Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040423.1

Orthogroup ID

OG0007980

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 555

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040423.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgttatttgcccttggacctcaacatccagcccatattcatgagacctcagcgttatacttgttctctgtttcacctgagtcagaaggcacaaacctgatcaaatataagattccaactcgtggccttcttggtttgcgaaatgcaattttaacagcttctcgtggcacagctattctgaatacaatatttgatagctatggaccttgggctggtgatatgagtacccgggatctgggttcactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

82

Amino Acids

8.87

Weight (kDa)

6.82

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13650 AT5G13650
fragaria_vesca	FvH4_6g23530 FvH4_6g23530 FvH4_6g23530 FvH4_6g23530
malus_domestica	MD07G1028800.v1.1 MD12G1072500.v1.1 MD14G1069900.v1.1
prunus_persica	Prupe.7G064400_v2.0.a1
pyrus_communis	pycom12g06100 pycom12g06110 pycom14g05790
rosa_chinensis	RchiOBHm_Chr3g0481531
rosa_laevigata	RLG00000023388
rosa_multiflora	Rmu_sc0010846.1_g000003 Rmu_sc0040423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400150 Rroxscaffold_6G00400350
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243700 Rh3BG278800 Rh3DG270600
rosa_wichuraiana	Rw3G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AclWI	GGATC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	122, 212, 235
AluBI	AGCT	3 cut(s)	158, 173, 198
AluI	AGCT	3 cut(s)	158, 173, 198
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	17, 203
AsuC2I	CCSGG	2 cut(s)	229, 230
AsuHPI	GGTGA	2 cut(s)	66, 227
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	2 cut(s)	17, 203
BauI	CACGAG	2 cut(s)	120, 162
BbvCI	CCTCAGC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	2 cut(s)	229, 230
BcoDI	GTCTC	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	229, 230
Bme18I	GGWCC	2 cut(s)	17, 203
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	17, 203
BmrFI	CCNGG	2 cut(s)	229, 230
Bpu10I	CCTNAGC	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	229, 230
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	13, 206, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 212, 235
BseDI	CCNNGG	3 cut(s)	13, 206, 228
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	3 cut(s)	122, 212, 235
BseMII	CTCAG	2 cut(s)	63, 69
BshFI	GGCC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	122, 212, 235
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	99, 232
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	62, 70
BspHI	TCATGA	1 cut(s)	40
BspPI	GGATC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	13, 206, 228
BssMI	GATC	2 cut(s)	99, 232
BssSI	CACGAG	2 cut(s)	120, 162
BssT1I	CCWWGG	2 cut(s)	13, 206
Bst2BI	CACGAG	2 cut(s)	120, 162
BstDEI	CTNAG	2 cut(s)	49, 78
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	102, 235
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	99, 232
BstSCI	CCNGG	2 cut(s)	227, 228
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	17, 203
Cfr9I	CCCGGG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	6 cut(s)	32, 126, 158, 173, 198, 212
CviKI_1	RGCY	6 cut(s)	32, 126, 158, 173, 198, 212
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	2 cut(s)	49, 78
DpnI	GATC	2 cut(s)	101, 234
DpnII	GATC	2 cut(s)	99, 232
Eco130I	CCWWGG	2 cut(s)	13, 206
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	17, 203
Eco88I	CYCGRG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	13, 206
ErhI	CCWWGG	2 cut(s)	13, 206
FaeI	CATG	1 cut(s)	44
FaiI	YATR	6 cut(s)	36, 42, 58, 108, 201, 221
FatI	CATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	99
FokI	GGATG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	2 cut(s)	80, 112
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	66, 227
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	85, 180
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	80, 137
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	49, 78
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	99, 232
LpnPI	CCDG	6 cut(s)	42, 90, 110, 198, 221, 242
MalI	GATC	2 cut(s)	101, 234
MboI	GATC	2 cut(s)	99, 232
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	2 cut(s)	30, 58
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	229, 230
NciI	CCSGG	2 cut(s)	229, 230
NdeII	GATC	2 cut(s)	99, 232
NlaIII	CATG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	17, 203
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	99, 232
Sau96I	GGNCC	2 cut(s)	17, 203
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	229, 230
SetI	ASST	8 cut(s)	22, 50, 79, 99, 160, 175, 200, 208
SinI	GGWCC	2 cut(s)	17, 203
SmaI	CCCGGG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	147
SspI	AATATT	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	227, 228
StyI	CCWWGG	2 cut(s)	13, 206
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	29
TspMI	CCCGGG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	17, 203
XmaI	CCCGGG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.