Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007980

Physical Location & Seq

Genomic Coordinates Forward (+)

27349800 .. 27358101

Gene Structure 8302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG278800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGGAAATGGCAACCAGCTCCTCCTTCTCCTTCTCTATCCCAAACCCTAACCCTAGAACCTCTTCTCTTCCACTCTCCAACCAACTCTTCGGTTTCAGCTTACCTTCTTCTTCCACCGCCAAAACCACCACACTCAAACTCCGCTCCCGAAACCCTACCTCCTTCGCTCCAACACCTATCAAATGCTCCGTTTCAGAAGCCACCGAAGCCGCCGCCCCCGTCGAGAAGAAGAAATTGATGAGGAGAAGTGACATAAGGAACATAGCCATTGTAGCCCATGTTGATCATGGAAAGACAACTCTGGTTGATTCCATGTTGAGGCAAGCAAAGGTGTTTCGCGATAACCAAGTTGTCCAAGAAAGGATAATGGACTCCAATGATATAGAGCGTGAAAGGGGGATTACAATTTTGAGTAAAAACACATCTATTACGTATAAAGACTCGAAAATTAATATCATTGATACTCCTGGCCATTCTGACTTTGGAGGGGAGGTCGAGCGCATCCTCAATATGGTGGAAGGGATTCTTTTAGTGGTAGATTCTGTTGAGGGCCCGATGCCACAGACAAGATTTGTTTTGAAGAAGGCTCTAGAATTTGGACATGCTGTCGTTGTTGTTGTCAATAAAATTGATAGGCCTTCCGCCCGTCCGGATTTTGTGATCAATTCCACTTTTGAACTCTTTATTGAACTAAATGCTACTGATGAACAGTGTGATTTTCAAGCAATATATGCTAGTGGGATTAAAGGAAAGGCAGGCTTATCGGCTGATAATCTGTCAGATGATCTTGGGCCCCTTTTTGAGGCCATAATGAGATGCATCCCTGGACCAGCCATTGAAGATGGTGCACTGCAAATGCTTGCTACAAATATCGAGTACGATGAGCATAAAGGTCGAATAGCTATTGGACGCTTGCATGCTGGGGAACTTCGGAAAGGAATGGATGTGAAGGTATGTACCTCAGAAGATTCCTGTCGGTTTGCTAAAGTTAGTGAGCTTTTTGTGTATGAGAAGTTCAATAGGGTTTCAGTAGACAGTGTAAAGGCTGGTGATATATGTGCTGTTTGTGGAATTAATGATATTCAGATTGGTGAGACAATTGCTGATAAGACAGATGGGAAGCCATTACCTGCCATTAGGGTGGAGGAACCAACAGTGAAAATGGCTTTCGCTATAAACACTTCACCATTTGTTGGGCGCGAGGGAAAGTATGTCACCAGTAGAAACTTGCGAGATCGGCTTTCTCGTGAGCTTGAGCGTAACTTGGCAATGAAAGTTGAAGATGGTGAAACAGCAGATACCTTCATTGTTAGTGGACGAGGCACTTTGCATATTACCATATTGATTGAGAACATGCGAAGAGAAGGATTTGAATTTATGGTCGGACCTCCCAAAGTTATTAACAAAAGGGTGAATGACAAGTTGCTGGAACCTTATGAGATTGCCACTGTAGAGGTGCCAGAAGAGCACATGGGTCCAGTCGTTGAACTTCTTGGCAAAAGGCGGGGGCAAATGATTGATATGCAGGGGCTTGGGTCAGAAGGCACAAACCTGATCAAATATAAGATTCCAACTCGTGGCCTTCTTGGTTTACGAAATGCAATTTTAACAGCTTCTCGTGGCACAGCTATTCTGAATACAATATTTGATAGCTATGGACCTTGGGCTGGTGATATGAGTACCCGGGATCTGGGTTCACTGGTTGCCTTTGAGGGTGGAACGAGTACTTCTTATGCCCTTTCTAGTTCACAGGATAGAGGACAGTTGTTTATTGGTCCTGGGGTGGATGTTTATAAAGGTCAGATAGTTGGCATCCATCAGCGGTCTGGGGACTTATCTCTTAACGTATGTAAAAAGAAGGCTGCAACAAACATCCGTTCCAACAAAGAACAATCAGTCATTCTTGATACCCCATTGGATTACAGTCTGGATGACTGCATTGAGTACATTCAAGAGGATGAACTGGTGGAGGTTACTCCATCGAGCATCCGGATGTGCAAAAACCCCAAGTTCTCAAAGAAATCATCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

677

Amino Acids

74.46

Weight (kDa)

6.25

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	84 - 275	9.6e-53	Elongation factor Tu GTP binding domain
EF-G_D2	PF22042	287 - 368	5.7e-09	Elongation factor G domain 2
GTP_EFTU_D2	PF03144	298 - 368	1.8e-11	Elongation factor Tu domain 2
EFG_C	PF00679	474 - 560	2.1e-21	Elongation factor G C-terminus
BipA_C	PF21018	565 - 668	1.6e-38	TypA/BipA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13650 AT5G13650
fragaria_vesca	FvH4_6g23530 FvH4_6g23530 FvH4_6g23530 FvH4_6g23530
malus_domestica	MD07G1028800.v1.1 MD12G1072500.v1.1 MD14G1069900.v1.1
prunus_persica	Prupe.7G064400_v2.0.a1
pyrus_communis	pycom12g06100 pycom12g06110 pycom14g05790
rosa_chinensis	RchiOBHm_Chr3g0481531
rosa_laevigata	RLG00000023388
rosa_multiflora	Rmu_sc0010846.1_g000003 Rmu_sc0040423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400150 Rroxscaffold_6G00400350
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243700 Rh3BG278800 Rh3DG270600
rosa_wichuraiana	Rw3G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1794
Acc36I	ACCTGC	1 cut(s)	1138
AccB1I	GGYRCC	1 cut(s)	1456
AccB7I	CCANNNNNTGG	2 cut(s)	1193, 1577
AccBSI	CCGCTC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	1032
AccII	CGCG	2 cut(s)	339, 1200
AccIII	TCCGGA	2 cut(s)	649, 1989
AciI	CCGC	7 cut(s)	117, 142, 210, 213, 642, 1504, 1822
AclWI	GGATC	1 cut(s)	1695
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	2 cut(s)	593, 1373
AfaI	GTAC	5 cut(s)	878, 958, 1681, 1726, 1946
AfiI	CCNNNNNNNGG	7 cut(s)	318, 511, 802, 1193, 1577, 1667, 1690
AhdI	GACNNNNNGTC	1 cut(s)	605
AjnI	CCWGG	3 cut(s)	466, 823, 1777
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	8 cut(s)	18, 99, 902, 997, 1252, 1613, 1628, 1653
AluI	AGCT	8 cut(s)	18, 99, 902, 997, 1252, 1613, 1628, 1653
Alw21I	GWGCWC	2 cut(s)	850, 1470
Alw26I	GTCTC	1 cut(s)	1088
Alw44I	GTGCAC	1 cut(s)	846
AlwI	GGATC	1 cut(s)	1695
Ama87I	CYCGRG	1 cut(s)	1683
Aor13HI	TCCGGA	2 cut(s)	649, 1989
AoxI	GGCC	6 cut(s)	469, 550, 635, 791, 804, 1579
ApaI	GGGCCC	2 cut(s)	554, 795
ApaLI	GTGCAC	1 cut(s)	846
ApeKI	GCWGC	1 cut(s)	1862
ApoI	RAATTY	2 cut(s)	593, 1373
AseI	ATTAAT	2 cut(s)	450, 1074
Asp700I	GAANNNNTTC	2 cut(s)	61, 522
AspLEI	GCGC	2 cut(s)	501, 1200
AspS9I	GGNCC	9 cut(s)	550, 551, 791, 792, 827, 1385, 1475, 1658, 1775
AsuC2I	CCSGG	2 cut(s)	1684, 1685
AsuHPI	GGTGA	7 cut(s)	1061, 1103, 1176, 1207, 1298, 1423, 1682
AvaI	CYCGRG	1 cut(s)	1683
AvaII	GGWCC	5 cut(s)	827, 1385, 1475, 1658, 1775
BaeGI	GKGCMC	3 cut(s)	554, 795, 850
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	1456
BanII	GRGCYC	2 cut(s)	554, 795
BauI	CACGAG	3 cut(s)	1245, 1575, 1617
Bbv12I	GWGCWC	2 cut(s)	850, 1470
BbvI	GCAGC	1 cut(s)	1849
BccI	CCATC	5 cut(s)	836, 1109, 1277, 1824, 1987
BcgI	CGANNNNNNTGC	4 cut(s)	744, 778, 875, 909
BciT130I	CCWGG	3 cut(s)	468, 825, 1779
BclI	TGATCA	3 cut(s)	283, 660, 1554
BcnI	CCSGG	2 cut(s)	1684, 1685
BcoDI	GTCTC	1 cut(s)	1088
BfaI	CTAG	4 cut(s)	54, 590, 735, 1743
BfmI	CTRYAG	1 cut(s)	1449
BfuAI	ACCTGC	1 cut(s)	1138
BisI	GCNGC	3 cut(s)	210, 213, 1863
BlsI	GCNGC	3 cut(s)	211, 214, 1864
BmcAI	AGTACT	1 cut(s)	1726
Bme1390I	CCNGG	5 cut(s)	468, 825, 1684, 1685, 1779
Bme18I	GGWCC	5 cut(s)	827, 1385, 1475, 1658, 1775
BmeRI	GACNNNNNGTC	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	1683
BmgT120I	GGNCC	9 cut(s)	550, 551, 791, 792, 827, 1385, 1475, 1658, 1775
BmiI	GGNNCC	7 cut(s)	552, 793, 794, 1149, 1431, 1458, 1476
BmrFI	CCNGG	5 cut(s)	468, 825, 1684, 1685, 1779
BmsI	GCATC	6 cut(s)	510, 546, 806, 828, 1821, 1995
BpuEI	CTTGAG	1 cut(s)	1274
BpuMI	CCSGG	2 cut(s)	1684, 1685
BsaAI	YACGTR	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	823, 1661, 1683, 1778
BsaWI	WCCGGW	2 cut(s)	649, 1989
BsaXI	ACNNNNNCTCC	6 cut(s)	123, 143, 153, 173, 477, 507
Bsc4I	CCNNNNNNNGG	7 cut(s)	318, 511, 802, 1193, 1577, 1667, 1690
Bse1I	ACTGG	4 cut(s)	1218, 1478, 1704, 1968
Bse3DI	GCAATG	1 cut(s)	1275
BseAI	TCCGGA	2 cut(s)	649, 1989
BseBI	CCWGG	3 cut(s)	468, 825, 1779
BseDI	CCNNGG	4 cut(s)	823, 1661, 1683, 1778
BseLI	CCNNNNNNNGG	7 cut(s)	318, 511, 802, 1193, 1577, 1667, 1690
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	4 cut(s)	1218, 1478, 1704, 1968
BseRI	GAGGAG	2 cut(s)	10, 256
BseSI	GKGCMC	3 cut(s)	554, 795, 850
BseXI	GCAGC	1 cut(s)	1849
BseYI	CCCAGC	1 cut(s)	920
Bsh1236I	CGCG	2 cut(s)	339, 1200
BshFI	GGCC	6 cut(s)	471, 552, 637, 793, 806, 1581
BshNI	GGYRCC	1 cut(s)	1456
BsiHKAI	GWGCWC	2 cut(s)	850, 1470
BsiHKCI	CYCGRG	1 cut(s)	1683
BsiSI	CCGG	3 cut(s)	650, 1684, 1990
BslFI	GGGAC	1 cut(s)	1844
BslI	CCNNNNNNNGG	7 cut(s)	318, 511, 802, 1193, 1577, 1667, 1690
BsmAI	GTCTC	1 cut(s)	1088
BsmFI	GGGAC	1 cut(s)	1844
BsnI	GGCC	6 cut(s)	471, 552, 637, 793, 806, 1581
BsoBI	CYCGRG	1 cut(s)	1683
Bsp120I	GGGCCC	2 cut(s)	550, 791
Bsp1286I	GDGCHC	4 cut(s)	554, 795, 850, 1470
Bsp13I	TCCGGA	2 cut(s)	649, 1989
Bsp143I	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
Bsp68I	TCGCGA	1 cut(s)	339
BspACI	CCGC	7 cut(s)	117, 142, 210, 213, 642, 1504, 1822
BspANI	GGCC	6 cut(s)	471, 552, 637, 793, 806, 1581
BspCNI	CTCAG	1 cut(s)	974
BspEI	TCCGGA	2 cut(s)	649, 1989
BspFNI	CGCG	2 cut(s)	339, 1200
BspLI	GGNNCC	7 cut(s)	552, 793, 794, 1149, 1431, 1458, 1476
BspMI	ACCTGC	1 cut(s)	1138
BspPI	GGATC	1 cut(s)	1695
BspQI	GCTCTTC	1 cut(s)	1458
BspT107I	GGYRCC	1 cut(s)	1456
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	1275
BsrI	ACTGG	4 cut(s)	1218, 1478, 1704, 1968
BssECI	CCNNGG	4 cut(s)	823, 1661, 1683, 1778
BssMI	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
BssSI	CACGAG	3 cut(s)	1245, 1575, 1617
BssT1I	CCWWGG	1 cut(s)	1661
Bst2BI	CACGAG	3 cut(s)	1245, 1575, 1617
Bst2UI	CCWGG	3 cut(s)	468, 825, 1779
Bst4CI	ACNGT	6 cut(s)	711, 1037, 1156, 1450, 1764, 1925
Bst6I	CTCTTC	5 cut(s)	67, 72, 92, 1354, 1458
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	5 cut(s)	324, 757, 861, 914, 918
BstDEI	CTNAG	1 cut(s)	961
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstFNI	CGCG	2 cut(s)	339, 1200
BstHHI	GCGC	2 cut(s)	501, 1200
BstKTI	GATC	6 cut(s)	286, 663, 787, 1237, 1557, 1690
BstMAI	GTCTC	1 cut(s)	1088
BstMBI	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 272, 731, 1237, 1465
BstNI	CCWGG	3 cut(s)	468, 825, 1779
BstNSI	RCATGY	3 cut(s)	605, 920, 1357
BstSCI	CCNGG	5 cut(s)	466, 823, 1682, 1683, 1777
BstSFI	CTRYAG	1 cut(s)	1449
BstSLI	GKGCMC	3 cut(s)	554, 795, 850
BstSNI	TACGTA	1 cut(s)	432
BstUI	CGCG	2 cut(s)	339, 1200
BstV1I	GCAGC	1 cut(s)	1849
BstX2I	RGATCY	1 cut(s)	1687
BstXI	CCANNNNNNTGG	1 cut(s)	1141
BstYI	RGATCY	1 cut(s)	1687
BsuRI	GGCC	6 cut(s)	471, 552, 637, 793, 806, 1581
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	6 cut(s)	716, 848, 1042, 1161, 1446, 1697
BtuMI	TCGCGA	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	1138
Cac8I	GCNNGC	5 cut(s)	324, 757, 861, 914, 918
CfoI	GCGC	2 cut(s)	501, 1200
Cfr13I	GGNCC	9 cut(s)	550, 551, 791, 792, 827, 1385, 1475, 1658, 1775
Cfr9I	CCCGGG	1 cut(s)	1683
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	5 cut(s)	877, 957, 1680, 1725, 1945
CviAII	CATG	7 cut(s)	278, 287, 313, 602, 917, 1354, 1471
CviQI	GTAC	5 cut(s)	877, 957, 1680, 1725, 1945
DdeI	CTNAG	1 cut(s)	961
DpnI	GATC	6 cut(s)	285, 662, 786, 1236, 1556, 1689
DpnII	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
DriI	GACNNNNNGTC	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	5 cut(s)	67, 72, 92, 1354, 1458
Eam1105I	GACNNNNNGTC	1 cut(s)	605
EarI	CTCTTC	5 cut(s)	67, 72, 92, 1354, 1458
EciI	GGCGGA	1 cut(s)	631
Eco105I	TACGTA	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	1661
Eco147I	AGGCCT	1 cut(s)	637
Eco24I	GRGCYC	2 cut(s)	554, 795
Eco47I	GGWCC	5 cut(s)	827, 1385, 1475, 1658, 1775
Eco88I	CYCGRG	1 cut(s)	1683
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoO109I	RGGNCCY	2 cut(s)	550, 792
EcoRII	CCWGG	3 cut(s)	466, 823, 1777
EcoT14I	CCWWGG	1 cut(s)	1661
EcoT22I	ATGCAT	1 cut(s)	821
EcoT38I	GRGCYC	2 cut(s)	554, 795
ErhI	CCWWGG	1 cut(s)	1661
FaeI	CATG	7 cut(s)	281, 290, 316, 605, 920, 1357, 1474
FalI	AAGNNNNNCTT	4 cut(s)	510, 542, 743, 775
FaqI	GGGAC	1 cut(s)	1844
FatI	CATG	7 cut(s)	277, 286, 312, 601, 916, 1353, 1470
FauI	CCCGC	1 cut(s)	1497
FbaI	TGATCA	3 cut(s)	283, 660, 1554
FblI	GTMKAC	1 cut(s)	1032
Fnu4HI	GCNGC	3 cut(s)	210, 213, 1863
FriOI	GRGCYC	2 cut(s)	554, 795
Fsp4HI	GCNGC	3 cut(s)	210, 213, 1863
FspBI	CTAG	4 cut(s)	54, 590, 735, 1743
GlaI	GCGC	2 cut(s)	500, 1199
GluI	GCNGC	3 cut(s)	210, 213, 1863
GsaI	CCCAGC	1 cut(s)	924
HaeIII	GGCC	6 cut(s)	471, 552, 637, 793, 806, 1581
HapII	CCGG	3 cut(s)	650, 1684, 1990
HgaI	GACGC	1 cut(s)	918
HhaI	GCGC	2 cut(s)	501, 1200
Hin1II	CATG	7 cut(s)	281, 290, 316, 605, 920, 1357, 1474
Hin6I	GCGC	2 cut(s)	499, 1198
HinP1I	GCGC	2 cut(s)	499, 1198
HinfI	GANTC	7 cut(s)	308, 371, 440, 523, 539, 968, 1567
HpaII	CCGG	3 cut(s)	650, 1684, 1990
HphI	GGTGA	7 cut(s)	1061, 1103, 1176, 1207, 1298, 1423, 1682
Hpy166II	GTNNAC	6 cut(s)	848, 1033, 1316, 1592, 1697, 1748
Hpy8I	GTNNAC	6 cut(s)	848, 1033, 1316, 1592, 1697, 1748
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4III	ACNGT	6 cut(s)	711, 1037, 1156, 1450, 1764, 1925
HpyCH4IV	ACGT	2 cut(s)	431, 1845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 272, 731, 1237, 1465
HpyF3I	CTNAG	1 cut(s)	961
HpySE526I	ACGT	2 cut(s)	431, 1845
Hsp92II	CATG	7 cut(s)	281, 290, 316, 605, 920, 1357, 1474
HspAI	GCGC	2 cut(s)	499, 1198
Kpn2I	TCCGGA	2 cut(s)	649, 1989
Ksp22I	TGATCA	3 cut(s)	283, 660, 1554
Kzo9I	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
LguI	GCTCTTC	1 cut(s)	1458
LmnI	GCTCC	4 cut(s)	23, 149, 172, 191
Lsp1109I	GCAGC	1 cut(s)	1849
LweI	GCATC	6 cut(s)	510, 546, 806, 828, 1821, 1995
MaeI	CTAG	4 cut(s)	54, 590, 735, 1743
MaeII	ACGT	2 cut(s)	431, 1845
MaeIII	GTNAC	4 cut(s)	248, 1213, 1259, 1972
MalI	GATC	6 cut(s)	285, 662, 786, 1236, 1556, 1689
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
MfeI	CAATTG	1 cut(s)	1098
MflI	RGATCY	1 cut(s)	1687
MhlI	GDGCHC	4 cut(s)	554, 795, 850, 1470
MlsI	TGGCCA	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	365, 434
MmeI	TCCRAC	5 cut(s)	102, 194, 1363, 1595, 1905
Mox20I	TGGCCA	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	821
MroI	TCCGGA	2 cut(s)	649, 1989
MroXI	GAANNNNTTC	2 cut(s)	61, 522
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	6 cut(s)	450, 744, 1074, 1401, 1607, 1842
MslI	CAYNNNNRTG	2 cut(s)	1139, 1991
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	1822
MspI	CCGG	3 cut(s)	650, 1684, 1990
MspR9I	CCNGG	5 cut(s)	468, 825, 1684, 1685, 1779
MunI	CAATTG	1 cut(s)	1098
MvaI	CCWGG	3 cut(s)	468, 825, 1779
MvnI	CGCG	2 cut(s)	339, 1200
MwoI	GCNNNNNNNGC	5 cut(s)	206, 272, 731, 1237, 1465
NciI	CCSGG	2 cut(s)	1684, 1685
NdeII	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
NlaIII	CATG	7 cut(s)	281, 290, 316, 605, 920, 1357, 1474
NlaIV	GGNNCC	7 cut(s)	552, 793, 794, 1149, 1431, 1458, 1476
NmuCI	GTSAC	2 cut(s)	248, 1213
NruI	TCGCGA	1 cut(s)	339
NsiI	ATGCAT	1 cut(s)	821
NspI	RCATGY	3 cut(s)	605, 920, 1357
PaeI	GCATGC	1 cut(s)	920
PceI	AGGCCT	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	1458
PcsI	WCGNNNNNNNCGW	1 cut(s)	1243
PdmI	GAANNNNTTC	2 cut(s)	61, 522
PfeI	GAWTC	5 cut(s)	308, 523, 539, 968, 1567
PflMI	CCANNNNNTGG	2 cut(s)	1193, 1577
PkrI	GCNGC	3 cut(s)	211, 214, 1864
PleI	GAGTC	2 cut(s)	365, 434
PpsI	GAGTC	2 cut(s)	365, 434
Ppu21I	YACGTR	1 cut(s)	432
PshBI	ATTAAT	2 cut(s)	450, 1074
PsiI	TTATAA	1 cut(s)	1794
Psp6I	CCWGG	3 cut(s)	466, 823, 1777
PspFI	CCCAGC	1 cut(s)	920
PspGI	CCWGG	3 cut(s)	466, 823, 1777
PspN4I	GGNNCC	7 cut(s)	552, 793, 794, 1149, 1431, 1458, 1476
PspOMI	GGGCCC	2 cut(s)	550, 791
PspPI	GGNCC	9 cut(s)	550, 551, 791, 792, 827, 1385, 1475, 1658, 1775
PsrI	GAACNNNNNNTAC	2 cut(s)	998, 1030
PsuI	RGATCY	1 cut(s)	1687
RruI	TCGCGA	1 cut(s)	339
RsaI	GTAC	5 cut(s)	878, 958, 1681, 1726, 1946
RsaNI	GTAC	5 cut(s)	877, 957, 1680, 1725, 1945
RseI	CAYNNNNRTG	2 cut(s)	1139, 1991
SapI	GCTCTTC	1 cut(s)	1458
SaqAI	TTAA	6 cut(s)	450, 744, 1074, 1401, 1607, 1842
SatI	GCNGC	3 cut(s)	210, 213, 1863
Sau3AI	GATC	6 cut(s)	283, 660, 784, 1234, 1554, 1687
Sau96I	GGNCC	9 cut(s)	550, 551, 791, 792, 827, 1385, 1475, 1658, 1775
ScaI	AGTACT	1 cut(s)	1726
SchI	GAGTC	2 cut(s)	365, 434
ScrFI	CCNGG	5 cut(s)	468, 825, 1684, 1685, 1779
SduI	GDGCHC	4 cut(s)	554, 795, 850, 1470
SfaNI	GCATC	6 cut(s)	510, 546, 806, 828, 1821, 1995
SfcI	CTRYAG	1 cut(s)	1449
SinI	GGWCC	5 cut(s)	827, 1385, 1475, 1658, 1775
SmaI	CCCGGG	1 cut(s)	1685
SmiMI	CAYNNNNRTG	2 cut(s)	1139, 1991
SmlI	CTYRAG	1 cut(s)	1253
SmoI	CTYRAG	1 cut(s)	1253
SnaBI	TACGTA	1 cut(s)	432
SphI	GCATGC	1 cut(s)	920
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	7 cut(s)	117, 142, 210, 213, 642, 1504, 1822
SspI	AATATT	1 cut(s)	1644
SspMI	CTAG	4 cut(s)	54, 590, 735, 1743
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	5 cut(s)	466, 823, 1682, 1683, 1777
StyI	CCWWGG	1 cut(s)	1661
TaaI	ACNGT	6 cut(s)	711, 1037, 1156, 1450, 1764, 1925
TaiI	ACGT	2 cut(s)	434, 1848
TaqI	TCGA	6 cut(s)	222, 443, 495, 873, 895, 1982
TatI	WGTACW	2 cut(s)	1724, 1944
TauI	GCSGC	2 cut(s)	212, 215
TfiI	GAWTC	5 cut(s)	308, 523, 539, 968, 1567
Tru1I	TTAA	6 cut(s)	450, 744, 1074, 1401, 1607, 1842
Tru9I	TTAA	6 cut(s)	450, 744, 1074, 1401, 1607, 1842
TscAI	CASTG	6 cut(s)	716, 855, 1042, 1161, 1453, 1704
TseFI	GTSAC	2 cut(s)	248, 1213
TseI	GCWGC	1 cut(s)	1862
Tsp45I	GTSAC	2 cut(s)	248, 1213
TspDTI	ATGAA	4 cut(s)	720, 1286, 1294, 1974
TspGWI	ACGGA	2 cut(s)	178, 1865
TspMI	CCCGGG	1 cut(s)	1683
TspRI	CASTG	6 cut(s)	716, 855, 1042, 1161, 1453, 1704
Van91I	CCANNNNNTGG	2 cut(s)	1193, 1577
VneI	GTGCAC	1 cut(s)	846
VpaK11BI	GGWCC	5 cut(s)	827, 1385, 1475, 1658, 1775
VspI	ATTAAT	2 cut(s)	450, 1074
XagI	CCTNNNNNAGG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	593, 1373
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	3 cut(s)	605, 920, 1357
XcmI	CCANNNNNNNNNTGG	3 cut(s)	284, 479, 1823
XmaI	CCCGGG	1 cut(s)	1683
XmiI	GTMKAC	1 cut(s)	1032
XmnI	GAANNNNTTC	2 cut(s)	61, 522
XspI	CTAG	4 cut(s)	54, 590, 735, 1743
ZrmI	AGTACT	1 cut(s)	1726
Zsp2I	ATGCAT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.