631, 1122, 2478
SmiMI	CAYNNNNRTG	1 cut(s)	2278
SmlI	CTYRAG	8 cut(s)	530, 545, 631, 773, 1122, 1154, 1708, 2478
SmoI	CTYRAG	8 cut(s)	530, 545, 631, 773, 1122, 1154, 1708, 2478
SseBI	AGGCCT	3 cut(s)	1623, 1763, 1834
SsiI	CCGC	7 cut(s)	1069, 1187, 1230, 1266, 1472, 1975, 2488
SspDI	GGCGCC	1 cut(s)	1299
SspI	AATATT	2 cut(s)	938, 2391
SspMI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
SstI	GAGCTC	2 cut(s)	36, 531
StuI	AGGCCT	3 cut(s)	1623, 1763, 1834
StyD4I	CCNGG	5 cut(s)	143, 373, 586, 930, 1329
StyI	CCWWGG	2 cut(s)	27, 798
TaaI	ACNGT	5 cut(s)	46, 397, 1432, 1852, 2362
TaiI	ACGT	4 cut(s)	297, 451, 861, 2209
TaqI	TCGA	7 cut(s)	632, 829, 861, 1123, 1701, 2276, 2479
TatI	WGTACW	2 cut(s)	289, 901
TauI	GCSGC	3 cut(s)	1232, 1268, 1475
TscAI	CASTG	4 cut(s)	49, 1239, 1437, 1653
TseFI	GTSAC	1 cut(s)	982
Tsp45I	GTSAC	1 cut(s)	982
TspGWI	ACGGA	1 cut(s)	2276
TspRI	CASTG	4 cut(s)	49, 1239, 1437, 1653
Vha464I	CTTAAG	2 cut(s)	1154, 1708
VneI	GTGCAC	1 cut(s)	2295
VpaK11BI	GGWCC	2 cut(s)	239, 1150
XagI	CCTNNNNNAGG	1 cut(s)	656
XapI	RAATTY	8 cut(s)	352, 640, 1110, 1239, 2173, 2228, 2383, 2636
XbaI	TCTAGA	1 cut(s)	704
XceI	RCATGY	1 cut(s)	1975
XhoI	CTCGAG	3 cut(s)	631, 1122, 2478
XmiI	GTMKAC	1 cut(s)	861
XmnI	GAANNNNTTC	2 cut(s)	186, 1000
XspI	CTAG	7 cut(s)	137, 705, 1173, 1697, 2060, 2118, 2543
ZraI	GACGTC	1 cut(s)	449
Zsp2I	ATGCAT	1 cut(s)	2285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.