Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8039046.1

Orthogroup ID

OG0006614

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 430

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8039046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 203 bp

ctggaggccttgtgtttgccagtcgttagtcctttacaggaagttcttagccaagcgccagagatgctaaataacaggcctgctcgtgatttcacagttcatattgatcggtttgggtacatctttagatatgtaacccatgcagaagctgtggcagatgcaatccagaggctttggcccattttcaaagccatctttgatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0010468 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019219 GO:0019222 GO:0031090 GO:0031323 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

68

Amino Acids

7.83

Weight (kDa)

5.48

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62600
fragaria_vesca	FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030 FvH4_5g16030
malus_domestica	MD06G1183500.v1.1 MD14G1189400.v1.1
prunus_persica	Prupe.5G182200_v2.0.a1 Prupe.6G220700_v2.0.a1
pyrus_communis	pycom06g16250 pycom14g15710
rosa_chinensis	RchiOBHm_Chr7g0180041
rosa_laevigata	RLG00000005300
rosa_multiflora	Rmu_co8039046.1_g000001 Rmu_ssc0000119.1_g000007 Rmu_ssc0000119.1_g000020 Rmu_ssc0000119.1_g000024
rosa_roxburghii	Rroxscaffold_3G00273180
rosa_rugosa	Rorug06G0430100
rosa_samantha	Rh7AG030300 Rh7BG030200 Rh7CG032000 Rh7DG031000
rosa_wichuraiana	Rw7G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	6, 77, 176
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	84
BccI	CCATC	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	177
BmsI	GCATC	2 cut(s)	54, 148
BpmI	CTGGAG	1 cut(s)	23
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	20
BshFI	GGCC	3 cut(s)	8, 79, 178
BsnI	GGCC	3 cut(s)	8, 79, 178
Bsp143I	GATC	2 cut(s)	106, 199
BspANI	GGCC	3 cut(s)	8, 79, 178
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	106, 199
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	109, 202
BstMBI	GATC	2 cut(s)	106, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	8, 79, 178
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	7 cut(s)	8, 51, 79, 149, 172, 178, 191
CviKI_1	RGCY	7 cut(s)	8, 51, 79, 149, 172, 178, 191
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	108, 201
DpnII	GATC	2 cut(s)	106, 199
Eco147I	AGGCCT	2 cut(s)	8, 79
FaeI	CATG	1 cut(s)	143
FaiI	YATR	3 cut(s)	102, 132, 141
FatI	CATG	1 cut(s)	139
GlaI	GCGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	23
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	8, 79, 178
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	86, 166
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	143, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	106, 199
LpnPI	CCDG	6 cut(s)	23, 33, 61, 72, 93, 179
LweI	GCATC	2 cut(s)	54, 148
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	108, 201
MboI	GATC	2 cut(s)	106, 199
MnlI	CCTC	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	106, 199
NlaIII	CATG	1 cut(s)	143
PceI	AGGCCT	2 cut(s)	8, 79
PspPI	GGNCC	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	106, 199
Sau96I	GGNCC	1 cut(s)	177
SetI	ASST	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	54, 148
SseBI	AGGCCT	2 cut(s)	8, 79
StuI	AGGCCT	2 cut(s)	8, 79
TaaI	ACNGT	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.