Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007980

Physical Location & Seq

Genomic Coordinates Forward (+)

6189221 .. 6190658

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGTACCCGGGATCAGGGTTCACTGGTTGCCTTTGAGGGTGGAACGAGTACATCTTACGCCATTTCTAGCTCACAGGAGAGGGGGCAGTTGTTTATTGGTCCCGGGGTGGAAGTTTATAAAGGTCAGATAGTTGGCATCCATCAGCGGCCTGGGGACTTGTCCCTTAATGTGTGTAAGAAGAAGGCTGCAACAAATATCCGTTCCAACAAAGAACAAACAGTGATTCTTGACACCCCATTGGACTACAGTCTGGATGACTGCATTGAGTATATTCAAGAGGATGAATTGGTGGAGGTCACTCCCGCAAGTATCCGAATGTGCAAGAACCCAAAGTTTTCAAAGAAATCAAACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

120

Amino Acids

13.13

Weight (kDa)

6.57

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13650 AT5G13650
fragaria_vesca	FvH4_6g23530 FvH4_6g23530 FvH4_6g23530 FvH4_6g23530
malus_domestica	MD07G1028800.v1.1 MD12G1072500.v1.1 MD14G1069900.v1.1
prunus_persica	Prupe.7G064400_v2.0.a1
pyrus_communis	pycom12g06100 pycom12g06110 pycom14g05790
rosa_chinensis	RchiOBHm_Chr3g0481531
rosa_laevigata	RLG00000023388
rosa_multiflora	Rmu_sc0010846.1_g000003 Rmu_sc0040423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400150 Rroxscaffold_6G00400350
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243700 Rh3BG278800 Rh3DG270600
rosa_wichuraiana	Rw3G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AciI	CCGC	2 cut(s)	148, 306
AclWI	GGATC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	7, 52
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	278, 342
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	2 cut(s)	9, 104
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	4 cut(s)	10, 11, 105, 106
AvaI	CYCGRG	2 cut(s)	9, 104
AvaII	GGWCC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	323
BcnI	CCSGG	4 cut(s)	10, 11, 105, 106
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	149, 189
BlsI	GCNGC	2 cut(s)	150, 190
Bme1390I	CCNGG	5 cut(s)	10, 11, 105, 106, 153
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	2 cut(s)	9, 104
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	5 cut(s)	10, 11, 105, 106, 153
BmsI	GCATC	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	249
BpuMI	CCSGG	4 cut(s)	10, 11, 105, 106
BsaJI	CCNNGG	4 cut(s)	9, 104, 105, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	4 cut(s)	9, 104, 105, 152
BseGI	GGATG	3 cut(s)	138, 262, 289
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	175
BshFI	GGCC	1 cut(s)	151
BsiHKCI	CYCGRG	2 cut(s)	9, 104
BsiSI	CCGG	2 cut(s)	10, 105
BslFI	GGGAC	3 cut(s)	87, 148, 170
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmFI	GGGAC	3 cut(s)	87, 148, 170
BsnI	GGCC	1 cut(s)	151
BsoBI	CYCGRG	2 cut(s)	9, 104
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	148, 306
BspANI	GGCC	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	4 cut(s)	9, 104, 105, 152
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	223, 251
BstF5I	GGATG	3 cut(s)	138, 262, 289
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	5 cut(s)	8, 9, 103, 104, 151
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	138, 262, 289
BtsIMutI	CAGTG	2 cut(s)	23, 228
Cfr13I	GGNCC	1 cut(s)	101
Cfr9I	CCCGGG	2 cut(s)	9, 104
Csp6I	GTAC	2 cut(s)	6, 51
CviJI	RGCY	3 cut(s)	72, 151, 188
CviKI_1	RGCY	3 cut(s)	72, 151, 188
CviQI	GTAC	2 cut(s)	6, 51
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	9, 104
EcoRII	CCWGG	1 cut(s)	151
FaiI	YATR	2 cut(s)	120, 273
FaqI	GGGAC	3 cut(s)	87, 148, 170
FauI	CCCGC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	149, 189
FokI	GGATG	3 cut(s)	125, 269, 296
Fsp4HI	GCNGC	2 cut(s)	149, 189
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	2 cut(s)	149, 189
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	10, 105
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	10, 105
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	129, 317
Hpy188III	TCNNGA	3 cut(s)	230, 254, 278
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	223, 251
HpyCH4V	TGCA	3 cut(s)	191, 264, 324
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	2, 11, 23, 62, 118, 138, 165, 239, 340
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	4 cut(s)	31, 75, 274, 289
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	10, 105
MspR9I	CCNGG	5 cut(s)	10, 11, 105, 106, 153
MvaI	CCWGG	1 cut(s)	153
NciI	CCSGG	4 cut(s)	10, 11, 105, 106
NdeII	GATC	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	150, 190
PshAI	GACNNNNGTC	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	7, 52
RsaNI	GTAC	2 cut(s)	6, 51
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	149, 189
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	5 cut(s)	10, 11, 105, 106, 153
SetI	ASST	4 cut(s)	74, 127, 300, 359
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	101
SmaI	CCCGGG	2 cut(s)	11, 106
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	148, 306
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	5 cut(s)	8, 9, 103, 104, 151
TaaI	ACNGT	2 cut(s)	223, 251
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	50
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	30, 228
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	191
TspMI	CCCGGG	2 cut(s)	9, 104
TspRI	CASTG	2 cut(s)	30, 228
VpaK11BI	GGWCC	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmaI	CCCGGG	2 cut(s)	9, 104
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.