Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007980

Physical Location & Seq

Genomic Coordinates Forward (+)

25614833 .. 25624529

Gene Structure 9697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGGCAACCACCTCCTCCTTCTCCTTCTCTATCCCAAACCCTAACCCTAACCCTAGAACCTCTTCTCTTCCACTCTCCAAGCAGCTCTTCGGTTTCAGCTTGCCTTCTTCTTCCACCGCCAAAACCACCACACTCAAACTCCGCTCCCGAAACCCTACCTCCTTCACTCCAACACCTATCAAATGCTCCGTTTCAGAAGCCACCGCCCCCGTCGAGAAGAAGAAATTGATGAGGAGAAGTGACATAAGGAACATAGCCATTGTAGCCCATGTTGATCATGGAAAGACAACTCTGGTTGATTCCATGTTGAGGCAAGCAAAGGTGTTTCGCGATAACCAAGTTGTCCAAGAAAGGATAATGGACTCCAATGATATAGAGCGTGAAAGAGGGATTACAATTTTGAGTAAAAACACATCCATTACGTATAAAGACTCGAAAATTAATATCATTGATACTCCTGGCCATTCTGACTTTGGAGGGGAGGTCGAGCGCATCCTCAATATGGTGGAAGGGATTCTTTTAGTGGTAGATTCTGTTGAGGGCCCGATGCCACAGACAAGATTTGTTTTGAAGAAGGCTCTGGAATTCGGACATGCTGTCGTTGTTGTTGTCAATAAAATTGATAGGCCTTCCGCCCGTCCGGATTTTGTGATCAATTCCACTTTTGAACTCTTTATTGAACTAAATGCTACTGATGAACAGTGTGATTTTCAAGCAATATATGCTAGTGGGATTAAAGGAAAGGCGGGCTTATCGGCTGATAATCTGTCAGACGATCTTGGGCCCCTTTTTGAGGCCATAATGAGATGCATCCCTGGACCGGCCATTGAAGATGGTGCACTGCAAATGCTTGCTACAAATATCGAGTACGATGAGCATAAAGGTCGAATAGCTATTGGACGCTTGCATGCTGGGGAACTTCGGAAAGGAATGGATGTGAAGGTATGTACCTCAGAAGATTCCTGTCGGTTTGCTAAAGTTAGTGAGCTTTTTGTGTATGAGAAGTTCAATAGGGTTTCAGTAGACAGTGTAAAGGCTGGTGATATATGTGCTGTTTGTGGAATTAATGATATTCAGATTGGTGAGACAATTGCTGATAAGACAGATGGGAAGCCATTACCTGCCATTAGGGTGGAGGAACCAACAGTGAAAATGGCTTTCGCTATAAACACTTCACCATTTGTTGGGCGCGAGGGAAAGTATGTTACCAGTAGGAACTTGCGAGATCGGCTTTCTCGTGAGCTTGAGCGTAACTTGGCAATGAAAGTTGAAGATGGTGAAACAGCAGATACCTTCATTGTTAGTGGACGAGGCACTTTGCATATTACCATATTGATTGAGAACATGCGAAGAGAAGGATTTGAATTTATGGTCGGACCTCCCAAAGTTATTAACAAAAGGGTGAATGACAAGTTGCTGGAACCTTATGAGATTGCCACTGTAGAGGTGCCAGAAGAGCACATGGGTCCGGTCGTTGAACTTCTTGGCAAAAGGCGGGGGCAAATGATTGATATGCAGGGGCTTGGGTGTGTACTTCTTTGTTGTTATTCTTTAACTAATCTACTTTTGAATAAATTTCAAGATAAATGCACAAATAGAATTAAAGGTACTGAACTCGTGCATGATAATTATTCAGAGCATAATTGTCTTCATGGATCTAGCAATAAACCTGCAAAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031647 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050821 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

560

Amino Acids

62.0

Weight (kDa)

6.85

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	81 - 272	6.6e-53	Elongation factor Tu GTP binding domain
MMR_HSR1	PF01926	85 - 206	8.1e-06	50S ribosome-binding GTPase
EF-G_D2	PF22042	284 - 365	4.3e-09	Elongation factor G domain 2
GTP_EFTU_D2	PF03144	295 - 365	1.4e-11	Elongation factor Tu domain 2
EFG_C	PF00679	471 - 508	1.5e-08	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13650 AT5G13650
fragaria_vesca	FvH4_6g23530 FvH4_6g23530 FvH4_6g23530 FvH4_6g23530
malus_domestica	MD07G1028800.v1.1 MD12G1072500.v1.1 MD14G1069900.v1.1
prunus_persica	Prupe.7G064400_v2.0.a1
pyrus_communis	pycom12g06100 pycom12g06110 pycom14g05790
rosa_chinensis	RchiOBHm_Chr3g0481531
rosa_laevigata	RLG00000023388
rosa_multiflora	Rmu_sc0010846.1_g000003 Rmu_sc0040423.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400150 Rroxscaffold_6G00400350
rosa_rugosa	Rorug03G0192500
rosa_samantha	Rh3AG243700 Rh3BG278800 Rh3DG270600
rosa_wichuraiana	Rw3G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1129, 1678
AccB1I	GGYRCC	1 cut(s)	1447
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccBSI	CCGCTC	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	1023
AccII	CGCG	2 cut(s)	330, 1191
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	6 cut(s)	117, 142, 204, 633, 746, 1495
AclWI	GGATC	1 cut(s)	1663
AcoI	YGGCCR	2 cut(s)	460, 822
AcsI	RAATTY	3 cut(s)	584, 1364, 1574
AfaI	GTAC	4 cut(s)	869, 949, 1533, 1609
AfiI	CCNNNNNNNGG	5 cut(s)	309, 502, 793, 820, 1184
AhdI	GACNNNNNGTC	1 cut(s)	596
AjnI	CCWGG	2 cut(s)	457, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	5 cut(s)	85, 99, 893, 988, 1243
AluI	AGCT	5 cut(s)	85, 99, 893, 988, 1243
Alw21I	GWGCWC	2 cut(s)	841, 1461
Alw26I	GTCTC	1 cut(s)	1079
Alw44I	GTGCAC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	1663
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	6 cut(s)	460, 541, 626, 782, 795, 822
ApaI	GGGCCC	2 cut(s)	545, 786
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	3 cut(s)	584, 1364, 1574
AseI	ATTAAT	2 cut(s)	441, 1065
Asp700I	GAANNNNTTC	2 cut(s)	61, 513
AspLEI	GCGC	2 cut(s)	492, 1191
AspS9I	GGNCC	7 cut(s)	541, 542, 782, 783, 818, 1376, 1466
AsuHPI	GGTGA	5 cut(s)	1052, 1094, 1167, 1289, 1414
AvaII	GGWCC	3 cut(s)	818, 1376, 1466
BaeGI	GKGCMC	3 cut(s)	545, 786, 841
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	1447
BanII	GRGCYC	2 cut(s)	545, 786
BauI	CACGAG	2 cut(s)	1236, 1616
BbsI	GAAGAC	1 cut(s)	1640
Bbv12I	GWGCWC	2 cut(s)	841, 1461
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	827, 1100, 1268
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciT130I	CCWGG	2 cut(s)	459, 816
BclI	TGATCA	2 cut(s)	274, 651
BcoDI	GTCTC	1 cut(s)	1079
BfaI	CTAG	3 cut(s)	54, 726, 1659
BfmI	CTRYAG	1 cut(s)	1440
BfuAI	ACCTGC	2 cut(s)	1129, 1678
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	459, 816
Bme18I	GGWCC	3 cut(s)	818, 1376, 1466
BmeRI	GACNNNNNGTC	1 cut(s)	596
BmgT120I	GGNCC	7 cut(s)	541, 542, 782, 783, 818, 1376, 1466
BmiI	GGNNCC	7 cut(s)	543, 784, 785, 1140, 1422, 1449, 1467
BmrFI	CCNGG	2 cut(s)	459, 816
BmsI	GCATC	4 cut(s)	501, 537, 797, 819
BpiI	GAAGAC	1 cut(s)	1640
BpuEI	CTTGAG	1 cut(s)	1265
BsaAI	YACGTR	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	814
BsaWI	WCCGGW	2 cut(s)	640, 1468
BsaXI	ACNNNNNCTCC	6 cut(s)	123, 143, 153, 173, 468, 498
Bsc4I	CCNNNNNNNGG	5 cut(s)	309, 502, 793, 820, 1184
Bse118I	RCCGGY	1 cut(s)	820
Bse1I	ACTGG	1 cut(s)	1209
Bse3DI	GCAATG	1 cut(s)	1266
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	459, 816
BseDI	CCNNGG	1 cut(s)	814
BseGI	GGATG	4 cut(s)	413, 492, 810, 940
BseLI	CCNNNNNNNGG	5 cut(s)	309, 502, 793, 820, 1184
BseMI	GCAATG	1 cut(s)	1266
BseMII	CTCAG	1 cut(s)	966
BseNI	ACTGG	1 cut(s)	1209
BseRI	GAGGAG	2 cut(s)	4, 247
BseSI	GKGCMC	3 cut(s)	545, 786, 841
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	911
Bsh1236I	CGCG	2 cut(s)	330, 1191
Bsh1285I	CGRYCG	1 cut(s)	1473
BshFI	GGCC	6 cut(s)	462, 543, 628, 784, 797, 824
BshNI	GGYRCC	1 cut(s)	1447
BsiEI	CGRYCG	1 cut(s)	1473
BsiHKAI	GWGCWC	2 cut(s)	841, 1461
BsiSI	CCGG	3 cut(s)	641, 821, 1469
BslI	CCNNNNNNNGG	5 cut(s)	309, 502, 793, 820, 1184
BsmAI	GTCTC	1 cut(s)	1079
BsnI	GGCC	6 cut(s)	462, 543, 628, 784, 797, 824
Bsp120I	GGGCCC	2 cut(s)	541, 782
Bsp1286I	GDGCHC	4 cut(s)	545, 786, 841, 1461
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	5 cut(s)	274, 651, 775, 1225, 1655
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	6 cut(s)	117, 142, 204, 633, 746, 1495
BspANI	GGCC	6 cut(s)	462, 543, 628, 784, 797, 824
BspCNI	CTCAG	1 cut(s)	965
BspEI	TCCGGA	1 cut(s)	640
BspFNI	CGCG	2 cut(s)	330, 1191
BspLI	GGNNCC	7 cut(s)	543, 784, 785, 1140, 1422, 1449, 1467
BspMI	ACCTGC	2 cut(s)	1129, 1678
BspPI	GGATC	1 cut(s)	1663
BspQI	GCTCTTC	2 cut(s)	92, 1449
BspT107I	GGYRCC	1 cut(s)	1447
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	1266
BsrFI	RCCGGY	1 cut(s)	820
BsrI	ACTGG	1 cut(s)	1209
BssAI	RCCGGY	1 cut(s)	820
BssECI	CCNNGG	1 cut(s)	814
BssMI	GATC	5 cut(s)	274, 651, 775, 1225, 1655
BssSI	CACGAG	2 cut(s)	1236, 1616
Bst2BI	CACGAG	2 cut(s)	1236, 1616
Bst2UI	CCWGG	2 cut(s)	459, 816
Bst4CI	ACNGT	4 cut(s)	702, 1028, 1147, 1441
Bst6I	CTCTTC	5 cut(s)	67, 72, 92, 1345, 1449
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	6 cut(s)	101, 315, 748, 852, 905, 909
BstDEI	CTNAG	1 cut(s)	952
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstF5I	GGATG	4 cut(s)	413, 492, 810, 940
BstFNI	CGCG	2 cut(s)	330, 1191
BstHHI	GCGC	2 cut(s)	492, 1191
BstKTI	GATC	5 cut(s)	277, 654, 778, 1228, 1658
BstMAI	GTCTC	1 cut(s)	1079
BstMBI	GATC	5 cut(s)	274, 651, 775, 1225, 1655
BstMCI	CGRYCG	1 cut(s)	1473
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 722, 1228, 1456
BstNI	CCWGG	2 cut(s)	459, 816
BstNSI	RCATGY	3 cut(s)	596, 911, 1348
BstSCI	CCNGG	2 cut(s)	457, 814
BstSFI	CTRYAG	1 cut(s)	1440
BstSLI	GKGCMC	3 cut(s)	545, 786, 841
BstSNI	TACGTA	1 cut(s)	423
BstUI	CGCG	2 cut(s)	330, 1191
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	1640
BstX2I	RGATCY	1 cut(s)	1655
BstXI	CCANNNNNNTGG	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1655
BsuRI	GGCC	6 cut(s)	462, 543, 628, 784, 797, 824
BtsCI	GGATG	4 cut(s)	413, 492, 810, 940
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	5 cut(s)	707, 839, 1033, 1152, 1437
BtuMI	TCGCGA	1 cut(s)	330
BveI	ACCTGC	2 cut(s)	1129, 1678
Cac8I	GCNNGC	6 cut(s)	101, 315, 748, 852, 905, 909
CfoI	GCGC	2 cut(s)	492, 1191
Cfr10I	RCCGGY	1 cut(s)	820
Cfr13I	GGNCC	7 cut(s)	541, 542, 782, 783, 818, 1376, 1466
CseI	GACGC	1 cut(s)	909
Csp6I	GTAC	4 cut(s)	868, 948, 1532, 1608
CviAII	CATG	9 cut(s)	269, 278, 304, 593, 908, 1345, 1462, 1622, 1652
CviQI	GTAC	4 cut(s)	868, 948, 1532, 1608
DdeI	CTNAG	1 cut(s)	952
DpnI	GATC	5 cut(s)	276, 653, 777, 1227, 1657
DpnII	GATC	5 cut(s)	274, 651, 775, 1225, 1655
DriI	GACNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	2 cut(s)	460, 822
Eam1104I	CTCTTC	5 cut(s)	67, 72, 92, 1345, 1449
Eam1105I	GACNNNNNGTC	1 cut(s)	596
EarI	CTCTTC	5 cut(s)	67, 72, 92, 1345, 1449
EciI	GGCGGA	1 cut(s)	622
Eco105I	TACGTA	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	628
Eco24I	GRGCYC	2 cut(s)	545, 786
Eco47I	GGWCC	3 cut(s)	818, 1376, 1466
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoO109I	RGGNCCY	2 cut(s)	541, 783
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	457, 814
EcoT22I	ATGCAT	1 cut(s)	812
EcoT38I	GRGCYC	2 cut(s)	545, 786
FaeI	CATG	9 cut(s)	272, 281, 307, 596, 911, 1348, 1465, 1625, 1655
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 501, 533, 734, 766
FatI	CATG	9 cut(s)	268, 277, 303, 592, 907, 1344, 1461, 1621, 1651
FauI	CCCGC	2 cut(s)	739, 1488
FbaI	TGATCA	2 cut(s)	274, 651
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	4 cut(s)	400, 479, 797, 947
FriOI	GRGCYC	2 cut(s)	545, 786
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	3 cut(s)	54, 726, 1659
GlaI	GCGC	2 cut(s)	491, 1190
GluI	GCNGC	1 cut(s)	83
GsaI	CCCAGC	1 cut(s)	915
HaeIII	GGCC	6 cut(s)	462, 543, 628, 784, 797, 824
HapII	CCGG	3 cut(s)	641, 821, 1469
HgaI	GACGC	1 cut(s)	909
HhaI	GCGC	2 cut(s)	492, 1191
Hin1II	CATG	9 cut(s)	272, 281, 307, 596, 911, 1348, 1465, 1625, 1655
Hin6I	GCGC	2 cut(s)	490, 1189
HinP1I	GCGC	2 cut(s)	490, 1189
HinfI	GANTC	6 cut(s)	299, 362, 431, 514, 530, 959
HpaII	CCGG	3 cut(s)	641, 821, 1469
HphI	GGTGA	5 cut(s)	1052, 1094, 1167, 1289, 1414
Hpy166II	GTNNAC	4 cut(s)	839, 1024, 1307, 1532
Hpy188I	TCNGA	9 cut(s)	196, 469, 590, 772, 924, 955, 1077, 1376, 1636
Hpy188III	TCNNGA	7 cut(s)	147, 214, 329, 581, 641, 1238, 1580
Hpy8I	GTNNAC	4 cut(s)	839, 1024, 1307, 1532
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4III	ACNGT	4 cut(s)	702, 1028, 1147, 1441
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	9 cut(s)	810, 839, 844, 907, 1321, 1516, 1590, 1621, 1673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 722, 1228, 1456
HpyF3I	CTNAG	1 cut(s)	952
HpySE526I	ACGT	1 cut(s)	422
Hsp92II	CATG	9 cut(s)	272, 281, 307, 596, 911, 1348, 1465, 1625, 1655
HspAI	GCGC	2 cut(s)	490, 1189
Kpn2I	TCCGGA	1 cut(s)	640
Ksp22I	TGATCA	2 cut(s)	274, 651
Kzo9I	GATC	5 cut(s)	274, 651, 775, 1225, 1655
LguI	GCTCTTC	2 cut(s)	92, 1449
LmnI	GCTCC	2 cut(s)	149, 191
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	4 cut(s)	501, 537, 797, 819
MaeI	CTAG	3 cut(s)	54, 726, 1659
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	239, 1204, 1250
MalI	GATC	5 cut(s)	276, 653, 777, 1227, 1657
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	5 cut(s)	274, 651, 775, 1225, 1655
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	1655
MhlI	GDGCHC	4 cut(s)	545, 786, 841, 1461
MlsI	TGGCCA	1 cut(s)	462
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	356, 425
MmeI	TCCRAC	2 cut(s)	194, 1354
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	812
MroI	TCCGGA	1 cut(s)	640
MroXI	GAANNNNTTC	2 cut(s)	61, 513
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	6 cut(s)	441, 735, 1065, 1392, 1553, 1602
MslI	CAYNNNNRTG	1 cut(s)	1130
Msp20I	TGGCCA	1 cut(s)	462
MspI	CCGG	3 cut(s)	641, 821, 1469
MspR9I	CCNGG	2 cut(s)	459, 816
MunI	CAATTG	1 cut(s)	1089
MvaI	CCWGG	2 cut(s)	459, 816
MvnI	CGCG	2 cut(s)	330, 1191
MwoI	GCNNNNNNNGC	4 cut(s)	263, 722, 1228, 1456
NdeII	GATC	5 cut(s)	274, 651, 775, 1225, 1655
NlaIII	CATG	9 cut(s)	272, 281, 307, 596, 911, 1348, 1465, 1625, 1655
NlaIV	GGNNCC	7 cut(s)	543, 784, 785, 1140, 1422, 1449, 1467
NmuCI	GTSAC	1 cut(s)	239
NruI	TCGCGA	1 cut(s)	330
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	3 cut(s)	596, 911, 1348
PaeI	GCATGC	1 cut(s)	911
PceI	AGGCCT	1 cut(s)	628
PciSI	GCTCTTC	2 cut(s)	92, 1449
PcsI	WCGNNNNNNNCGW	1 cut(s)	1234
PdmI	GAANNNNTTC	2 cut(s)	61, 513
PfeI	GAWTC	4 cut(s)	299, 514, 530, 959
PflMI	CCANNNNNTGG	1 cut(s)	1184
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	2 cut(s)	356, 425
PpsI	GAGTC	2 cut(s)	356, 425
Ppu21I	YACGTR	1 cut(s)	423
PshBI	ATTAAT	2 cut(s)	441, 1065
Psp6I	CCWGG	2 cut(s)	457, 814
PspFI	CCCAGC	1 cut(s)	911
PspGI	CCWGG	2 cut(s)	457, 814
PspN4I	GGNNCC	7 cut(s)	543, 784, 785, 1140, 1422, 1449, 1467
PspOMI	GGGCCC	2 cut(s)	541, 782
PspPI	GGNCC	7 cut(s)	541, 542, 782, 783, 818, 1376, 1466
PsrI	GAACNNNNNNTAC	2 cut(s)	989, 1021
PsuI	RGATCY	1 cut(s)	1655
RruI	TCGCGA	1 cut(s)	330
RsaI	GTAC	4 cut(s)	869, 949, 1533, 1609
RsaNI	GTAC	4 cut(s)	868, 948, 1532, 1608
RseI	CAYNNNNRTG	1 cut(s)	1130
SapI	GCTCTTC	2 cut(s)	92, 1449
SaqAI	TTAA	6 cut(s)	441, 735, 1065, 1392, 1553, 1602
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	5 cut(s)	274, 651, 775, 1225, 1655
Sau96I	GGNCC	7 cut(s)	541, 542, 782, 783, 818, 1376, 1466
SchI	GAGTC	2 cut(s)	356, 425
ScrFI	CCNGG	2 cut(s)	459, 816
SduI	GDGCHC	4 cut(s)	545, 786, 841, 1461
SfaNI	GCATC	4 cut(s)	501, 537, 797, 819
SfcI	CTRYAG	1 cut(s)	1440
SinI	GGWCC	3 cut(s)	818, 1376, 1466
SmiMI	CAYNNNNRTG	1 cut(s)	1130
SmlI	CTYRAG	1 cut(s)	1244
SmoI	CTYRAG	1 cut(s)	1244
SnaBI	TACGTA	1 cut(s)	423
SphI	GCATGC	1 cut(s)	911
SseBI	AGGCCT	1 cut(s)	628
SsiI	CCGC	6 cut(s)	117, 142, 204, 633, 746, 1495
SspMI	CTAG	3 cut(s)	54, 726, 1659
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	457, 814
TaaI	ACNGT	4 cut(s)	702, 1028, 1147, 1441
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	5 cut(s)	213, 434, 486, 864, 886
TatI	WGTACW	1 cut(s)	1531
TfiI	GAWTC	4 cut(s)	299, 514, 530, 959
Tru1I	TTAA	6 cut(s)	441, 735, 1065, 1392, 1553, 1602
Tru9I	TTAA	6 cut(s)	441, 735, 1065, 1392, 1553, 1602
TscAI	CASTG	5 cut(s)	707, 846, 1033, 1152, 1444
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	711, 1277, 1285, 1640
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	5 cut(s)	707, 846, 1033, 1152, 1444
Van91I	CCANNNNNTGG	1 cut(s)	1184
VneI	GTGCAC	1 cut(s)	837
VpaK11BI	GGWCC	3 cut(s)	818, 1376, 1466
VspI	ATTAAT	2 cut(s)	441, 1065
XagI	CCTNNNNNAGG	1 cut(s)	791
XapI	RAATTY	3 cut(s)	584, 1364, 1574
XceI	RCATGY	3 cut(s)	596, 911, 1348
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 470
XmiI	GTMKAC	1 cut(s)	1023
XmnI	GAANNNNTTC	2 cut(s)	61, 513
XspI	CTAG	3 cut(s)	54, 726, 1659
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.