Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007980

Physical Location & Seq

Genomic Coordinates Forward (+)

2382555 .. 2387137

Gene Structure 4583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1028800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCGAAACAGCAGATACCTTCATTGCGAAGAGAAGGATATGAATTCATGATGGGACCCCCCAAAGTTATTAACAAAAGGGTGAATGACAAATTGCTGGAACCATATGAGCTTCTTGTGGCCTTCTTCAAATATAAAATTCCAAATCGTGGCCTTCTTGGTTTGCGAAATGCAATTTTAACAGCTTCTTGTGGCACTGCAATTCTCAACACAATATTTGATAGCTGTGGACCCGGGATCAGGGTTCACTGTACTTCTTATGCCATTTCTAGCTCAGAGGAGAGGGGGCAGTTGTTTATTGGTCCCAGCGTGAAAGTTTATAAAGGTCAGATAGTTGGCATCCGTCAGCGGCCTGGGGACTTGTCCCTTAATGTGTGTATAAGAAGAAGGCTGCAACAAATATCCGTTCCAACAAAGAACAAACAGCCCATGATAAAATGTCCCAAGTCTATTAGGGATTATAGACTTGGAAGATTTAGTGTGATTCTTGACACCCCATTGGACGACAGCCTGGATGACTGCATTGAGTATATTCAAGAGGATGAATTGGTGGAGGTCACTCCTGCAAGTATCCGAATGTGCAAGAACCCAAAGCAAAGAAATCAAACAGGCAGTCAGTTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

209

Amino Acids

23.51

Weight (kDa)

9.46

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BipA_C	PF21018	84 - 150	4.4e-14	TypA/BipA C-terminal domain
BipA_C	PF21018	161 - 197	2.9e-09	TypA/BipA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13650 AT5G13650
fragaria_vesca	FvH4_6g23530 FvH4_6g23530 FvH4_6g23530 FvH4_6g23530
malus_domestica	MD07G1028800.v1.1 MD12G1072500.v1.1 MD14G1069900.v1.1
prunus_persica	Prupe.7G064400_v2.0.a1
pyrus_communis	pycom12g06100 pycom12g06110 pycom14g05790
rosa_chinensis	RchiOBHm_Chr3g0481531
rosa_laevigata	RLG00000023388
rosa_multiflora	Rmu_sc0010846.1_g000003 Rmu_sc0040423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400150 Rroxscaffold_6G00400350
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243700 Rh3BG278800 Rh3DG270600
rosa_wichuraiana	Rw3G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	149
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	44, 138
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	149, 240
AgsI	TTSAA	2 cut(s)	130, 536
AjnI	CCWGG	2 cut(s)	352, 510
AluBI	AGCT	4 cut(s)	112, 185, 225, 273
AluI	AGCT	4 cut(s)	112, 185, 225, 273
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	120, 151, 350
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	44, 138
ArsI	GACNNNNNNTTYG	1 cut(s)	598
AspS9I	GGNCC	3 cut(s)	56, 230, 302
AsuC2I	CCSGG	2 cut(s)	234, 235
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	56, 230, 302
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	354, 512
BciVI	GTATCC	1 cut(s)	581
BcnI	CCSGG	2 cut(s)	234, 235
BfaI	CTAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	2 cut(s)	350, 392
BlsI	GCNGC	2 cut(s)	351, 393
Bme1390I	CCNGG	4 cut(s)	234, 235, 354, 512
Bme18I	GGWCC	3 cut(s)	56, 230, 302
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	56, 230, 302
BmiI	GGNNCC	5 cut(s)	57, 58, 102, 232, 304
BmrFI	CCNGG	4 cut(s)	234, 235, 354, 512
BmsI	GCATC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	234, 235
BsaJI	CCNNGG	2 cut(s)	233, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 240
Bse3DI	GCAATG	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	354, 512
BseDI	CCNNGG	2 cut(s)	233, 353
BseGI	GGATG	3 cut(s)	339, 520, 547
BseLI	CCNNNNNNNGG	2 cut(s)	149, 240
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	378
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	3 cut(s)	122, 153, 352
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	5 cut(s)	69, 288, 349, 371, 426
BslI	CCNNNNNNNGG	2 cut(s)	149, 240
BsmFI	GGGAC	5 cut(s)	69, 288, 349, 371, 426
BsnI	GGCC	3 cut(s)	122, 153, 352
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	3 cut(s)	122, 153, 352
BspCNI	CTCAG	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	5 cut(s)	57, 58, 102, 232, 304
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	233, 353
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	354, 512
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	339, 520, 547
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	354, 512
BstSCI	CCNGG	4 cut(s)	232, 233, 352, 510
BstV1I	GCAGC	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	122, 153, 352
BtsCI	GGATG	3 cut(s)	339, 520, 547
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 247
CciI	TCATGA	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	56, 230, 302
Cfr9I	CCCGGG	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	49, 430
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	56, 230, 302
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	352, 510
FaeI	CATG	2 cut(s)	52, 433
FaqI	GGGAC	5 cut(s)	69, 288, 349, 371, 426
FatI	CATG	2 cut(s)	48, 429
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	350, 392
FokI	GGATG	3 cut(s)	326, 527, 554
Fsp4HI	GCNGC	2 cut(s)	350, 392
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	350, 392
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	122, 153, 352
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	2 cut(s)	52, 433
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	230, 247
Hpy188I	TCNGA	3 cut(s)	277, 330, 575
Hpy188III	TCNNGA	3 cut(s)	49, 488, 536
Hpy8I	GTNNAC	2 cut(s)	230, 247
HpyAV	CCTTC	5 cut(s)	29, 30, 133, 164, 381
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	6 cut(s)	173, 200, 394, 522, 566, 582
HpyF3I	CTNAG	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	52, 433
KflI	GGGWCCC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	237
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	42, 118, 396, 483
MluCI	AATT	6 cut(s)	44, 92, 138, 174, 201, 545
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	4 cut(s)	271, 276, 532, 547
MseI	TTAA	3 cut(s)	72, 179, 369
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	4 cut(s)	234, 235, 354, 512
MvaI	CCWGG	2 cut(s)	354, 512
NciI	CCSGG	2 cut(s)	234, 235
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	52, 433
NlaIV	GGNNCC	5 cut(s)	57, 58, 102, 232, 304
NmuCI	GTSAC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	351, 393
PpuMI	RGGWCCY	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	352, 510
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	352, 510
PspN4I	GGNNCC	5 cut(s)	57, 58, 102, 232, 304
PspPI	GGNCC	3 cut(s)	56, 230, 302
PspPPI	RGGWCCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	72, 179, 369
SatI	GCNGC	2 cut(s)	350, 392
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	3 cut(s)	56, 230, 302
ScrFI	CCNGG	4 cut(s)	234, 235, 354, 512
SetI	ASST	7 cut(s)	22, 114, 187, 227, 275, 328, 558
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	3 cut(s)	56, 230, 302
SmaI	CCCGGG	1 cut(s)	235
Sse9I	AATT	6 cut(s)	44, 92, 138, 174, 201, 545
SsiI	CCGC	1 cut(s)	349
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	4 cut(s)	232, 233, 352, 510
TaaI	ACNGT	1 cut(s)	251
TasI	AATT	6 cut(s)	44, 92, 138, 174, 201, 545
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	3 cut(s)	72, 179, 369
Tru9I	TTAA	3 cut(s)	72, 179, 369
TscAI	CASTG	2 cut(s)	202, 254
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	4 cut(s)	12, 37, 57, 558
TspGWI	ACGGA	2 cut(s)	332, 394
TspMI	CCCGGG	1 cut(s)	233
TspRI	CASTG	2 cut(s)	202, 254
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	56, 230, 302
XapI	RAATTY	2 cut(s)	44, 138
XmaI	CCCGGG	1 cut(s)	233
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.