MD07G1169000.v1.1

FGGY carbohydrate kinase domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014822
Physical Location & Seq
Reverse (-)
24355127 .. 24358175
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1169000.v1.1.491

Sequence Viewer

Length: 339 bp
ATGGCACGCGTCATATTGTTGAGCACTGCAATGCCAATGGTCACAAAATTGACACGATACTATCATGTGGAGGCCTTGCGCGCACTATTAATTCAAGAACATGCAGATATAATAGGTTGCCGCCCAATAATTCGTCCACGAGAAAGTGAACCTGTGCTCTTGGGTGCTGCCATTCTTGGTGCTGTTGCGGGAAGGAAATATTCTAGTCTGCATGAGGCCATGAAGGCTCTGAATGCAGTGGGGCAGGTACTAATGGTGAATTTTTTGGATTTCAGTTTTTCAAAACTAATATTTTTTTACCTTTCTGAGGGAGAATATTTAGGTCTGAAGCGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FGGY_C FGGY_N

Protein Analysis

113

Amino Acids

12.54

Weight (kDa)

9.2

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_C PF02782 28 - 63 2.7e-06 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccII CGCG 2 cut(s) 9, 81
AciI CCGC 2 cut(s) 121, 188
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 2 cut(s) 95, 282
Alw21I GWGCWC 2 cut(s) 26, 159
AoxI GGCC 2 cut(s) 72, 216
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 259
AseI ATTAAT 1 cut(s) 89
AspLEI GCGC 2 cut(s) 81, 83
AsuHPI GGTGA 1 cut(s) 268
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 26, 159
BbvI GCAGC 1 cut(s) 154
BfaI CTAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 235
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 2 cut(s) 121, 168
BlsI GCNGC 2 cut(s) 122, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 297
BsePI GCGCGC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 2 cut(s) 9, 81
BshFI GGCC 2 cut(s) 74, 218
BsiHKAI GWGCWC 2 cut(s) 26, 159
BslI CCNNNNNNNGG 1 cut(s) 307
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 74, 218
Bsp1286I GDGCHC 2 cut(s) 26, 159
BspACI CCGC 2 cut(s) 121, 188
BspANI GGCC 2 cut(s) 74, 218
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 2 cut(s) 9, 81
BspMI ACCTGC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 36
BssHII GCGCGC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 7, 81
BstDEI CTNAG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 305
BstFNI CGCG 2 cut(s) 9, 81
BstHHI GCGC 2 cut(s) 81, 83
BstMWI GCNNNNNNNGC 3 cut(s) 80, 224, 233
BstNSI RCATGY 1 cut(s) 104
BstUI CGCG 2 cut(s) 9, 81
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 74, 218
BtsI GCAGTG 2 cut(s) 24, 243
BtsIMutI CAGTG 2 cut(s) 24, 243
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 7, 81
CfoI GCGC 2 cut(s) 81, 83
Csp6I GTAC 1 cut(s) 248
CviAII CATG 4 cut(s) 65, 101, 212, 220
CviJI RGCY 3 cut(s) 74, 218, 227
CviKI_1 RGCY 3 cut(s) 74, 218, 227
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 305
FaeI CATG 4 cut(s) 68, 104, 215, 223
FaiI YATR 6 cut(s) 14, 66, 102, 110, 213, 221
FatI CATG 4 cut(s) 64, 100, 211, 219
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 121, 168
Fsp4HI GCNGC 2 cut(s) 121, 168
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 80, 82
GluI GCNGC 2 cut(s) 121, 168
HaeIII GGCC 2 cut(s) 74, 218
HhaI GCGC 2 cut(s) 81, 83
Hin1II CATG 4 cut(s) 68, 104, 215, 223
Hin6I GCGC 2 cut(s) 79, 81
HinP1I GCGC 2 cut(s) 79, 81
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 137, 149
Hpy188I TCNGA 3 cut(s) 231, 307, 327
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 137, 149
HpyAV CCTTC 2 cut(s) 186, 217
HpyCH4V TGCA 4 cut(s) 29, 104, 211, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 224, 233
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 4 cut(s) 68, 104, 215, 223
HspAI GCGC 2 cut(s) 79, 81
LpnPI CCDG 2 cut(s) 165, 230
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 26, 159
MluCI AATT 4 cut(s) 47, 90, 129, 259
MluI ACGCGT 1 cut(s) 7
MnlI CCTC 3 cut(s) 64, 208, 301
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 238
MvnI CGCG 2 cut(s) 9, 81
MwoI GCNNNNNNNGC 3 cut(s) 80, 224, 233
NlaIII CATG 4 cut(s) 68, 104, 215, 223
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 104
PauI GCGCGC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 74
PctI GAATGC 1 cut(s) 238
PkrI GCNGC 2 cut(s) 122, 169
PshBI ATTAAT 1 cut(s) 89
PteI GCGCGC 1 cut(s) 79
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 2 cut(s) 121, 168
SduI GDGCHC 2 cut(s) 26, 159
SetI ASST 5 cut(s) 118, 154, 249, 303, 325
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 4 cut(s) 47, 90, 129, 259
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 2 cut(s) 121, 188
SspI AATATT 3 cut(s) 200, 291, 317
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 74
TasI AATT 4 cut(s) 47, 90, 129, 259
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 2 cut(s) 31, 243
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 2 cut(s) 31, 243
VspI ATTAAT 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 104
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.