Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007980

Physical Location & Seq

Genomic Coordinates Reverse (-)

22252790 .. 22257481

Gene Structure 4692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATTGCCCTAACCCTAGAACCTCTTCTCTTCCACTCTCCAAGCAACTCTTCGGTTTCAGCTTACCTTCTTCTTCCACCGCCAAAACCACCACACTCAAACTCCGCTCCCGAAACCCTACCTCCTTCACTCCAACACCTATCAAATGCTCCATTTCAGAAGCCGCCGCCCCCGTCGAGAAGAAGAAATTGATGAGGAGAAGTGACATAAGGAACATAGCCATTGTAGCCCATGTTGATCATGGAAAGACAACTCTGGTTGATTCCATGTTGAGACAAGCAAAGGTGTTTCGTGATAACCAAGTTGTCCAAGAAAGGATAATGGACTCCAATGATATAGAGCGTGAAAGGGGGATTACAATTTTGAGTAAAAACACATCTAAACTTCATAAAGTTAATTCCTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

10.28

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	69 - 127	2.5e-17	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13650 AT5G13650
fragaria_vesca	FvH4_6g23530 FvH4_6g23530 FvH4_6g23530 FvH4_6g23530
malus_domestica	MD07G1028800.v1.1 MD12G1072500.v1.1 MD14G1069900.v1.1
prunus_persica	Prupe.7G064400_v2.0.a1
pyrus_communis	pycom12g06100 pycom12g06110 pycom14g05790
rosa_chinensis	RchiOBHm_Chr3g0481531
rosa_laevigata	RLG00000023388
rosa_multiflora	Rmu_sc0010846.1_g000003 Rmu_sc0040423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400150 Rroxscaffold_6G00400350
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243700 Rh3BG278800 Rh3DG270600
rosa_wichuraiana	Rw3G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	4 cut(s)	81, 106, 165, 168
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	165, 168
BlsI	GCNGC	2 cut(s)	166, 169
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 107, 117, 137
BseRI	GAGGAG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	4 cut(s)	81, 106, 165, 168
BsrBI	CCGCTC	1 cut(s)	108
BssMI	GATC	1 cut(s)	238
Bst6I	CTCTTC	3 cut(s)	31, 36, 56
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	227
CviAII	CATG	3 cut(s)	233, 242, 268
CviJI	RGCY	4 cut(s)	63, 164, 221, 230
CviKI_1	RGCY	4 cut(s)	63, 164, 221, 230
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eam1104I	CTCTTC	3 cut(s)	31, 36, 56
EarI	CTCTTC	3 cut(s)	31, 36, 56
FaeI	CATG	3 cut(s)	236, 245, 271
FaiI	YATR	7 cut(s)	209, 218, 234, 243, 269, 338, 390
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	232, 241, 267
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	165, 168
Fsp4HI	GCNGC	2 cut(s)	165, 168
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	165, 168
Hin1II	CATG	3 cut(s)	236, 245, 271
HinfI	GANTC	2 cut(s)	263, 326
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	111, 178, 293
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	78, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	236, 245, 271
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	113, 155
LpnPI	CCDG	1 cut(s)	242
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	238
MboII	GAAGA	7 cut(s)	18, 23, 43, 63, 66, 193, 196
MluCI	AATT	3 cut(s)	188, 360, 397
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	34, 133, 189
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	236, 245, 271
NmuCI	GTSAC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	166, 169
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	165, 168
Sau3AI	GATC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	320
SetI	ASST	6 cut(s)	26, 65, 70, 125, 142, 288
Sse9I	AATT	3 cut(s)	188, 360, 397
SsiI	CCGC	4 cut(s)	81, 106, 165, 168
SspMI	CTAG	1 cut(s)	18
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	188, 360, 397
TauI	GCSGC	2 cut(s)	167, 170
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.