Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

28093421 .. 28103290

Gene Structure 9870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1189400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2907 bp

ATGAGCTTGATTCCCTCCATCTTGTCTATCACATACAAGATAGGGCATCTGGTGTTTTTTAGTTATCTACGCAGCTTTAAATCTATACCCTTAACCTTTTTCTTAATCAATGATAAATATCTCTTTCAAGATTTTCACTTTTGGTATATGAAGGTAAAGGTTGCTGATAACTTGCTTCATGATGCAACTAGCAATCTAGAAACTTTAATATTTTGTTCACAGACCCTTAGAAGCAAGGTACAACGAGATTTTGAAGAACTACCTTCTGAAGCTTTTCACCCGTTACGTGATTCGTTAAATAACTTATTGAGAAAATTCCACAAAGGCCCCCCTAAAGTCAGAACTCAGATTAGCATTGCTGTTGCTGCTTTGGCTGTACATGTTAGCGCTGAAGATTGGGGGGATGGTGGTATTGTTAAGTGGCTTCATGAGGAGATGAATTTGCATCCAGAGTTTATACCAGGATTTTTGGAGTTACTAACAGTTTTGCCTGAGGAAGTATCCAATTACAAAATTGCAGCTCGCCCGGAAAGACGCCGTCAATTTGAAAAAGAGTTGACTTCACAAATGGAGATTGCTCTTAACATCCTGACAGCCTGTTTGAATATTAATGAGCTTAAGGAGCAGGTTCTTGAGGCATTTGCTTCTTGGCTTCGACTGAAGCATGGGATCCCTGGATCTGTGCTTGCATCCCATCCATTGGTGCTCACAGCCCTCTCAAGCTTGAATTCTGAGCTACTCTCAGAGGCCGCAGTAAATGTTATATCTGAATTGATACACTATACAGCAGCTGGAAGCTCTGGTGGTGTTTCTGTGCAGATGCCCTTAATTCAAGTGCTTGTCCCCCAAGTAATGAATCTTAAGGGACAGCTAAGAGATTCTTCGAAGGATGAGGAAGACGTGAAGGCCATTACTCGCTTATTTTCGGACATGGGTGATTCATATGTTGAACTTATTGCAACTGGCTCAGATGAATCAATGTTGATTGTACATGCGTTATTGGAAGTTGCTTCACACCCAGAGTACTATATTGCTTCCATGACATTCAACTTTTGGCACAGTCTCCAGGTGAACTTGACCAGATGGGAATCATATATTTCGTTTGTGAATGAATCTTCCATTGAAGCTGAGAGAAATAGAAGGCTGGAAGTTTTTCGTCCAGCTTATGAGTCACTTGTATCCATAGTAAGCTCTCGGATTCAATATCCTCAAGATTATCAGGACCTTTCATATGAAGATCTGAAGGAGTTTAAGCAGACTAGATATGCTGTTGCGGATGTCTTAATTGATGCAGCATCAGTTTTAGGGGGCGATGCAACACTTAGAATTCTTTACATGAAGCTTGACGAGGCTGCAGCTTGCTGTCACAATGAACAAAGTGAATGGCACCCAGCGGAAGCTGCTTTGTTCGGCATCCGGGCTATATCAACATATGTTTCAACAGTAGAAGCTGAAGTAATGCCCAAGGTTATGGATAGGCTGCTAAAACTACCTCAGCATCCTCAACTACTTCAGACAGTTTGCTTAACTATTGGAGCGTATTCAAAGTGGCTTGATGTTGCATCCAGCGGACCGTCCATACTGCCTTCGGTTCTACATATCCTCATGAGTGGCATGGGTATATCTGATTCTGCAGCAGCTGCAGCTGTAGCATTTAGGCAGATTTGTGATGATTGCCGGTTAAAGCTCTCTGGATGTTTGGATGGACTCTTCCATACATACCATGGGGCAGTGAATGGTGAAGGCAGTTTTAAGGTCTCTGCTGATGATTCACTACATCTAGTTGAAGCCTTAAGCAAGGTCATTACTGAACTTCCCCCAGATCATGCTAAGAGGGCTTTGGAGGCCTTGTGCTTGCCTGTTGTTACTCCTTTACAGGAAGTTGTCCGTCAGGGCCCAGACACGCTAAATAGCAAGCCTGCTCGTGATTTAACCGTTCACATCGATCGATTTGGATACATCTTTAGGTATGTGAAACATGCAGAAGCTGTGGCAGATGCAATTCAAAGACTTTGGCCAATTTTTAAAGCCATATTTGATATTCGTGCTTGGGATATGCAGACAATGGAGTCTCTGTGCCGAGCTTGCAAATATGCTGTGAGGACTTCTGGAAGGTACATGGAATTTACAATTGGAGCAATGCTGGAGGAGATTCAAGGTTTATATCAACAGCATCACCAACCATGCTTCCTCTATTTATCTAGCGAAATATTTGGTTCTGACCCATATTGTGCAAATTATTTGAAAAGTTTGATTGAAGCACTTTTTATGCACACCACACATCTTCTCACTAGCATTCAGGAATTTACTGCGAGACCTGATATAGCAGATGATTGTTTTCTGTTGGCATCAAGATGCATTCGCTATTGTCCTCAATTATTTATTCCATCTGCTGTATTTCCATCATTAGTAGATTGCTCGCTGATTGGGATTACAGTGCAGCATAGTTTGCGTGCATCAAAGTCAATATTAACGTTCTTATCCGATATATTTGATCTTGCAAACTCTGCCGAGGGAAAACAATACTTACCAATCAGGAATTCTGTCATTATTCCTCGAGGGTCCAGCATCACAAGAATCTTAATTGCTTCACTAACAGGAGCACTTCCAAGCTCCCGACGAGAACTGGTAACCTACACACTACTATCTTTATCTCGAGCTTATGGGCAACAGTCAGTGGTGTGGGCCAAGGAGAGTGTTTCTTTAATTCCTTTGACGGCTGTGACAGAAGTTGAACGTTCGAGATTCTTGAAGGCATTGTCAGATGCTGTGTCCGGGGCTGACGATAATGCTCTATCTGTTCCAATTGAGGACCTATCGGATGTTTGCCGCCGTAATAGAACAGTTATGGAGATTGTTCAACAATCTTTGAGGCCACTTGAGTTGAGCATAGCACCTGTATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

969

Amino Acids

108.26

Weight (kDa)

5.71

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	110 - 255	4.6e-20	Exportin 1-like protein
TPR_TNPO3_IPO13_2nd	PF24138	297 - 361	8e-15	Transportin-3/Importin-13 second TPR domain
TPR_TNPO3_IPO13_3rd	PF24140	485 - 572	9.8e-09	Transportin-3/Importin-13 third TPR domain
TPR_TNPO3_IPO13_4th	PF24139	666 - 762	2.4e-14	Transportin-3/Importin-13 fourth TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2068
AbsI	CCTCGAGG	1 cut(s)	2556
Acc36I	ACCTGC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	1386
AccB7I	CCANNNNNTGG	1 cut(s)	700
AciI	CCGC	5 cut(s)	750, 1274, 1394, 1569, 2830
AclI	AACGTT	2 cut(s)	2474, 2737
AclWI	GGATC	3 cut(s)	664, 677, 685
AcoI	YGGCCR	1 cut(s)	2015
AcsI	RAATTY	7 cut(s)	314, 439, 727, 1326, 2123, 2303, 2539
AcuI	CTGAAG	6 cut(s)	288, 411, 680, 1262, 1473, 1496
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	5 cut(s)	240, 378, 990, 1025, 2117
AfeI	AGCGCT	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	700
AflII	CTTAAG	3 cut(s)	617, 860, 1792
AflIII	ACRYGT	1 cut(s)	379
AjiI	CACGTC	1 cut(s)	901
AjnI	CCWGG	3 cut(s)	460, 673, 1065
AjuI	GAANNNNNNNTTGG	4 cut(s)	2115, 2147, 2524, 2556
Alw21I	GWGCWC	2 cut(s)	708, 2605
Alw26I	GTCTC	4 cut(s)	1067, 1762, 2076, 2308
AlwI	GGATC	3 cut(s)	664, 677, 685
AlwNI	CAGNNNCTG	4 cut(s)	791, 1640, 1988, 2768
Ama87I	CYCGRG	2 cut(s)	2556, 2655
Aor51HI	AGCGCT	1 cut(s)	388
AoxI	GGCC	8 cut(s)	325, 747, 906, 1845, 1894, 2015, 2685, 2873
ApaI	GGGCCC	1 cut(s)	1898
ApoI	RAATTY	7 cut(s)	314, 439, 727, 1326, 2123, 2303, 2539
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AseI	ATTAAT	1 cut(s)	609
Asp700I	GAANNNNTTC	2 cut(s)	273, 1152
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	8 cut(s)	326, 1222, 1571, 1894, 1895, 2562, 2685, 2812
AsuC2I	CCSGG	3 cut(s)	527, 1418, 2776
AsuHPI	GGTGA	5 cut(s)	269, 947, 1081, 1751, 2168
AsuII	TTCGAA	1 cut(s)	884
AvaI	CYCGRG	2 cut(s)	2556, 2655
AvaII	GGWCC	4 cut(s)	1222, 1571, 2562, 2812
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	1898
BalI	TGGCCA	1 cut(s)	2017
BamHI	GGATCC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	1386
BanII	GRGCYC	1 cut(s)	1898
BauI	CACGAG	1 cut(s)	1923
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	2 cut(s)	708, 2605
BbvCI	CCTCAGC	1 cut(s)	1494
BccI	CCATC	7 cut(s)	26, 398, 702, 1077, 1697, 2395, 2410
BceAI	ACGGC	3 cut(s)	522, 2733, 2817
BcgI	CGANNNNNNTGC	1 cut(s)	2883
BciT130I	CCWGG	3 cut(s)	462, 675, 1067
BciVI	GTATCC	3 cut(s)	511, 1189, 1949
BcnI	CCSGG	3 cut(s)	527, 1418, 2776
BcoDI	GTCTC	4 cut(s)	1067, 1762, 2076, 2308
BfaI	CTAG	6 cut(s)	189, 197, 1260, 1781, 2202, 2292
BfmI	CTRYAG	4 cut(s)	1353, 1632, 1641, 1647
BfoI	RGCGCY	1 cut(s)	390
BfrI	CTTAAG	3 cut(s)	617, 860, 1792
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	3 cut(s)	511, 1189, 1949
BglII	AGATCT	1 cut(s)	1237
BmcAI	AGTACT	1 cut(s)	1025
Bme1390I	CCNGG	6 cut(s)	462, 527, 675, 1067, 1418, 2776
Bme18I	GGWCC	4 cut(s)	1222, 1571, 2562, 2812
BmeT110I	CYCGRG	2 cut(s)	2556, 2655
BmgBI	CACGTC	1 cut(s)	901
BmgT120I	GGNCC	8 cut(s)	326, 1222, 1571, 1894, 1895, 2562, 2685, 2812
BmiI	GGNNCC	5 cut(s)	328, 671, 1388, 1896, 2563
BmrFI	CCNGG	6 cut(s)	462, 527, 675, 1067, 1418, 2776
BpiI	GAAGAC	1 cut(s)	903
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpmI	CTGGAG	2 cut(s)	1049, 2165
Bpu10I	CCTNAGC	1 cut(s)	1494
Bpu14I	TTCGAA	1 cut(s)	884
BpuEI	CTTGAG	4 cut(s)	653, 703, 1194, 2900
BpuMI	CCSGG	3 cut(s)	527, 1418, 2776
Bsa29I	ATCGAT	2 cut(s)	1944, 1948
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	2 cut(s)	117, 1087
BsaHI	GRCGYC	1 cut(s)	535
BsaI	GGTCTC	2 cut(s)	1762, 2308
BsaJI	CCNNGG	6 cut(s)	673, 1464, 1723, 2511, 2688, 2775
BsaXI	ACNNNNNCTCC	4 cut(s)	1835, 1865, 2060, 2090
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse118I	RCCGGY	1 cut(s)	1677
Bse1I	ACTGG	2 cut(s)	967, 2631
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	2 cut(s)	354, 2145
Bse8I	GATNNNNATC	2 cut(s)	117, 1087
BseBI	CCWGG	3 cut(s)	462, 675, 1067
BseCI	ATCGAT	2 cut(s)	1944, 1948
BseDI	CCNNGG	6 cut(s)	673, 1464, 1723, 2511, 2688, 2775
BseJI	GATNNNNATC	2 cut(s)	117, 1087
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	2 cut(s)	354, 2145
BseMII	CTCAG	7 cut(s)	359, 483, 723, 756, 981, 1119, 1508
BseNI	ACTGG	2 cut(s)	967, 2631
BseRI	GAGGAG	2 cut(s)	446, 2162
BseSI	GKGCMC	1 cut(s)	1898
BseYI	CCCAGC	1 cut(s)	1390
BsgI	GTGCAG	2 cut(s)	836, 2459
Bsh1285I	CGRYCG	1 cut(s)	1948
BshFI	GGCC	8 cut(s)	327, 749, 908, 1847, 1896, 2017, 2687, 2875
BshNI	GGYRCC	1 cut(s)	1386
BshVI	ATCGAT	2 cut(s)	1944, 1948
BsiEI	CGRYCG	1 cut(s)	1948
BsiHKAI	GWGCWC	2 cut(s)	708, 2605
BsiHKCI	CYCGRG	2 cut(s)	2556, 2655
BsiSI	CCGG	4 cut(s)	527, 1417, 1678, 2775
BslFI	GGGAC	2 cut(s)	827, 879
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	4 cut(s)	1067, 1762, 2076, 2308
BsmFI	GGGAC	2 cut(s)	827, 879
BsmI	GAATGC	2 cut(s)	2295, 2358
BsnI	GGCC	8 cut(s)	327, 749, 908, 1847, 1896, 2017, 2687, 2875
Bso31I	GGTCTC	2 cut(s)	1762, 2308
BsoBI	CYCGRG	2 cut(s)	2556, 2655
Bsp119I	TTCGAA	1 cut(s)	884
Bsp120I	GGGCCC	1 cut(s)	1894
Bsp1286I	GDGCHC	3 cut(s)	708, 1898, 2605
Bsp1407I	TGTACA	2 cut(s)	376, 988
Bsp143I	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
Bsp19I	CCATGG	1 cut(s)	1723
BspACI	CCGC	5 cut(s)	750, 1274, 1394, 1569, 2830
BspANI	GGCC	8 cut(s)	327, 749, 908, 1847, 1896, 2017, 2687, 2875
BspCNI	CTCAG	7 cut(s)	358, 484, 724, 755, 980, 1120, 1507
BspDI	ATCGAT	2 cut(s)	1944, 1948
BspHI	TCATGA	3 cut(s)	178, 427, 1605
BspLI	GGNNCC	5 cut(s)	328, 671, 1388, 1896, 2563
BspMAI	CTGCAG	3 cut(s)	1357, 1636, 1645
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	3 cut(s)	664, 677, 685
BspT104I	TTCGAA	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	1386
BspTI	CTTAAG	3 cut(s)	617, 860, 1792
BspTNI	GGTCTC	2 cut(s)	1762, 2308
BsrDI	GCAATG	2 cut(s)	354, 2145
BsrFI	RCCGGY	1 cut(s)	1677
BsrGI	TGTACA	2 cut(s)	376, 988
BsrI	ACTGG	2 cut(s)	967, 2631
BssAI	RCCGGY	1 cut(s)	1677
BssECI	CCNNGG	6 cut(s)	673, 1464, 1723, 2511, 2688, 2775
BssMI	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
BssNI	GRCGYC	1 cut(s)	535
BssSI	CACGAG	1 cut(s)	1923
BssT1I	CCWWGG	3 cut(s)	1464, 1723, 2688
Bst2BI	CACGAG	1 cut(s)	1923
Bst2UI	CCWGG	3 cut(s)	462, 675, 1067
Bst4CI	ACNGT	9 cut(s)	484, 1061, 1444, 1519, 1575, 1936, 2437, 2673, 2845
Bst6I	CTCTTC	1 cut(s)	1715
BstACI	GRCGYC	1 cut(s)	535
BstAFI	CTTAAG	3 cut(s)	617, 860, 1792
BstAPI	GCANNNNNTGC	3 cut(s)	1640, 2449, 2507
BstAUI	TGTACA	2 cut(s)	376, 988
BstBAI	YACGTR	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	9 cut(s)	523, 687, 1360, 1856, 1916, 1920, 2086, 2420, 2454
BstDSI	CCRYGG	1 cut(s)	1723
BstEII	GGTNACC	1 cut(s)	2629
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	6 cut(s)	672, 680, 1240, 1825, 1948, 2497
BstMAI	GTCTC	4 cut(s)	1067, 1762, 2076, 2308
BstMBI	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
BstMCI	CGRYCG	1 cut(s)	1948
BstNI	CCWGG	3 cut(s)	462, 675, 1067
BstNSI	RCATGY	3 cut(s)	383, 995, 1982
BstPI	GGTNACC	1 cut(s)	2629
BstSCI	CCNGG	6 cut(s)	460, 525, 673, 1065, 1416, 2774
BstSFI	CTRYAG	4 cut(s)	1353, 1632, 1641, 1647
BstSLI	GKGCMC	1 cut(s)	1898
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	3 cut(s)	669, 677, 1237
BstXI	CCANNNNNNTGG	1 cut(s)	1471
BstYI	RGATCY	3 cut(s)	669, 677, 1237
Bsu15I	ATCGAT	2 cut(s)	1944, 1948
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	3 cut(s)	511, 1189, 1949
BsuRI	GGCC	8 cut(s)	327, 749, 908, 1847, 1896, 2017, 2687, 2875
BsuTUI	ATCGAT	2 cut(s)	1944, 1948
BtgI	CCRYGG	1 cut(s)	1723
BtgZI	GCGATG	1 cut(s)	1326
BtrI	CACGTC	1 cut(s)	901
BtsI	GCAGTG	1 cut(s)	1737
BtsIMutI	CAGTG	3 cut(s)	1737, 2442, 2682
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	9 cut(s)	523, 687, 1360, 1856, 1916, 1920, 2086, 2420, 2454
CaiI	CAGNNNCTG	4 cut(s)	791, 1640, 1988, 2768
CciI	TCATGA	3 cut(s)	178, 427, 1605
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	1677
Cfr13I	GGNCC	8 cut(s)	326, 1222, 1571, 1894, 1895, 2562, 2685, 2812
ClaI	ATCGAT	2 cut(s)	1944, 1948
CpoI	CGGWCCG	1 cut(s)	1571
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	5 cut(s)	239, 377, 989, 1024, 2116
CspCI	CAANNNNNGTGG	2 cut(s)	2865, 2900
CspI	CGGWCCG	1 cut(s)	1571
CviQI	GTAC	5 cut(s)	239, 377, 989, 1024, 2116
DpnI	GATC	6 cut(s)	671, 679, 1239, 1824, 1947, 2496
DpnII	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
DraI	TTTAAA	2 cut(s)	79, 2026
DrdI	GACNNNNNNGTC	1 cut(s)	2068
DseDI	GACNNNNNNGTC	1 cut(s)	2068
EaeI	YGGCCR	1 cut(s)	2015
Eam1104I	CTCTTC	1 cut(s)	1715
EarI	CTCTTC	1 cut(s)	1715
Eco130I	CCWWGG	3 cut(s)	1464, 1723, 2688
Eco147I	AGGCCT	1 cut(s)	1847
Eco24I	GRGCYC	1 cut(s)	1898
Eco31I	GGTCTC	2 cut(s)	1762, 2308
Eco47I	GGWCC	4 cut(s)	1222, 1571, 2562, 2812
Eco47III	AGCGCT	1 cut(s)	388
Eco57I	CTGAAG	6 cut(s)	288, 411, 680, 1262, 1473, 1496
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	2556, 2655
Eco91I	GGTNACC	1 cut(s)	2629
EcoO109I	RGGNCCY	4 cut(s)	326, 1222, 1894, 2812
EcoO65I	GGTNACC	1 cut(s)	2629
EcoRI	GAATTC	3 cut(s)	727, 1326, 2539
EcoRII	CCWGG	3 cut(s)	460, 673, 1065
EcoT14I	CCWWGG	3 cut(s)	1464, 1723, 2688
EcoT22I	ATGCAT	1 cut(s)	2360
EcoT38I	GRGCYC	1 cut(s)	1898
ErhI	CCWWGG	3 cut(s)	1464, 1723, 2688
FalI	AAGNNNNNCTT	2 cut(s)	865, 897
FaqI	GGGAC	2 cut(s)	827, 879
FauNDI	CATATG	3 cut(s)	943, 1231, 1432
FriOI	GRGCYC	1 cut(s)	1898
FspBI	CTAG	6 cut(s)	189, 197, 1260, 1781, 2202, 2292
GlaI	GCGC	1 cut(s)	388
GsaI	CCCAGC	1 cut(s)	1394
GsuI	CTGGAG	2 cut(s)	1049, 2165
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	8 cut(s)	327, 749, 908, 1847, 1896, 2017, 2687, 2875
HapII	CCGG	4 cut(s)	527, 1417, 1678, 2775
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	535
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HindIII	AAGCTT	3 cut(s)	270, 721, 1340
HpaII	CCGG	4 cut(s)	527, 1417, 1678, 2775
HphI	GGTGA	5 cut(s)	269, 947, 1081, 1751, 2168
Hpy166II	GTNNAC	4 cut(s)	218, 558, 1072, 1939
Hpy8I	GTNNAC	4 cut(s)	218, 558, 1072, 1939
Hpy99I	CGWCG	1 cut(s)	2622
HpyCH4III	ACNGT	9 cut(s)	484, 1061, 1444, 1519, 1575, 1936, 2437, 2673, 2845
HpyCH4IV	ACGT	4 cut(s)	286, 900, 2474, 2737
HpySE526I	ACGT	4 cut(s)	286, 900, 2474, 2737
Hsp92I	GRCGYC	1 cut(s)	535
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
LmnI	GCTCC	5 cut(s)	622, 1535, 2135, 2600, 2618
MaeI	CTAG	6 cut(s)	189, 197, 1260, 1781, 2202, 2292
MaeII	ACGT	4 cut(s)	286, 900, 2474, 2737
MaeIII	GTNAC	7 cut(s)	282, 474, 1170, 1364, 1864, 2629, 2722
MalI	GATC	6 cut(s)	671, 679, 1239, 1824, 1947, 2496
MboI	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
MboII	GAAGA	8 cut(s)	266, 404, 873, 908, 1107, 1247, 1702, 2276
MfeI	CAATTG	2 cut(s)	2130, 2805
MflI	RGATCY	3 cut(s)	669, 677, 1237
MhlI	GDGCHC	3 cut(s)	708, 1898, 2605
MlsI	TGGCCA	1 cut(s)	2017
MluNI	TGGCCA	1 cut(s)	2017
MlyI	GAGTC	3 cut(s)	1178, 1701, 2078
Mox20I	TGGCCA	1 cut(s)	2017
Mph1103I	ATGCAT	1 cut(s)	2360
MroXI	GAANNNNTTC	2 cut(s)	273, 1152
MscI	TGGCCA	1 cut(s)	2017
MslI	CAYNNNNRTG	1 cut(s)	2353
Msp20I	TGGCCA	1 cut(s)	2017
MspA1I	CMGCKG	5 cut(s)	791, 1394, 1569, 1640, 1646
MspCI	CTTAAG	3 cut(s)	617, 860, 1792
MspI	CCGG	4 cut(s)	527, 1417, 1678, 2775
MspR9I	CCNGG	6 cut(s)	462, 527, 675, 1067, 1418, 2776
MunI	CAATTG	2 cut(s)	2130, 2805
Mva1269I	GAATGC	2 cut(s)	2295, 2358
MvaI	CCWGG	3 cut(s)	462, 675, 1067
NciI	CCSGG	3 cut(s)	527, 1418, 2776
NcoI	CCATGG	1 cut(s)	1723
NdeI	CATATG	3 cut(s)	943, 1231, 1432
NdeII	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
NlaIV	GGNNCC	5 cut(s)	328, 671, 1388, 1896, 2563
NmeAIII	GCCGAG	2 cut(s)	2105, 2536
NmuCI	GTSAC	3 cut(s)	1170, 1364, 2722
NsiI	ATGCAT	1 cut(s)	2360
NspI	RCATGY	3 cut(s)	383, 995, 1982
NspV	TTCGAA	1 cut(s)	884
PaeR7I	CTCGAG	2 cut(s)	2556, 2655
PagI	TCATGA	3 cut(s)	178, 427, 1605
PceI	AGGCCT	1 cut(s)	1847
PciI	ACATGT	1 cut(s)	379
PctI	GAATGC	2 cut(s)	2295, 2358
PdmI	GAANNNNTTC	2 cut(s)	273, 1152
PflFI	GACNNNGTC	1 cut(s)	537
PflMI	CCANNNNNTGG	1 cut(s)	700
Ple19I	CGATCG	1 cut(s)	1948
PleI	GAGTC	3 cut(s)	1177, 1701, 2077
PpsI	GAGTC	3 cut(s)	1177, 1701, 2077
Ppu21I	YACGTR	1 cut(s)	287
PpuMI	RGGWCCY	2 cut(s)	1222, 2812
PscI	ACATGT	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	609
Psp1406I	AACGTT	2 cut(s)	2474, 2737
Psp5II	RGGWCCY	2 cut(s)	1222, 2812
Psp6I	CCWGG	3 cut(s)	460, 673, 1065
PspEI	GGTNACC	1 cut(s)	2629
PspFI	CCCAGC	1 cut(s)	1390
PspGI	CCWGG	3 cut(s)	460, 673, 1065
PspN4I	GGNNCC	5 cut(s)	328, 671, 1388, 1896, 2563
PspOMI	GGGCCC	1 cut(s)	1894
PspPI	GGNCC	8 cut(s)	326, 1222, 1571, 1894, 1895, 2562, 2685, 2812
PspPPI	RGGWCCY	2 cut(s)	1222, 2812
PspXI	VCTCGAGB	1 cut(s)	2556
PstI	CTGCAG	3 cut(s)	1357, 1636, 1645
PstNI	CAGNNNCTG	4 cut(s)	791, 1640, 1988, 2768
PsuI	RGATCY	3 cut(s)	669, 677, 1237
PsyI	GACNNNGTC	1 cut(s)	537
PvuI	CGATCG	1 cut(s)	1948
PvuII	CAGCTG	3 cut(s)	791, 1640, 1646
RsaI	GTAC	5 cut(s)	240, 378, 990, 1025, 2117
RsaNI	GTAC	5 cut(s)	239, 377, 989, 1024, 2116
RseI	CAYNNNNRTG	1 cut(s)	2353
Rsr2I	CGGWCCG	1 cut(s)	1571
RsrII	CGGWCCG	1 cut(s)	1571
Sau3AI	GATC	6 cut(s)	669, 677, 1237, 1822, 1945, 2494
Sau96I	GGNCC	8 cut(s)	326, 1222, 1571, 1894, 1895, 2562, 2685, 2812
ScaI	AGTACT	1 cut(s)	1025
SchI	GAGTC	3 cut(s)	1178, 1701, 2078
ScrFI	CCNGG	6 cut(s)	462, 527, 675, 1067, 1418, 2776
SduI	GDGCHC	3 cut(s)	708, 1898, 2605
SfcI	CTRYAG	4 cut(s)	1353, 1632, 1641, 1647
Sfr274I	CTCGAG	2 cut(s)	2556, 2655
SfuI	TTCGAA	1 cut(s)	884
SinI	GGWCC	4 cut(s)	1222, 1571, 2562, 2812
SlaI	CTCGAG	2 cut(s)	2556, 2655
SmiMI	CAYNNNNRTG	1 cut(s)	2353
SmlI	CTYRAG	9 cut(s)	617, 632, 718, 860, 1209, 1792, 2556, 2655, 2879
SmoI	CTYRAG	9 cut(s)	617, 632, 718, 860, 1209, 1792, 2556, 2655, 2879
SseBI	AGGCCT	1 cut(s)	1847
SsiI	CCGC	5 cut(s)	750, 1274, 1394, 1569, 2830
SspI	AATATT	4 cut(s)	210, 607, 2211, 2469
SspMI	CTAG	6 cut(s)	189, 197, 1260, 1781, 2202, 2292
StuI	AGGCCT	1 cut(s)	1847
StyD4I	CCNGG	6 cut(s)	460, 525, 673, 1065, 1416, 2774
StyI	CCWWGG	3 cut(s)	1464, 1723, 2688
TaaI	ACNGT	9 cut(s)	484, 1061, 1444, 1519, 1575, 1936, 2437, 2673, 2845
TaiI	ACGT	4 cut(s)	289, 903, 2477, 2740
TaqI	TCGA	7 cut(s)	655, 884, 1944, 1948, 2557, 2656, 2741
TatI	WGTACW	3 cut(s)	376, 988, 1023
TauI	GCSGC	2 cut(s)	752, 2832
TscAI	CASTG	3 cut(s)	1737, 2442, 2682
TseFI	GTSAC	3 cut(s)	1170, 1364, 2722
Tsp45I	GTSAC	3 cut(s)	1170, 1364, 2722
TspGWI	ACGGA	1 cut(s)	1877
TspRI	CASTG	3 cut(s)	1737, 2442, 2682
Tth111I	GACNNNGTC	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	700
Vha464I	CTTAAG	3 cut(s)	617, 860, 1792
VpaK11BI	GGWCC	4 cut(s)	1222, 1571, 2562, 2812
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	7 cut(s)	314, 439, 727, 1326, 2123, 2303, 2539
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	3 cut(s)	383, 995, 1982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1721
XhoI	CTCGAG	2 cut(s)	2556, 2655
XmnI	GAANNNNTTC	2 cut(s)	273, 1152
XspI	CTAG	6 cut(s)	189, 197, 1260, 1781, 2202, 2292
ZrmI	AGTACT	1 cut(s)	1025
Zsp2I	ATGCAT	1 cut(s)	2360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.