Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

2029647 .. 2040209

Gene Structure 10563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGCAGAACTTATTGAGAGAGTTCCATAAGGGCCCCCCTAAAGTCAGAACTCAGATTAGCATTGCTGTTGCTGCTTTAGCTGTGCACGTTCCTGCTGAAGATTGGGGGGATGGTGGTATAGTGAACTGGCTTCGGGATGAGATGAATTCGCATCCAGAATATATACCTGGATTTTTAGAGTTACTAACAGTTTTGCCTGAGGAAGTATTCAACTACAAGATAGCAGCTCGCCCAGAAAGACGTCGCCAATTTGAGAAAGAGCTTACTTCTCAAATGGAGGTTGCTCTTAACATCTTGACAGCTTGTTTGAATATCAATGAGCTCAAGGAGCAGGTTCTTGAGGCATTTGCTTCTTGGCTTCGGCTGAAGCATGGGATCCCTGGATCTTTGCTTGCATCTCACCCATTGGTGCTTACAGCTCTCTCCAGCTTGAATTCTGAACTCCTTTCAGAGGCAGCTGTAAATGTTATTTCTGAGTTGATACACTATACGACATCTAGAGAATCAGGTGGTGTGCAAGTTCAAATGCCTTTAATTCAAGTCATTGTTCCCCAAGTGATGAATCTCAAGGCACAGCTTAGAGACTCTTCCAAGGATGAAGAAGATGTGAAGGCTATTGCTCGATTATTTGCTGACATGGGGGATTCATACGTTGACCTGATTGCAACTGGTTCTGATGAATCAAAGTTGATTGTACAAGCATTATTGGAAGTTGCTGCACACCCGGAATATTATATAGCTTCCATGACATTCAATTTTTGGCATAGTCTTCAGGTGACCTTGACAAGAAGGGATTCTTATATTTCGTTGGTTAATGAATCCACCATTGAATCTGAGAAAAATAGAAGACTGCATATATTCCGCCCTGCTTACGAGTCGCTTGTGTCCTTAGTTAGCTTCCGAATTCAATATCCTCGAGATTATCAAGACCTGTCATATGAGGACCTTAAGGAGTTCAAGCAGACTAGATATGCTGTTGCGGATGTCTTAATTGACGCAGCATCAGTTTTAGGAGGCGATGCCGCACTGAGAATTCTTTACATGAAACTTGATGAGGCCGCAGCCTGCTGTCAGAATGAAGAAAGTGAATGGCGCCCAGCAGAAGCTGCTTTATTTGGCATCCGGGCTATATCAAATTATGTATCAGTAGTTGAAGCTGAAGTAATGCCTAAGGTCATGGGCAGACTTCTAAAACTACCTCAACATCCCCAACTACTCCAGACAGTGTGCTTAACAATAGGAGCTTATTCAAAATGGCTTGATGCGGCATCTGGTGGACTCTCCATACTGCCTTCAGTTATAGATGTCCTCATGAGTGGCCTTGCTAAATCTGAAGATTCTGCAGCAGCTGCAGCTTTGGCATTTCGGCAGATCTGTGATGATTGCCGGTTAAAGCTCTGTGGATGTTTGGAAGGCCTTTTCCATATATATCACAGGGCAGTGAATGGTGAAGGTACTTTGAAAGTTTGTGCTGAGGATTCATTGCATCTAGTTGAAGCCTTAAGCAAGGTTATTAGTGAACTTCCCCCAGACCAAGCTAAGAGGGCGCTGGAGGCCTTGTGTTTGCCAGTCGTTAGTCCTTTACAGGAAGTTCTTAGCCAAGCGCCAGAGATGCTAAATAACAGGCCTGCTCGTGATTTCACAGTTCATATTGATCGGTTTGGGTACATCTTTAGATATGTAACTCATGCAGAAGCTGTGGCAGATGCAATCCAGAGGCTTTGGCCCATTTTCAAAGCCATCTTTGATCTTCGTGCTTGGGACATGCGGACAATGGAGTCTATTTGCCGAGCTTGCAAATACGCTGTGAGAACTTCTGGAAGGTGCATGGGAACAACAATTGGAGAAATGCTAGAGAAGATTCAAGAATTATATAAACAGCATCACCAACCATGCTTCCTTTATCTCTCTAGTGAAGTTATAAAGATATTTGGCTCAGACCCGTCGTGTGCTGATTATTTGAAAAATTTGATTGAGTCACTCTTTCAGCACACAACACGTATTCTCACGAGCATTCAAGAGTTTACTTCCCGACCAGATATAGCAGATGATTGCTTTCTGCTCGCATCGAGATGCATCCGTTATTGTGCGCACTTGTTTATTCCTTCTGCAGCATTTCCAGCATTAGTAGATTGCTCATTGATTGGCATTACAGTTCAACACAGGGAGGCGTCAAATTCGATATTGACCTTCTTATCAGATATCTTTGATCATGCAAACTCTACCGAGGGGGCAAAATACTTACCCATCAGGGATGCTGTAATTATTCCTCGAGGATCCATCATGACAAGAGTTTTGATTGCTGCATTGACAGGAGCAATTCCAAGCTCTCGCCTAGAAAATGTAACTTACACACTGCTATCACTATCTCGAACATACGGAGCACAGTCGGTGGAGTGGGCCAGGGAGAGTGTTTCATTAATTCCTTTGACAGCTGTGAGAGAGGTTGAGCGTGCAAGATTCTTGCAAGCATTGTCAGATGCTGCAGCTGGGGTTAATGTCAATGCCCTTTCAGTTCCACTCGAGGAGCTATCAGATGTTTGCCGGCGTAACCGTACAGTCATGGAGATCGTTCAAGGAGCTTTGAGGCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

865

Amino Acids

96.36

Weight (kDa)

5.6

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	12 - 157	2.8e-21	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	199 - 266	4.2e-15	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_3rd	PF24140	387 - 476	5.4e-08	Transportin-3/Importin-13 third TPR domain
TPR_TNPO3_IPO13_4th	PF24139	569 - 669	1e-18	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1922
AasI	GACNNNNNNGTC	1 cut(s)	1777
AatII	GACGTC	1 cut(s)	244
AbsI	CCTCGAGG	1 cut(s)	2271
Acc16I	TGCGCA	1 cut(s)	2091
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	1092
AciI	CCGC	6 cut(s)	862, 980, 1023, 1059, 1265, 1768
AclWI	GGATC	5 cut(s)	370, 383, 391, 2271, 2284
AcsI	RAATTY	6 cut(s)	145, 433, 903, 1032, 1966, 2176
AcuI	CTGAAG	6 cut(s)	117, 386, 755, 1179, 1278, 1353
AcyI	GRCGYC	3 cut(s)	241, 1093, 2171
AfaI	GTAC	4 cut(s)	696, 1456, 1667, 2557
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflII	CTTAAG	2 cut(s)	947, 1501
AflIII	ACRYGT	1 cut(s)	1997
AjnI	CCWGG	3 cut(s)	166, 379, 2402
Alw21I	GWGCWC	3 cut(s)	87, 324, 2386
Alw26I	GTCTC	1 cut(s)	576
Alw44I	GTGCAC	1 cut(s)	83
AlwI	GGATC	5 cut(s)	370, 383, 391, 2271, 2284
AlwNI	CAGNNNCTG	4 cut(s)	1106, 1349, 1697, 2483
Ama87I	CYCGRG	3 cut(s)	915, 2271, 2522
AoxI	GGCC	9 cut(s)	31, 1056, 1318, 1414, 1554, 1625, 1724, 2400, 2588
ApaI	GGGCCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	83
ApoI	RAATTY	6 cut(s)	145, 433, 903, 1032, 1966, 2176
ArsI	GACNNNNNNTTYG	4 cut(s)	289, 321, 2278, 2310
AseI	ATTAAT	1 cut(s)	2420
Asp700I	GAANNNNTTC	1 cut(s)	793
AspLEI	GCGC	4 cut(s)	1095, 1549, 1606, 2092
AspS9I	GGNCC	5 cut(s)	31, 32, 943, 1725, 2400
AsuC2I	CCSGG	2 cut(s)	725, 1124
AsuHPI	GGTGA	4 cut(s)	392, 787, 1460, 1877
AvaI	CYCGRG	3 cut(s)	915, 2271, 2522
AvaII	GGWCC	1 cut(s)	943
AxyI	CCTNAGG	2 cut(s)	198, 1170
BaeGI	GKGCMC	2 cut(s)	35, 87
BamHI	GGATCC	2 cut(s)	375, 2276
BanI	GGYRCC	1 cut(s)	1092
BanII	GRGCYC	2 cut(s)	35, 324
BauI	CACGAG	2 cut(s)	1632, 2008
BbsI	GAAGAC	2 cut(s)	761, 853
Bbv12I	GWGCWC	3 cut(s)	87, 324, 2386
BbvCI	CCTCAGC	1 cut(s)	1473
BccI	CCATC	4 cut(s)	104, 1748, 2255, 2288
BciT130I	CCWGG	3 cut(s)	168, 381, 2404
BclI	TGATCA	1 cut(s)	2209
BcnI	CCSGG	2 cut(s)	725, 1124
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	6 cut(s)	498, 966, 1490, 1853, 1911, 2336
BfmI	CTRYAG	4 cut(s)	1341, 1350, 2109, 2484
BfoI	RGCGCY	3 cut(s)	1096, 1550, 1607
BfrI	CTTAAG	2 cut(s)	947, 1501
BfuAI	ACCTGC	1 cut(s)	322
BglII	AGATCT	1 cut(s)	1371
Bme1390I	CCNGG	5 cut(s)	168, 381, 725, 1124, 2404
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	3 cut(s)	915, 2271, 2522
BmgT120I	GGNCC	5 cut(s)	31, 32, 943, 1725, 2400
BmiI	GGNNCC	5 cut(s)	33, 34, 377, 1094, 2278
BmrFI	CCNGG	5 cut(s)	168, 381, 725, 1124, 2404
BpiI	GAAGAC	2 cut(s)	761, 853
BpmI	CTGGAG	3 cut(s)	409, 1202, 1571
Bpu10I	CCTNAGC	1 cut(s)	1473
BpuEI	CTTGAG	3 cut(s)	308, 359, 551
BpuMI	CCSGG	2 cut(s)	725, 1124
BsaAI	YACGTR	1 cut(s)	2000
BsaHI	GRCGYC	3 cut(s)	241, 1093, 2171
BsaJI	CCNNGG	4 cut(s)	379, 591, 2226, 2403
BsaXI	ACNNNNNCTCC	2 cut(s)	1544, 1574
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse118I	RCCGGY	2 cut(s)	1386, 2544
Bse1I	ACTGG	3 cut(s)	131, 673, 1568
Bse21I	CCTNAGG	2 cut(s)	198, 1170
Bse3DI	GCAATG	2 cut(s)	60, 1481
BseBI	CCWGG	3 cut(s)	168, 381, 2404
BseDI	CCNNGG	4 cut(s)	379, 591, 2226, 2403
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	2 cut(s)	60, 1481
BseMII	CTCAG	7 cut(s)	65, 189, 465, 825, 1019, 1464, 1950
BseNI	ACTGG	3 cut(s)	131, 673, 1568
BseRI	GAGGAG	1 cut(s)	2540
BseSI	GKGCMC	2 cut(s)	35, 87
BseYI	CCCAGC	2 cut(s)	1096, 2489
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	9 cut(s)	33, 1058, 1320, 1416, 1556, 1627, 1726, 2402, 2590
BshNI	GGYRCC	1 cut(s)	1092
BsiHKAI	GWGCWC	3 cut(s)	87, 324, 2386
BsiHKCI	CYCGRG	3 cut(s)	915, 2271, 2522
BsiSI	CCGG	4 cut(s)	725, 1123, 1387, 2545
BslFI	GGGAC	1 cut(s)	1775
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	1775
BsmI	GAATGC	1 cut(s)	2013
BsnI	GGCC	9 cut(s)	33, 1058, 1320, 1416, 1556, 1627, 1726, 2402, 2590
BsoBI	CYCGRG	3 cut(s)	915, 2271, 2522
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	4 cut(s)	35, 87, 324, 2386
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
BspACI	CCGC	6 cut(s)	862, 980, 1023, 1059, 1265, 1768
BspANI	GGCC	9 cut(s)	33, 1058, 1320, 1416, 1556, 1627, 1726, 2402, 2590
BspCNI	CTCAG	7 cut(s)	64, 190, 466, 826, 1020, 1465, 1949
BspHI	TCATGA	2 cut(s)	1311, 2283
BspLI	GGNNCC	5 cut(s)	33, 34, 377, 1094, 2278
BspMAI	CTGCAG	4 cut(s)	1345, 1354, 2113, 2488
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	5 cut(s)	370, 383, 391, 2271, 2284
BspT107I	GGYRCC	1 cut(s)	1092
BspTI	CTTAAG	2 cut(s)	947, 1501
BsrDI	GCAATG	2 cut(s)	60, 1481
BsrFI	RCCGGY	2 cut(s)	1386, 2544
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	131, 673, 1568
BssAI	RCCGGY	2 cut(s)	1386, 2544
BssECI	CCNNGG	4 cut(s)	379, 591, 2226, 2403
BssMI	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
BssNI	GRCGYC	3 cut(s)	241, 1093, 2171
BssSI	CACGAG	2 cut(s)	1632, 2008
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	2 cut(s)	1632, 2008
Bst2UI	CCWGG	3 cut(s)	168, 381, 2404
Bst4CI	ACNGT	7 cut(s)	190, 1225, 1645, 2155, 2388, 2555, 2560
Bst6I	CTCTTC	1 cut(s)	592
BstACI	GRCGYC	3 cut(s)	241, 1093, 2171
BstAFI	CTTAAG	2 cut(s)	947, 1501
BstAPI	GCANNNNNTGC	2 cut(s)	1106, 1349
BstAUI	TGTACA	1 cut(s)	694
BstBAI	YACGTR	1 cut(s)	2000
BstEII	GGTNACC	1 cut(s)	775
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstH2I	RGCGCY	3 cut(s)	1096, 1550, 1607
BstHHI	GCGC	4 cut(s)	1095, 1549, 1606, 2092
BstKTI	GATC	8 cut(s)	378, 386, 1374, 1657, 1750, 2212, 2279, 2571
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
BstNI	CCWGG	3 cut(s)	168, 381, 2404
BstNSI	RCATGY	1 cut(s)	1768
BstPI	GGTNACC	1 cut(s)	775
BstSCI	CCNGG	5 cut(s)	166, 379, 723, 1122, 2402
BstSFI	CTRYAG	4 cut(s)	1341, 1350, 2109, 2484
BstSLI	GKGCMC	2 cut(s)	35, 87
BstV2I	GAAGAC	2 cut(s)	761, 853
BstX2I	RGATCY	4 cut(s)	375, 383, 1371, 2276
BstYI	RGATCY	4 cut(s)	375, 383, 1371, 2276
Bsu36I	CCTNAGG	2 cut(s)	198, 1170
BsuRI	GGCC	9 cut(s)	33, 1058, 1320, 1416, 1556, 1627, 1726, 2402, 2590
BtgZI	GCGATG	1 cut(s)	1032
BtsI	GCAGTG	2 cut(s)	1446, 2354
BtsIMutI	CAGTG	4 cut(s)	1025, 1230, 1446, 2354
BveI	ACCTGC	1 cut(s)	322
CaiI	CAGNNNCTG	4 cut(s)	1106, 1349, 1697, 2483
CciI	TCATGA	2 cut(s)	1311, 2283
CfoI	GCGC	4 cut(s)	1095, 1549, 1606, 2092
Cfr10I	RCCGGY	2 cut(s)	1386, 2544
Cfr13I	GGNCC	5 cut(s)	31, 32, 943, 1725, 2400
CseI	GACGC	2 cut(s)	1004, 2160
Csp6I	GTAC	4 cut(s)	695, 1455, 1666, 2556
CviQI	GTAC	4 cut(s)	695, 1455, 1666, 2556
DinI	GGCGCC	1 cut(s)	1094
DpnI	GATC	8 cut(s)	377, 385, 1373, 1656, 1749, 2211, 2278, 2570
DpnII	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
DrdI	GACNNNNNNGTC	1 cut(s)	1777
DseDI	GACNNNNNNGTC	1 cut(s)	1777
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
EciI	GGCGGA	1 cut(s)	851
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	591
Eco147I	AGGCCT	4 cut(s)	1416, 1556, 1627, 2590
Eco24I	GRGCYC	2 cut(s)	35, 324
Eco32I	GATATC	1 cut(s)	2203
Eco47I	GGWCC	1 cut(s)	943
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	6 cut(s)	117, 386, 755, 1179, 1278, 1353
Eco81I	CCTNAGG	2 cut(s)	198, 1170
Eco88I	CYCGRG	3 cut(s)	915, 2271, 2522
Eco91I	GGTNACC	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	3 cut(s)	31, 32, 943
EcoO65I	GGTNACC	1 cut(s)	775
EcoRI	GAATTC	4 cut(s)	145, 433, 903, 1032
EcoRII	CCWGG	3 cut(s)	166, 379, 2402
EcoRV	GATATC	1 cut(s)	2203
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	2078
EcoT38I	GRGCYC	2 cut(s)	35, 324
EgeI	GGCGCC	1 cut(s)	1094
EheI	GGCGCC	1 cut(s)	1094
ErhI	CCWWGG	1 cut(s)	591
FalI	AAGNNNNNCTT	2 cut(s)	781, 813
FaqI	GGGAC	1 cut(s)	1775
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	2209
FriOI	GRGCYC	2 cut(s)	35, 324
FspAI	RTGCGCAY	1 cut(s)	2091
FspBI	CTAG	6 cut(s)	498, 966, 1490, 1853, 1911, 2336
FspI	TGCGCA	1 cut(s)	2091
GlaI	GCGC	4 cut(s)	1094, 1548, 1605, 2091
GsaI	CCCAGC	2 cut(s)	1100, 2493
GsuI	CTGGAG	3 cut(s)	409, 1202, 1571
HaeII	RGCGCY	3 cut(s)	1096, 1550, 1607
HaeIII	GGCC	9 cut(s)	33, 1058, 1320, 1416, 1556, 1627, 1726, 2402, 2590
HapII	CCGG	4 cut(s)	725, 1123, 1387, 2545
HgaI	GACGC	2 cut(s)	1004, 2160
HhaI	GCGC	4 cut(s)	1095, 1549, 1606, 2092
Hin1I	GRCGYC	3 cut(s)	241, 1093, 2171
Hin6I	GCGC	4 cut(s)	1093, 1547, 1604, 2090
HinP1I	GCGC	4 cut(s)	1093, 1547, 1604, 2090
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HpaII	CCGG	4 cut(s)	725, 1123, 1387, 2545
HphI	GGTGA	4 cut(s)	392, 787, 1460, 1877
Hpy166II	GTNNAC	6 cut(s)	85, 124, 655, 1277, 1520, 2025
Hpy8I	GTNNAC	6 cut(s)	85, 124, 655, 1277, 1520, 2025
Hpy99I	CGWCG	2 cut(s)	246, 1948
HpyAV	CCTTC	8 cut(s)	604, 783, 1302, 1406, 1445, 1815, 2115, 2200
HpyCH4III	ACNGT	7 cut(s)	190, 1225, 1645, 2155, 2388, 2555, 2560
HpyCH4IV	ACGT	4 cut(s)	87, 241, 651, 1999
HpySE526I	ACGT	4 cut(s)	87, 241, 651, 1999
Hsp92I	GRCGYC	3 cut(s)	241, 1093, 2171
HspAI	GCGC	4 cut(s)	1093, 1547, 1604, 2090
KasI	GGCGCC	1 cut(s)	1092
KroI	GCCGGC	1 cut(s)	2544
KroNI	GCCGGC	1 cut(s)	2546
Ksp22I	TGATCA	1 cut(s)	2209
Kzo9I	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
LmnI	GCTCC	6 cut(s)	328, 1241, 2315, 2381, 2527, 2579
MaeI	CTAG	6 cut(s)	498, 966, 1490, 1853, 1911, 2336
MaeII	ACGT	4 cut(s)	87, 241, 651, 1999
MaeIII	GTNAC	6 cut(s)	180, 775, 1681, 1977, 2344, 2549
MalI	GATC	8 cut(s)	377, 385, 1373, 1656, 1749, 2211, 2278, 2570
MboI	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
MfeI	CAATTG	1 cut(s)	1839
MflI	RGATCY	4 cut(s)	375, 383, 1371, 2276
MhlI	GDGCHC	4 cut(s)	35, 87, 324, 2386
Mly113I	GGCGCC	1 cut(s)	1093
MlyI	GAGTC	5 cut(s)	578, 884, 1272, 1787, 1985
Mph1103I	ATGCAT	1 cut(s)	2078
MroNI	GCCGGC	1 cut(s)	2544
MroXI	GAANNNNTTC	1 cut(s)	793
MslI	CAYNNNNRTG	1 cut(s)	2071
MspA1I	CMGCKG	4 cut(s)	458, 1349, 2435, 2489
MspCI	CTTAAG	2 cut(s)	947, 1501
MspI	CCGG	4 cut(s)	725, 1123, 1387, 2545
MspR9I	CCNGG	5 cut(s)	168, 381, 725, 1124, 2404
MunI	CAATTG	1 cut(s)	1839
Mva1269I	GAATGC	1 cut(s)	2013
MvaI	CCWGG	3 cut(s)	168, 381, 2404
NaeI	GCCGGC	1 cut(s)	2546
NarI	GGCGCC	1 cut(s)	1093
NciI	CCSGG	2 cut(s)	725, 1124
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
NgoMIV	GCCGGC	1 cut(s)	2544
NlaIV	GGNNCC	5 cut(s)	33, 34, 377, 1094, 2278
NmeAIII	GCCGAG	1 cut(s)	1814
NmuCI	GTSAC	2 cut(s)	775, 1977
NsbI	TGCGCA	1 cut(s)	2091
NsiI	ATGCAT	1 cut(s)	2078
NspI	RCATGY	1 cut(s)	1768
PaeR7I	CTCGAG	3 cut(s)	915, 2271, 2522
PagI	TCATGA	2 cut(s)	1311, 2283
PceI	AGGCCT	4 cut(s)	1416, 1556, 1627, 2590
PctI	GAATGC	1 cut(s)	2013
PdiI	GCCGGC	1 cut(s)	2546
PdmI	GAANNNNTTC	1 cut(s)	793
PleI	GAGTC	5 cut(s)	578, 883, 1272, 1786, 1984
PluTI	GGCGCC	1 cut(s)	1096
PpsI	GAGTC	5 cut(s)	578, 883, 1272, 1786, 1984
Ppu21I	YACGTR	1 cut(s)	2000
PpuMI	RGGWCCY	1 cut(s)	943
PshBI	ATTAAT	1 cut(s)	2420
PsiI	TTATAA	1 cut(s)	1922
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	943
Psp6I	CCWGG	3 cut(s)	166, 379, 2402
PspEI	GGTNACC	1 cut(s)	775
PspFI	CCCAGC	2 cut(s)	1096, 2489
PspGI	CCWGG	3 cut(s)	166, 379, 2402
PspN4I	GGNNCC	5 cut(s)	33, 34, 377, 1094, 2278
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	5 cut(s)	31, 32, 943, 1725, 2400
PspPPI	RGGWCCY	1 cut(s)	943
PspXI	VCTCGAGB	2 cut(s)	2271, 2522
PstI	CTGCAG	4 cut(s)	1345, 1354, 2113, 2488
PstNI	CAGNNNCTG	4 cut(s)	1106, 1349, 1697, 2483
PsuI	RGATCY	4 cut(s)	375, 383, 1371, 2276
PvuII	CAGCTG	4 cut(s)	458, 1349, 2435, 2489
RsaI	GTAC	4 cut(s)	696, 1456, 1667, 2557
RsaNI	GTAC	4 cut(s)	695, 1455, 1666, 2556
RseI	CAYNNNNRTG	1 cut(s)	2071
SacI	GAGCTC	1 cut(s)	324
Sau3AI	GATC	8 cut(s)	375, 383, 1371, 1654, 1747, 2209, 2276, 2568
Sau96I	GGNCC	5 cut(s)	31, 32, 943, 1725, 2400
SchI	GAGTC	5 cut(s)	578, 884, 1272, 1787, 1985
ScrFI	CCNGG	5 cut(s)	168, 381, 725, 1124, 2404
SduI	GDGCHC	4 cut(s)	35, 87, 324, 2386
SfcI	CTRYAG	4 cut(s)	1341, 1350, 2109, 2484
SfoI	GGCGCC	1 cut(s)	1094
Sfr274I	CTCGAG	3 cut(s)	915, 2271, 2522
SinI	GGWCC	1 cut(s)	943
SlaI	CTCGAG	3 cut(s)	915, 2271, 2522
SmiMI	CAYNNNNRTG	1 cut(s)	2071
SmlI	CTYRAG	8 cut(s)	323, 338, 566, 915, 947, 1501, 2271, 2522
SmoI	CTYRAG	8 cut(s)	323, 338, 566, 915, 947, 1501, 2271, 2522
SseBI	AGGCCT	4 cut(s)	1416, 1556, 1627, 2590
SsiI	CCGC	6 cut(s)	862, 980, 1023, 1059, 1265, 1768
SspDI	GGCGCC	1 cut(s)	1092
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	6 cut(s)	498, 966, 1490, 1853, 1911, 2336
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	4 cut(s)	1416, 1556, 1627, 2590
StyD4I	CCNGG	5 cut(s)	166, 379, 723, 1122, 2402
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	7 cut(s)	190, 1225, 1645, 2155, 2388, 2555, 2560
TaiI	ACGT	4 cut(s)	90, 244, 654, 2002
TaqI	TCGA	7 cut(s)	622, 916, 2069, 2180, 2272, 2371, 2523
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	3 cut(s)	1025, 1061, 1268
TscAI	CASTG	4 cut(s)	1032, 1230, 1446, 2361
TseFI	GTSAC	2 cut(s)	775, 1977
Tsp45I	GTSAC	2 cut(s)	775, 1977
TspGWI	ACGGA	2 cut(s)	2069, 2394
TspRI	CASTG	4 cut(s)	1032, 1230, 1446, 2361
Vha464I	CTTAAG	2 cut(s)	947, 1501
VneI	GTGCAC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	943
VspI	ATTAAT	1 cut(s)	2420
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	6 cut(s)	145, 433, 903, 1032, 1966, 2176
XbaI	TCTAGA	1 cut(s)	497
XceI	RCATGY	1 cut(s)	1768
XhoI	CTCGAG	3 cut(s)	915, 2271, 2522
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	6 cut(s)	498, 966, 1490, 1853, 1911, 2336
ZraI	GACGTC	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	2078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.